RNA–Protein interactions for RNA: ENST00000403076.5

SDC1-203, Transcript of syndecan 1, humanhuman

TSL 1 (best) BASIC

Gene SDC1, Length 1,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-203ENST00000403076 PLCG2P16885 1265 aa21.65■■□□□ 1.06
SDC1-203ENST00000403076 MMP14P50281 582 aa21.65■■□□□ 1.06
SDC1-203ENST00000403076 PPP4CP60510 307 aa21.65■■□□□ 1.06
SDC1-203ENST00000403076 DLGAP5Q15398 846 aa21.65■■□□□ 1.06
SDC1-203ENST00000403076 CERS3Q8IU89 383 aa21.65■■□□□ 1.06
SDC1-203ENST00000403076 MICALL2Q8IY33 904 aa21.65■■□□□ 1.06
SDC1-203ENST00000403076 CRNKL1Q9BZJ0 848 aaKnown RBP21.65■■□□□ 1.06
SDC1-203ENST00000403076 SLC4A4Q9Y6R1 1079 aa21.65■■□□□ 1.06
SDC1-203ENST00000403076 H7C1D1 291 aa21.64■■□□□ 1.05
SDC1-203ENST00000403076 GNAT2P19087 354 aa21.64■■□□□ 1.05
SDC1-203ENST00000403076 ZDHHC15Q96MV8 337 aa21.64■■□□□ 1.05
SDC1-203ENST00000403076 RBM26Q5T8P6 1007 aaKnown RBP21.63■■□□□ 1.05
SDC1-203ENST00000403076 LSG1Q9H089 658 aaKnown RBP21.63■■□□□ 1.05
SDC1-203ENST00000403076 USP40Q9NVE5 1235 aa21.63■■□□□ 1.05
SDC1-203ENST00000403076 PCDHAC2Q9Y5I4 1007 aa21.63■■□□□ 1.05
SDC1-203ENST00000403076 SHTN1A0MZ66 631 aa21.62■■□□□ 1.05
SDC1-203ENST00000403076 LMOD1P29536 600 aaPredicted RBP21.62■■□□□ 1.05
SDC1-203ENST00000403076 PTH1RQ03431 593 aa21.62■■□□□ 1.05
SDC1-203ENST00000403076 VPS53Q5VIR6 699 aa21.62■■□□□ 1.05
SDC1-203ENST00000403076 APOBEC3HQ6NTF7 200 aaKnown RBP21.62■■□□□ 1.05
SDC1-203ENST00000403076 TEX11Q8IYF3 940 aa21.62■■□□□ 1.05
SDC1-203ENST00000403076 SH3RF3Q8TEJ3 882 aaPredicted RBP21.62■■□□□ 1.05
SDC1-203ENST00000403076 MYOZ2Q9NPC6 264 aa21.62■■□□□ 1.05
SDC1-203ENST00000403076 PATL2C9JE40 543 aaKnown RBP21.61■■□□□ 1.05
SDC1-203ENST00000403076 PRKAB2O43741 272 aa21.61■■□□□ 1.05
SDC1-203ENST00000403076 HSPD1P10809 573 aaKnown RBP21.61■■□□□ 1.05
SDC1-203ENST00000403076 ZNF280AP59817 542 aaPredicted RBP21.61■■□□□ 1.05
SDC1-203ENST00000403076 GPRC5DQ9NZD1 345 aa21.61■■□□□ 1.05
SDC1-203ENST00000403076 USP5P45974 858 aa21.6■■□□□ 1.05
SDC1-203ENST00000403076 DDRGK1Q96HY6 314 aa21.6■■□□□ 1.05
SDC1-203ENST00000403076 DSCC1Q9BVC3 393 aa21.6■■□□□ 1.05
SDC1-203ENST00000403076 USP26Q9BXU7 913 aa21.6■■□□□ 1.05
SDC1-203ENST00000403076 NACAP1Q9BZK3 213 aa21.6■■□□□ 1.05
SDC1-203ENST00000403076 GLTPD2A6NH11 291 aa21.6■■□□□ 1.05
SDC1-203ENST00000403076 SPDYE2BA6NHP3 402 aa21.6■■□□□ 1.05
SDC1-203ENST00000403076 SPDYE6P0CI01 402 aa21.6■■□□□ 1.05
SDC1-203ENST00000403076 CDC42EP5Q6NZY7 148 aa21.6■■□□□ 1.05
SDC1-203ENST00000403076 MTMR14Q8NCE2 650 aa21.6■■□□□ 1.05
SDC1-203ENST00000403076 SDR42E1Q8WUS8 393 aa21.6■■□□□ 1.05
SDC1-203ENST00000403076 PRMT6Q96LA8 375 aaPredicted RBP21.6■■□□□ 1.05
SDC1-203ENST00000403076 U3KPZ7 1027 aaPredicted RBP21.6■■□□□ 1.05
SDC1-203ENST00000403076 RHBDL3P58872 404 aa21.59■■□□□ 1.05
SDC1-203ENST00000403076 TBC1D10BQ4KMP7 808 aaPredicted RBP21.59■■□□□ 1.05
SDC1-203ENST00000403076 SAMD7Q7Z3H4 446 aa21.59■■□□□ 1.05
SDC1-203ENST00000403076 TGFBRAP1Q8WUH2 860 aa21.59■■□□□ 1.05
SDC1-203ENST00000403076 MAP4K1Q92918 833 aa21.59■■□□□ 1.05
SDC1-203ENST00000403076 TDRD3Q9H7E2 651 aaKnown RBP21.59■■□□□ 1.05
SDC1-203ENST00000403076 TMOD2Q9NZR1 351 aa21.59■■□□□ 1.05
SDC1-203ENST00000403076 RPAP1Q9BWH6 1393 aaPredicted RBP21.58■■□□□ 1.05
SDC1-203ENST00000403076 GSG1L2A8MUP6 293 aa21.58■■□□□ 1.04
SDC1-203ENST00000403076 MYO1BO43795 1136 aa21.58■■□□□ 1.04
SDC1-203ENST00000403076 MCCP23508 829 aa21.58■■□□□ 1.04
SDC1-203ENST00000403076 EPS15P42566 896 aa21.58■■□□□ 1.04
SDC1-203ENST00000403076 TDO2P48775 406 aa21.58■■□□□ 1.04
SDC1-203ENST00000403076 KIF4BQ2VIQ3 1234 aa21.58■■□□□ 1.04
SDC1-203ENST00000403076 NAPBQ9H115 298 aa21.58■■□□□ 1.04
SDC1-203ENST00000403076 RBM8AQ9Y5S9 174 aaKnown RBP21.58■■□□□ 1.04
SDC1-203ENST00000403076 ADAMTSL1Q8N6G6 1762 aa21.58■■□□□ 1.04
SDC1-203ENST00000403076 EPB41L2O43491 1005 aaKnown RBP21.57■■□□□ 1.04
SDC1-203ENST00000403076 MAPKAPK5Q8IW41 473 aa21.57■■□□□ 1.04
SDC1-203ENST00000403076 IFNL3Q8IZI9 196 aa21.57■■□□□ 1.04
SDC1-203ENST00000403076 ATP8A2Q9NTI2 1148 aa21.57■■□□□ 1.04
SDC1-203ENST00000403076 CTNNA3Q9UI47 895 aa21.57■■□□□ 1.04
SDC1-203ENST00000403076 FGAP02671 866 aa21.56■■□□□ 1.04
SDC1-203ENST00000403076 PICALMQ13492 652 aa21.56■■□□□ 1.04
SDC1-203ENST00000403076 C22orf23Q9BZE7 217 aa21.56■■□□□ 1.04
SDC1-203ENST00000403076 CLRN2A0PK11 232 aa21.55■■□□□ 1.04
SDC1-203ENST00000403076 WNT10BO00744 389 aa21.55■■□□□ 1.04
SDC1-203ENST00000403076 FOXP2O15409 715 aa21.55■■□□□ 1.04
SDC1-203ENST00000403076 ALX1Q15699 326 aa21.55■■□□□ 1.04
SDC1-203ENST00000403076 NBPF9Q3BBW0 867 aa21.55■■□□□ 1.04
SDC1-203ENST00000403076 ZBED3Q96IU2 234 aaPredicted RBP21.55■■□□□ 1.04
SDC1-203ENST00000403076 L3MBTL3Q96JM7 780 aaPredicted RBP21.55■■□□□ 1.04
SDC1-203ENST00000403076 DCP1AQ9NPI6 582 aaPredicted RBP21.55■■□□□ 1.04
SDC1-203ENST00000403076 ZNF70Q9UC06 446 aaPredicted RBP21.55■■□□□ 1.04
SDC1-203ENST00000403076 HACL1Q9UJ83 578 aa21.55■■□□□ 1.04
SDC1-203ENST00000403076 CACNB3P54284 484 aa21.55■■□□□ 1.04
SDC1-203ENST00000403076 GIMAP6Q6P9H5 292 aa21.55■■□□□ 1.04
SDC1-203ENST00000403076 VEZTQ9HBM0 779 aa21.55■■□□□ 1.04
SDC1-203ENST00000403076 EPB41L4AQ9HCS5 686 aaPredicted RBP21.55■■□□□ 1.04
SDC1-203ENST00000403076 EGFRP00533 1210 aa21.54■■□□□ 1.04
SDC1-203ENST00000403076 RNF20Q5VTR2 975 aa21.54■■□□□ 1.04
SDC1-203ENST00000403076 ADARB2Q9NS39 739 aaKnown RBP21.54■■□□□ 1.04
SDC1-203ENST00000403076 WDHD1O75717 1129 aaPredicted RBP21.53■■□□□ 1.04
SDC1-203ENST00000403076 IMMTQ16891 758 aaKnown RBP21.53■■□□□ 1.04
SDC1-203ENST00000403076 SPDYE2Q495Y8 402 aa21.53■■□□□ 1.04
SDC1-203ENST00000403076 AMOTL1Q8IY63 956 aa21.53■■□□□ 1.04
SDC1-203ENST00000403076 TRPM4Q8TD43 1214 aa21.53■■□□□ 1.04
SDC1-203ENST00000403076 MCM9Q9NXL9 1143 aa21.53■■□□□ 1.04
SDC1-203ENST00000403076 FLT1P17948 1338 aa21.52■■□□□ 1.04
SDC1-203ENST00000403076 IQCA1LA6NCM1 817 aa21.52■■□□□ 1.04
SDC1-203ENST00000403076 POLR3DP05423 398 aaPredicted RBP21.52■■□□□ 1.04
SDC1-203ENST00000403076 NFIAQ12857 509 aa21.52■■□□□ 1.04
SDC1-203ENST00000403076 NECTIN1Q15223 517 aa21.52■■□□□ 1.04
SDC1-203ENST00000403076 SAP30BPQ9UHR5 308 aaKnown RBP21.52■■□□□ 1.04
SDC1-203ENST00000403076 ZMYM6O95789 1325 aa21.51■■□□□ 1.03
SDC1-203ENST00000403076 MINDY4BA8MYZ0 360 aa21.51■■□□□ 1.03
SDC1-203ENST00000403076 TCP10L2B9ZVM9 353 aa21.51■■□□□ 1.03
SDC1-203ENST00000403076 USP17L12C9JPN9 530 aa21.51■■□□□ 1.03
SDC1-203ENST00000403076 USP17L21D6R901 530 aa21.51■■□□□ 1.03
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms