RNA–Protein interactions for RNA: ENST00000414963.2

SF3B1-204, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 1 (best) BASIC

Gene SF3B1, Length 651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-204ENST00000414963 DICER1Q9UPY3 1922 aaKnown RBP17.07■□□□□ 0.32
SF3B1-204ENST00000414963 ZNF541Q9H0D2 1346 aa17.06■□□□□ 0.32
SF3B1-204ENST00000414963 BTDP43251 543 aa17.06■□□□□ 0.32
SF3B1-204ENST00000414963 SCNN1DP51172 638 aa17.06■□□□□ 0.32
SF3B1-204ENST00000414963 ZNF280AP59817 542 aaPredicted RBP17.06■□□□□ 0.32
SF3B1-204ENST00000414963 NECTIN1Q15223 517 aa17.06■□□□□ 0.32
SF3B1-204ENST00000414963 VPS53Q5VIR6 699 aa17.06■□□□□ 0.32
SF3B1-204ENST00000414963 APOBEC3HQ6NTF7 200 aaKnown RBP17.06■□□□□ 0.32
SF3B1-204ENST00000414963 GIMAP6Q6P9H5 292 aa17.06■□□□□ 0.32
SF3B1-204ENST00000414963 GPC2Q8N158 579 aa17.06■□□□□ 0.32
SF3B1-204ENST00000414963 OGFOD1Q8N543 542 aa17.06■□□□□ 0.32
SF3B1-204ENST00000414963 MTMR14Q8NCE2 650 aa17.06■□□□□ 0.32
SF3B1-204ENST00000414963 KCNB2Q92953 911 aa17.06■□□□□ 0.32
SF3B1-204ENST00000414963 C22orf23Q9BZE7 217 aa17.06■□□□□ 0.32
SF3B1-204ENST00000414963 AATFQ9NY61 560 aaKnown RBP eCLIP17.06■□□□□ 0.32
SF3B1-204ENST00000414963 HDAC9Q9UKV0 1011 aa17.06■□□□□ 0.32
SF3B1-204ENST00000414963 ZBTB12Q9Y330 459 aaPredicted RBP17.06■□□□□ 0.32
SF3B1-204ENST00000414963 ZMYM6O95789 1325 aa17.05■□□□□ 0.32
SF3B1-204ENST00000414963 GSG1L2A8MUP6 293 aa17.05■□□□□ 0.32
SF3B1-204ENST00000414963 HSPA4P34932 840 aa17.05■□□□□ 0.32
SF3B1-204ENST00000414963 RHBDL3P58872 404 aa17.05■□□□□ 0.32
SF3B1-204ENST00000414963 IL17RAQ96F46 866 aa17.05■□□□□ 0.32
SF3B1-204ENST00000414963 CRNKL1Q9BZJ0 848 aaKnown RBP17.05■□□□□ 0.32
SF3B1-204ENST00000414963 RBM8AQ9Y5S9 174 aaKnown RBP17.05■□□□□ 0.32
SF3B1-204ENST00000414963 ATP8A2Q9NTI2 1148 aa17.04■□□□□ 0.32
SF3B1-204ENST00000414963 CTNNA3Q9UI47 895 aa17.04■□□□□ 0.32
SF3B1-204ENST00000414963 SLC4A4Q9Y6R1 1079 aa17.04■□□□□ 0.32
SF3B1-204ENST00000414963 PRKAB2O43741 272 aa17.03■□□□□ 0.32
SF3B1-204ENST00000414963 FGAP02671 866 aa17.03■□□□□ 0.32
SF3B1-204ENST00000414963 MCCP23508 829 aa17.03■□□□□ 0.32
SF3B1-204ENST00000414963 GMPSP49915 693 aaPredicted RBP17.03■□□□□ 0.32
SF3B1-204ENST00000414963 ANAPC15P60006 121 aa17.03■□□□□ 0.32
SF3B1-204ENST00000414963 CFAP100Q494V2 611 aa17.03■□□□□ 0.32
SF3B1-204ENST00000414963 IFNL3Q8IZI9 196 aa17.03■□□□□ 0.32
SF3B1-204ENST00000414963 SH3RF3Q8TEJ3 882 aaPredicted RBP17.03■□□□□ 0.32
SF3B1-204ENST00000414963 ZBED3Q96IU2 234 aaPredicted RBP17.03■□□□□ 0.32
SF3B1-204ENST00000414963 NACAP1Q9BZK3 213 aa17.03■□□□□ 0.32
SF3B1-204ENST00000414963 MKRN1Q9UHC7 482 aaKnown RBP17.03■□□□□ 0.32
SF3B1-204ENST00000414963 GJA3Q9Y6H8 435 aa17.03■□□□□ 0.32
SF3B1-204ENST00000414963 MYH2Q9UKX2 1941 aa17.02■□□□□ 0.32
SF3B1-204ENST00000414963 NPM3O75607 178 aaKnown RBP17.02■□□□□ 0.32
SF3B1-204ENST00000414963 TSGA10IPQ3SY00 556 aa17.02■□□□□ 0.32
SF3B1-204ENST00000414963 CDC42EP5Q6NZY7 148 aa17.02■□□□□ 0.32
SF3B1-204ENST00000414963 EPB41L4AQ9HCS5 686 aaPredicted RBP17.02■□□□□ 0.32
SF3B1-204ENST00000414963 TSHZ2Q9NRE2 1034 aa17.02■□□□□ 0.32
SF3B1-204ENST00000414963 SPDYE2BA6NHP3 402 aa17.01■□□□□ 0.31
SF3B1-204ENST00000414963 APPP05067 770 aa17.01■□□□□ 0.31
SF3B1-204ENST00000414963 SPDYE6P0CI01 402 aa17.01■□□□□ 0.31
SF3B1-204ENST00000414963 DLGAP5Q15398 846 aa17.01■□□□□ 0.31
SF3B1-204ENST00000414963 CREB3L3Q68CJ9 461 aa17.01■□□□□ 0.31
SF3B1-204ENST00000414963 PRMT6Q96LA8 375 aaPredicted RBP17.01■□□□□ 0.31
SF3B1-204ENST00000414963 DCP1AQ9NPI6 582 aaPredicted RBP17.01■□□□□ 0.31
SF3B1-204ENST00000414963 USP40Q9NVE5 1235 aa17.01■□□□□ 0.31
SF3B1-204ENST00000414963 CNOT7Q9UIV1 285 aaKnown RBP17.01■□□□□ 0.31
SF3B1-204ENST00000414963 SLC27A2O14975 620 aa17■□□□□ 0.31
SF3B1-204ENST00000414963 RBM5P52756 815 aaKnown RBP eCLIP17■□□□□ 0.31
SF3B1-204ENST00000414963 RNF20Q5VTR2 975 aa17■□□□□ 0.31
SF3B1-204ENST00000414963 TEX11Q8IYF3 940 aa17■□□□□ 0.31
SF3B1-204ENST00000414963 SDR42E1Q8WUS8 393 aa17■□□□□ 0.31
SF3B1-204ENST00000414963 MYOZ2Q9NPC6 264 aa17■□□□□ 0.31
SF3B1-204ENST00000414963 GPRC5DQ9NZD1 345 aa17■□□□□ 0.31
SF3B1-204ENST00000414963 DCAF8L1A6NGE4 600 aa16.99■□□□□ 0.31
SF3B1-204ENST00000414963 WDHD1O75717 1129 aaPredicted RBP16.99■□□□□ 0.31
SF3B1-204ENST00000414963 SBK1Q52WX2 424 aa16.99■□□□□ 0.31
SF3B1-204ENST00000414963 DPY19L2Q6NUT2 758 aa16.99■□□□□ 0.31
SF3B1-204ENST00000414963 MICALL2Q8IY33 904 aa16.99■□□□□ 0.31
SF3B1-204ENST00000414963 DDRGK1Q96HY6 314 aa16.99■□□□□ 0.31
SF3B1-204ENST00000414963 KIF2CQ99661 725 aa16.99■□□□□ 0.31
SF3B1-204ENST00000414963 IDI2Q9BXS1 227 aa16.99■□□□□ 0.31
SF3B1-204ENST00000414963 NAPBQ9H115 298 aa16.99■□□□□ 0.31
SF3B1-204ENST00000414963 PCDHAC2Q9Y5I4 1007 aa16.99■□□□□ 0.31
SF3B1-204ENST00000414963 H7C1D1 291 aa16.98■□□□□ 0.31
SF3B1-204ENST00000414963 DDNO94850 711 aaPredicted RBP16.98■□□□□ 0.31
SF3B1-204ENST00000414963 CYP21A2P08686 494 aa16.98■□□□□ 0.31
SF3B1-204ENST00000414963 ZKSCAN1P17029 563 aaPredicted RBP16.98■□□□□ 0.31
SF3B1-204ENST00000414963 USP5P45974 858 aa16.98■□□□□ 0.31
SF3B1-204ENST00000414963 IMMTQ16891 758 aaKnown RBP16.98■□□□□ 0.31
SF3B1-204ENST00000414963 FKBP1CQ5VVH2 108 aa16.98■□□□□ 0.31
SF3B1-204ENST00000414963 RASEFQ8IZ41 740 aa16.98■□□□□ 0.31
SF3B1-204ENST00000414963 TGFBRAP1Q8WUH2 860 aa16.98■□□□□ 0.31
SF3B1-204ENST00000414963 L3MBTL3Q96JM7 780 aaPredicted RBP16.98■□□□□ 0.31
SF3B1-204ENST00000414963 ANAPC4Q9UJX5 808 aa16.98■□□□□ 0.31
SF3B1-204ENST00000414963 PALD1Q9ULE6 856 aa16.98■□□□□ 0.31
SF3B1-204ENST00000414963 SNX14Q9Y5W7 946 aa16.98■□□□□ 0.31
SF3B1-204ENST00000414963 TIAM2Q8IVF5 1701 aa16.98■□□□□ 0.31
SF3B1-204ENST00000414963 SHTN1A0MZ66 631 aa16.97■□□□□ 0.31
SF3B1-204ENST00000414963 GLTPD2A6NH11 291 aa16.97■□□□□ 0.31
SF3B1-204ENST00000414963 ZNF213O14771 459 aa16.97■□□□□ 0.31
SF3B1-204ENST00000414963 TDO2P48775 406 aa16.97■□□□□ 0.31
SF3B1-204ENST00000414963 SPDYE2Q495Y8 402 aa16.97■□□□□ 0.31
SF3B1-204ENST00000414963 CTR9Q6PD62 1173 aa16.97■□□□□ 0.31
SF3B1-204ENST00000414963 IL27Q8NEV9 243 aa16.97■□□□□ 0.31
SF3B1-204ENST00000414963 FLT1P17948 1338 aa16.96■□□□□ 0.31
SF3B1-204ENST00000414963 WNT10BO00744 389 aa16.96■□□□□ 0.31
SF3B1-204ENST00000414963 KRT32Q14532 448 aa16.96■□□□□ 0.31
SF3B1-204ENST00000414963 TM6SF1Q9BZW5 370 aa16.96■□□□□ 0.31
SF3B1-204ENST00000414963 TDRD3Q9H7E2 651 aaKnown RBP16.96■□□□□ 0.31
SF3B1-204ENST00000414963 ARPP21Q9UBL0 812 aaPredicted RBP16.96■□□□□ 0.31
SF3B1-204ENST00000414963 ZNF70Q9UC06 446 aaPredicted RBP16.96■□□□□ 0.31
SF3B1-204ENST00000414963 ADAMTSL1Q8N6G6 1762 aa16.95■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms