RNA–Protein interactions for RNA: ENST00000414861.6

RIF1-202, Transcript of replication timing regulatory factor 1, humanhuman

TSL 1 (best)

Gene RIF1, Length 2,534 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RIF1-202ENST00000414861 LMNB1P20700 586 aa11.57□□□□□ -0.56
RIF1-202ENST00000414861 SH3RF3Q8TEJ3 882 aaPredicted RBP11.57□□□□□ -0.56
RIF1-202ENST00000414861 FAM163AQ96GL9 167 aaPredicted RBP11.57□□□□□ -0.56
RIF1-202ENST00000414861 SNX14Q9Y5W7 946 aa11.57□□□□□ -0.56
RIF1-202ENST00000414861 DDX60LQ5H9U9 1706 aaKnown RBP11.57□□□□□ -0.56
RIF1-202ENST00000414861 GPR75-ASB3A0A0A6YYF3 556 aa11.57□□□□□ -0.56
RIF1-202ENST00000414861 FZD9O00144 591 aa11.57□□□□□ -0.56
RIF1-202ENST00000414861 APPP05067 770 aa11.57□□□□□ -0.56
RIF1-202ENST00000414861 CYP21A2P08686 494 aa11.57□□□□□ -0.56
RIF1-202ENST00000414861 MCCP23508 829 aa11.57□□□□□ -0.56
RIF1-202ENST00000414861 CRKP46108 304 aa11.57□□□□□ -0.56
RIF1-202ENST00000414861 COL9A3Q14050 684 aaPredicted RBP11.57□□□□□ -0.56
RIF1-202ENST00000414861 CIAPIN1Q6FI81 312 aa11.57□□□□□ -0.56
RIF1-202ENST00000414861 KCNB2Q92953 911 aa11.57□□□□□ -0.56
RIF1-202ENST00000414861 LAMB1P07942 1786 aa11.57□□□□□ -0.56
RIF1-202ENST00000414861 PATL2C9JE40 543 aaKnown RBP11.56□□□□□ -0.56
RIF1-202ENST00000414861 LDHCP07864 332 aa11.56□□□□□ -0.56
RIF1-202ENST00000414861 RHBDL3P58872 404 aa11.56□□□□□ -0.56
RIF1-202ENST00000414861 TEKT1Q969V4 418 aa11.56□□□□□ -0.56
RIF1-202ENST00000414861 MYO3BQ8WXR4 1341 aa11.56□□□□□ -0.56
RIF1-202ENST00000414861 SHTN1A0MZ66 631 aa11.56□□□□□ -0.56
RIF1-202ENST00000414861 GNAT2P19087 354 aa11.56□□□□□ -0.56
RIF1-202ENST00000414861 PPP4CP60510 307 aa11.56□□□□□ -0.56
RIF1-202ENST00000414861 HAND2P61296 217 aa11.56□□□□□ -0.56
RIF1-202ENST00000414861 ADCK5Q3MIX3 580 aa11.56□□□□□ -0.56
RIF1-202ENST00000414861 IFNL3Q8IZI9 196 aa11.56□□□□□ -0.56
RIF1-202ENST00000414861 IL17RAQ96F46 866 aa11.56□□□□□ -0.56
RIF1-202ENST00000414861 SMIM22K7EJ46 135 aa11.55□□□□□ -0.56
RIF1-202ENST00000414861 ANAPC15P60006 121 aa11.55□□□□□ -0.56
RIF1-202ENST00000414861 GPR162Q16538 588 aa11.55□□□□□ -0.56
RIF1-202ENST00000414861 APOBEC3HQ6NTF7 200 aaKnown RBP11.55□□□□□ -0.56
RIF1-202ENST00000414861 HHIPL2Q6UWX4 724 aa11.55□□□□□ -0.56
RIF1-202ENST00000414861 SLF2Q8IX21 1173 aa11.55□□□□□ -0.56
RIF1-202ENST00000414861 NBPF3Q9H094 633 aa11.55□□□□□ -0.56
RIF1-202ENST00000414861 MYH1P12882 1939 aa11.55□□□□□ -0.56
RIF1-202ENST00000414861 ZMYM6O95789 1325 aa11.55□□□□□ -0.56
RIF1-202ENST00000414861 BAG3O95817 575 aa11.55□□□□□ -0.56
RIF1-202ENST00000414861 ALX1Q15699 326 aa11.55□□□□□ -0.56
RIF1-202ENST00000414861 STOX1Q6ZVD7 989 aa11.55□□□□□ -0.56
RIF1-202ENST00000414861 CRNKL1Q9BZJ0 848 aaKnown RBP11.55□□□□□ -0.56
RIF1-202ENST00000414861 NAPBQ9H115 298 aa11.55□□□□□ -0.56
RIF1-202ENST00000414861 TDO2P48775 406 aa11.54□□□□□ -0.56
RIF1-202ENST00000414861 EVX2Q03828 476 aa11.54□□□□□ -0.56
RIF1-202ENST00000414861 ZDHHC15Q96MV8 337 aa11.54□□□□□ -0.56
RIF1-202ENST00000414861 NOL10Q9BSC4 688 aaKnown RBP11.54□□□□□ -0.56
RIF1-202ENST00000414861 UPF3BQ9BZI7 483 aaKnown RBP11.54□□□□□ -0.56
RIF1-202ENST00000414861 DCP1AQ9NPI6 582 aaPredicted RBP11.54□□□□□ -0.56
RIF1-202ENST00000414861 RNF181Q9P0P0 153 aa11.54□□□□□ -0.56
RIF1-202ENST00000414861 SERPINA10Q9UK55 444 aa11.54□□□□□ -0.56
RIF1-202ENST00000414861 RPAP1Q9BWH6 1393 aaPredicted RBP11.54□□□□□ -0.56
RIF1-202ENST00000414861 CYP2D7A0A087X1C5 515 aa11.54□□□□□ -0.56
RIF1-202ENST00000414861 EIF6P56537 245 aaKnown RBP11.54□□□□□ -0.56
RIF1-202ENST00000414861 HDLBPQ00341 1268 aaKnown RBP11.54□□□□□ -0.56
RIF1-202ENST00000414861 TNIP1Q15025 636 aa11.54□□□□□ -0.56
RIF1-202ENST00000414861 TBC1D10CQ8IV04 446 aa11.54□□□□□ -0.56
RIF1-202ENST00000414861 AGBL3Q8NEM8 1001 aa11.54□□□□□ -0.56
RIF1-202ENST00000414861 TGFBRAP1Q8WUH2 860 aa11.54□□□□□ -0.56
RIF1-202ENST00000414861 MKRN1Q9UHC7 482 aaKnown RBP11.54□□□□□ -0.56
RIF1-202ENST00000414861 CD2BP2O95400 341 aaKnown RBP11.53□□□□□ -0.56
RIF1-202ENST00000414861 CPA1P15085 419 aa11.53□□□□□ -0.56
RIF1-202ENST00000414861 ZKSCAN1P17029 563 aaPredicted RBP11.53□□□□□ -0.56
RIF1-202ENST00000414861 ANP32AP39687 249 aaKnown RBP11.53□□□□□ -0.56
RIF1-202ENST00000414861 RBM5P52756 815 aaKnown RBP eCLIP11.53□□□□□ -0.562e-8■■■□□ 16.5
RIF1-202ENST00000414861 CFAP100Q494V2 611 aa11.53□□□□□ -0.56
RIF1-202ENST00000414861 RNF20Q5VTR2 975 aa11.53□□□□□ -0.56
RIF1-202ENST00000414861 CDC42EP5Q6NZY7 148 aa11.53□□□□□ -0.56
RIF1-202ENST00000414861 TEX11Q8IYF3 940 aa11.53□□□□□ -0.56
RIF1-202ENST00000414861 CTNNA3Q9UI47 895 aa11.53□□□□□ -0.56
RIF1-202ENST00000414861 GJA3Q9Y6H8 435 aa11.53□□□□□ -0.56
RIF1-202ENST00000414861 WDHD1O75717 1129 aaPredicted RBP11.53□□□□□ -0.56
RIF1-202ENST00000414861 USP17L8P0C7I0 530 aa11.53□□□□□ -0.56
RIF1-202ENST00000414861 GMPSP49915 693 aaPredicted RBP11.53□□□□□ -0.56
RIF1-202ENST00000414861 IMMTQ16891 758 aaKnown RBP11.53□□□□□ -0.56
RIF1-202ENST00000414861 SLC4A8Q2Y0W8 1093 aa11.53□□□□□ -0.56
RIF1-202ENST00000414861 TSGA10IPQ3SY00 556 aa11.53□□□□□ -0.56
RIF1-202ENST00000414861 C9orf131Q5VYM1 1079 aa11.53□□□□□ -0.56
RIF1-202ENST00000414861 MAPKAPK5Q8IW41 473 aa11.53□□□□□ -0.56
RIF1-202ENST00000414861 JAKMIP1Q96N16 626 aaKnown RBP11.53□□□□□ -0.56
RIF1-202ENST00000414861 MRIQ9BWK5 157 aa11.53□□□□□ -0.56
RIF1-202ENST00000414861 NACAP1Q9BZK3 213 aa11.53□□□□□ -0.56
RIF1-202ENST00000414861 DDX4Q9NQI0 724 aaKnown RBP11.53□□□□□ -0.56
RIF1-202ENST00000414861 TACC3Q9Y6A5 838 aa11.53□□□□□ -0.56
RIF1-202ENST00000414861 FLT1P17948 1338 aa11.53□□□□□ -0.56
RIF1-202ENST00000414861 CYP2D6P10635 497 aa11.52□□□□□ -0.56
RIF1-202ENST00000414861 PLCG2P16885 1265 aa11.52□□□□□ -0.56
RIF1-202ENST00000414861 USP5P45974 858 aa11.52□□□□□ -0.56
RIF1-202ENST00000414861 CACNB3P54284 484 aa11.52□□□□□ -0.56
RIF1-202ENST00000414861 RABEP1Q15276 862 aa11.52□□□□□ -0.56
RIF1-202ENST00000414861 PRMT6Q96LA8 375 aaPredicted RBP11.52□□□□□ -0.56
RIF1-202ENST00000414861 USP40Q9NVE5 1235 aa11.52□□□□□ -0.56
RIF1-202ENST00000414861 EGFRP00533 1210 aa11.52□□□□□ -0.57
RIF1-202ENST00000414861 CASTP20810 708 aaKnown RBP11.52□□□□□ -0.57
RIF1-202ENST00000414861 CTDSPL2Q05D32 466 aa11.52□□□□□ -0.57
RIF1-202ENST00000414861 NFIAQ12857 509 aa11.52□□□□□ -0.57
RIF1-202ENST00000414861 GIMAP6Q6P9H5 292 aa11.52□□□□□ -0.57
RIF1-202ENST00000414861 CTR9Q6PD62 1173 aa11.52□□□□□ -0.57
RIF1-202ENST00000414861 CERS3Q8IU89 383 aa11.52□□□□□ -0.57
RIF1-202ENST00000414861 NKX2-3Q8TAU0 364 aa11.52□□□□□ -0.57
RIF1-202ENST00000414861 ATP8A2Q9NTI2 1148 aa11.52□□□□□ -0.57
RIF1-202ENST00000414861 SPDYE2BA6NHP3 402 aa11.51□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms