RNA–Protein interactions for RNA: ENST00000409025.5

USP39-202, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 5 BASIC

Gene USP39, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-202ENST00000409025 CNPY2Q9Y2B0 182 aa22.29■■□□□ 1.16
USP39-202ENST00000409025 MAST2Q6P0Q8 1798 aa22.29■■□□□ 1.16
USP39-202ENST00000409025 IGSF3O75054 1194 aa22.29■■□□□ 1.16
USP39-202ENST00000409025 CTDNEP1O95476 244 aa22.29■■□□□ 1.16
USP39-202ENST00000409025 ILDR1Q86SU0 546 aaPredicted RBP22.29■■□□□ 1.16
USP39-202ENST00000409025 TDRD7Q8NHU6 1098 aaKnown RBP22.29■■□□□ 1.16
USP39-202ENST00000409025 WDR66Q8TBY9 1149 aa22.29■■□□□ 1.16
USP39-202ENST00000409025 ZNF384Q8TF68 577 aa22.29■■□□□ 1.16
USP39-202ENST00000409025 STAG1Q8WVM7 1258 aa22.29■■□□□ 1.16
USP39-202ENST00000409025 GDPD2Q9HCC8 539 aa22.29■■□□□ 1.16
USP39-202ENST00000409025 GGA1Q9UJY5 639 aa22.29■■□□□ 1.16
USP39-202ENST00000409025 CCDC88AQ3V6T2 1871 aa22.29■■□□□ 1.16
USP39-202ENST00000409025 SALL1Q9NSC2 1324 aa22.28■■□□□ 1.16
USP39-202ENST00000409025 FSD2A1L4K1 749 aa22.28■■□□□ 1.16
USP39-202ENST00000409025 DHX16O60231 1041 aaKnown RBP22.28■■□□□ 1.16
USP39-202ENST00000409025 UFL1O94874 794 aa22.28■■□□□ 1.16
USP39-202ENST00000409025 CSPP1Q1MSJ5 1256 aa22.28■■□□□ 1.16
USP39-202ENST00000409025 CAVIN1Q6NZI2 390 aaKnown RBP22.28■■□□□ 1.16
USP39-202ENST00000409025 TMC4Q7Z404 712 aa22.28■■□□□ 1.16
USP39-202ENST00000409025 SDR42E1Q8WUS8 393 aa22.28■■□□□ 1.16
USP39-202ENST00000409025 BRIP1Q9BX63 1249 aa22.28■■□□□ 1.16
USP39-202ENST00000409025 ISY1Q9ULR0 285 aaKnown RBP22.28■■□□□ 1.16
USP39-202ENST00000409025 RGPD3A6NKT7 1758 aaPredicted RBP22.28■■□□□ 1.16
USP39-202ENST00000409025 RGPD4Q7Z3J3 1758 aa22.28■■□□□ 1.16
USP39-202ENST00000409025 NRXN2Q9P2S2 1712 aa22.27■■□□□ 1.16
USP39-202ENST00000409025 GOLGA8BA8MQT2 603 aa22.27■■□□□ 1.16
USP39-202ENST00000409025 SH2B2O14492 632 aaPredicted RBP22.27■■□□□ 1.16
USP39-202ENST00000409025 DYNLL1P63167 89 aaKnown RBP22.27■■□□□ 1.16
USP39-202ENST00000409025 RNF41Q9H4P4 317 aaPredicted RBP22.27■■□□□ 1.16
USP39-202ENST00000409025 H3BQV1 296 aa22.27■■□□□ 1.16
USP39-202ENST00000409025 PRDX5P30044 214 aa22.27■■□□□ 1.16
USP39-202ENST00000409025 PPARAQ07869 468 aa22.27■■□□□ 1.16
USP39-202ENST00000409025 IFFO2Q5TF58 517 aa22.27■■□□□ 1.16
USP39-202ENST00000409025 PODXL2Q9NZ53 605 aa22.27■■□□□ 1.16
USP39-202ENST00000409025 DNM1Q05193 864 aaKnown RBP22.26■■□□□ 1.15
USP39-202ENST00000409025 INCENPQ9NQS7 918 aa22.26■■□□□ 1.15
USP39-202ENST00000409025 ANKRD31Q8N7Z5 1873 aa22.26■■□□□ 1.15
USP39-202ENST00000409025 GIMAP6Q6P9H5 292 aa22.25■■□□□ 1.15
USP39-202ENST00000409025 FERMT3Q86UX7 667 aa22.25■■□□□ 1.15
USP39-202ENST00000409025 DZIP1Q86YF9 867 aaKnown RBP22.25■■□□□ 1.15
USP39-202ENST00000409025 NKX2-3Q8TAU0 364 aa22.25■■□□□ 1.15
USP39-202ENST00000409025 HPS5Q9UPZ3 1129 aa22.25■■□□□ 1.15
USP39-202ENST00000409025 JAG2Q9Y219 1238 aa22.25■■□□□ 1.15
USP39-202ENST00000409025 PARP3Q9Y6F1 533 aa22.25■■□□□ 1.15
USP39-202ENST00000409025 KDM4AO75164 1064 aa22.25■■□□□ 1.15
USP39-202ENST00000409025 GPR101Q96P66 508 aaPredicted RBP22.25■■□□□ 1.15
USP39-202ENST00000409025 ZSWIM5Q9P217 1185 aa22.25■■□□□ 1.15
USP39-202ENST00000409025 ANAPC4Q9UJX5 808 aa22.25■■□□□ 1.15
USP39-202ENST00000409025 MINDY4BA8MYZ0 360 aa22.24■■□□□ 1.15
USP39-202ENST00000409025 PPEF1O14829 653 aaPredicted RBP22.24■■□□□ 1.15
USP39-202ENST00000409025 FIBPO43427 364 aa22.24■■□□□ 1.15
USP39-202ENST00000409025 LDHBP07195 334 aaKnown RBP22.24■■□□□ 1.15
USP39-202ENST00000409025 TMEM67Q5HYA8 995 aa22.24■■□□□ 1.15
USP39-202ENST00000409025 SP8Q8IXZ3 490 aa22.24■■□□□ 1.15
USP39-202ENST00000409025 IGDCC4Q8TDY8 1250 aa22.24■■□□□ 1.15
USP39-202ENST00000409025 CRNKL1Q9BZJ0 848 aaKnown RBP22.24■■□□□ 1.15
USP39-202ENST00000409025 TOMM22Q9NS69 142 aa22.24■■□□□ 1.15
USP39-202ENST00000409025 RGS17Q9UGC6 210 aaPredicted RBP22.24■■□□□ 1.15
USP39-202ENST00000409025 TACC3Q9Y6A5 838 aa22.24■■□□□ 1.15
USP39-202ENST00000409025 MMP10P09238 476 aa22.23■■□□□ 1.15
USP39-202ENST00000409025 KRT85P78386 507 aa22.23■■□□□ 1.15
USP39-202ENST00000409025 AATFQ9NY61 560 aaKnown RBP eCLIP22.23■■□□□ 1.15
USP39-202ENST00000409025 LRRC37AA6NMS7 1700 aa22.23■■□□□ 1.15
USP39-202ENST00000409025 CPLX1O14810 134 aa22.23■■□□□ 1.15
USP39-202ENST00000409025 IFIT3O14879 490 aaKnown RBP22.23■■□□□ 1.15
USP39-202ENST00000409025 GADD45BO75293 160 aaPredicted RBP22.23■■□□□ 1.15
USP39-202ENST00000409025 LIFRP42702 1097 aa22.23■■□□□ 1.15
USP39-202ENST00000409025 RRP12Q5JTH9 1297 aaKnown RBP22.23■■□□□ 1.15
USP39-202ENST00000409025 NFXL1Q6ZNB6 911 aa22.23■■□□□ 1.15
USP39-202ENST00000409025 TBC1D16Q8TBP0 767 aa22.23■■□□□ 1.15
USP39-202ENST00000409025 ZSCAN16Q9H4T2 348 aaPredicted RBP22.23■■□□□ 1.15
USP39-202ENST00000409025 CD209Q9NNX6 404 aa22.23■■□□□ 1.15
USP39-202ENST00000409025 KIAA1551Q9HCM1 1747 aa22.23■■□□□ 1.15
USP39-202ENST00000409025 NPR1P16066 1061 aa22.22■■□□□ 1.15
USP39-202ENST00000409025 PDE6BP35913 854 aa22.22■■□□□ 1.15
USP39-202ENST00000409025 ZSCAN23Q3MJ62 389 aa22.22■■□□□ 1.15
USP39-202ENST00000409025 POTEAQ6S8J7 498 aa22.22■■□□□ 1.15
USP39-202ENST00000409025 SGMS1Q86VZ5 419 aa22.22■■□□□ 1.15
USP39-202ENST00000409025 MTA3Q9BTC8 594 aa22.22■■□□□ 1.15
USP39-202ENST00000409025 LY9Q9HBG7 655 aa22.22■■□□□ 1.15
USP39-202ENST00000409025 SRGNP10124 158 aa22.21■■□□□ 1.15
USP39-202ENST00000409025 GSTO1P78417 241 aa22.21■■□□□ 1.15
USP39-202ENST00000409025 SART3Q15020 963 aaKnown RBP22.21■■□□□ 1.15
USP39-202ENST00000409025 RBM27Q9P2N5 1060 aaKnown RBP22.21■■□□□ 1.15
USP39-202ENST00000409025 IL1R1P14778 569 aa22.21■■□□□ 1.15
USP39-202ENST00000409025 METAP2P50579 478 aaKnown RBP eCLIP22.21■■□□□ 1.152e-7■■■□□ 16.1
USP39-202ENST00000409025 UBE2HP62256 183 aa22.21■■□□□ 1.15
USP39-202ENST00000409025 APOA5Q6Q788 366 aa22.21■■□□□ 1.15
USP39-202ENST00000409025 RAB11FIP4Q86YS3 637 aa22.21■■□□□ 1.15
USP39-202ENST00000409025 SYAP1Q96A49 352 aaPredicted RBP22.21■■□□□ 1.15
USP39-202ENST00000409025 POLLQ9UGP5 575 aa22.21■■□□□ 1.15
USP39-202ENST00000409025 ATP6V0A2Q9Y487 856 aa22.21■■□□□ 1.15
USP39-202ENST00000409025 DUOX1Q9NRD9 1551 aa22.2■■□□□ 1.14
USP39-202ENST00000409025 C6orf229H3BNL8 230 aa22.2■■□□□ 1.14
USP39-202ENST00000409025 ALDH1B1P30837 517 aa22.2■■□□□ 1.14
USP39-202ENST00000409025 ZNF445P59923 1031 aa22.2■■□□□ 1.14
USP39-202ENST00000409025 RESTQ13127 1097 aa22.2■■□□□ 1.14
USP39-202ENST00000409025 STK11IPQ8N1F8 1099 aa22.2■■□□□ 1.14
USP39-202ENST00000409025 ATP8A2Q9NTI2 1148 aa22.2■■□□□ 1.14
USP39-202ENST00000409025 BAZ2AQ9UIF9 1905 aaKnown RBP22.2■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms