RNA–Protein interactions for RNA: ENST00000398729.1

VCX3A-202, Transcript of variable charge X-linked 3A, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene VCX3A, Length 808 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCX3A-202ENST00000398729 CCDC102BQ68D86 513 aa16.59■□□□□ 0.25
VCX3A-202ENST00000398729 APOBEC3HQ6NTF7 200 aaKnown RBP16.59■□□□□ 0.25
VCX3A-202ENST00000398729 SZT2Q5T011 3432 aa16.59■□□□□ 0.25
VCX3A-202ENST00000398729 ZBTB22O15209 634 aa16.58■□□□□ 0.24
VCX3A-202ENST00000398729 LDHBP07195 334 aaKnown RBP16.58■□□□□ 0.24
VCX3A-202ENST00000398729 EN2P19622 333 aaPredicted RBP16.58■□□□□ 0.24
VCX3A-202ENST00000398729 G3BP1Q13283 466 aaKnown RBP eCLIP16.58■□□□□ 0.24
VCX3A-202ENST00000398729 ITPRIPQ8IWB1 547 aa16.58■□□□□ 0.24
VCX3A-202ENST00000398729 ANKRD13AQ8IZ07 590 aa16.58■□□□□ 0.24
VCX3A-202ENST00000398729 ZGPATQ8N5A5 531 aaKnown RBP16.58■□□□□ 0.24
VCX3A-202ENST00000398729 CD99L2Q8TCZ2 262 aa16.58■□□□□ 0.24
VCX3A-202ENST00000398729 XAGE2Q96GT9 111 aa16.58■□□□□ 0.24
VCX3A-202ENST00000398729 TEPSINQ96N21 525 aa16.58■□□□□ 0.24
VCX3A-202ENST00000398729 TMEM39BQ9GZU3 492 aa16.58■□□□□ 0.24
VCX3A-202ENST00000398729 SALL1Q9NSC2 1324 aa16.58■□□□□ 0.24
VCX3A-202ENST00000398729 TESPA1A2RU30 521 aaPredicted RBP16.57■□□□□ 0.24
VCX3A-202ENST00000398729 PRDX5P30044 214 aa16.57■□□□□ 0.24
VCX3A-202ENST00000398729 CACNB3P54284 484 aa16.57■□□□□ 0.24
VCX3A-202ENST00000398729 CRHR2Q13324 411 aa16.57■□□□□ 0.24
VCX3A-202ENST00000398729 MVPQ14764 893 aaKnown RBP16.57■□□□□ 0.24
VCX3A-202ENST00000398729 FKBP1CQ5VVH2 108 aa16.57■□□□□ 0.24
VCX3A-202ENST00000398729 FAM83AQ86UY5 434 aa16.57■□□□□ 0.24
VCX3A-202ENST00000398729 NEUROD6Q96NK8 337 aa16.57■□□□□ 0.24
VCX3A-202ENST00000398729 CDAN1Q8IWY9 1227 aa16.56■□□□□ 0.24
VCX3A-202ENST00000398729 ARMC5Q96C12 935 aa16.56■□□□□ 0.24
VCX3A-202ENST00000398729 DAGLAQ9Y4D2 1042 aa16.56■□□□□ 0.24
VCX3A-202ENST00000398729 PDS5AQ29RF7 1337 aaKnown RBP16.55■□□□□ 0.24
VCX3A-202ENST00000398729 RLBP1P12271 317 aa16.55■□□□□ 0.24
VCX3A-202ENST00000398729 RASGRF1Q13972 1273 aa16.55■□□□□ 0.24
VCX3A-202ENST00000398729 POLA2Q14181 598 aa16.55■□□□□ 0.24
VCX3A-202ENST00000398729 DIXDC1Q155Q3 683 aa16.55■□□□□ 0.24
VCX3A-202ENST00000398729 GORABQ5T7V8 394 aa16.55■□□□□ 0.24
VCX3A-202ENST00000398729 HOOK2Q96ED9 719 aa16.55■□□□□ 0.24
VCX3A-202ENST00000398729 ERO1AQ96HE7 468 aa16.55■□□□□ 0.24
VCX3A-202ENST00000398729 EFCC1Q9HA90 598 aa16.55■□□□□ 0.24
VCX3A-202ENST00000398729 TRIOBPQ9H2D6 2365 aa16.54■□□□□ 0.24
VCX3A-202ENST00000398729 ZBTB7BO15156 539 aaPredicted RBP16.54■□□□□ 0.24
VCX3A-202ENST00000398729 ATP8B2P98198 1209 aa16.54■□□□□ 0.24
VCX3A-202ENST00000398729 SP3Q02447 781 aa16.54■□□□□ 0.24
VCX3A-202ENST00000398729 SSH3Q8TE77 659 aa16.54■□□□□ 0.24
VCX3A-202ENST00000398729 MS4A4AQ96JQ5 239 aa16.54■□□□□ 0.24
VCX3A-202ENST00000398729 C1orf115Q9H7X2 142 aa16.54■□□□□ 0.24
VCX3A-202ENST00000398729 ABCF2Q9UG63 623 aa16.54■□□□□ 0.24
VCX3A-202ENST00000398729 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP16.54■□□□□ 0.24
VCX3A-202ENST00000398729 RANBP2P49792 3224 aaKnown RBP16.53■□□□□ 0.24
VCX3A-202ENST00000398729 RPAP1Q9BWH6 1393 aaPredicted RBP16.53■□□□□ 0.24
VCX3A-202ENST00000398729 OTOFQ9HC10 1997 aa16.53■□□□□ 0.24
VCX3A-202ENST00000398729 MAP3K9P80192 1104 aa16.53■□□□□ 0.24
VCX3A-202ENST00000398729 OS9Q13438 667 aaPredicted RBP16.53■□□□□ 0.24
VCX3A-202ENST00000398729 SPTY2D1Q68D10 685 aaPredicted RBP16.53■□□□□ 0.24
VCX3A-202ENST00000398729 CDC42EP5Q6NZY7 148 aa16.53■□□□□ 0.24
VCX3A-202ENST00000398729 DZIP1Q86YF9 867 aaKnown RBP16.53■□□□□ 0.24
VCX3A-202ENST00000398729 LAMB1P07942 1786 aa16.52■□□□□ 0.24
VCX3A-202ENST00000398729 SURF6O75683 361 aaKnown RBP16.52■□□□□ 0.24
VCX3A-202ENST00000398729 MS4A1P11836 297 aa16.52■□□□□ 0.24
VCX3A-202ENST00000398729 FXR1P51114 621 aaKnown RBP eCLIP16.52■□□□□ 0.24
VCX3A-202ENST00000398729 OTUD7BQ6GQQ9 843 aa16.52■□□□□ 0.24
VCX3A-202ENST00000398729 PPP1R3FQ6ZSY5 799 aaPredicted RBP16.52■□□□□ 0.24
VCX3A-202ENST00000398729 SLF2Q8IX21 1173 aa16.52■□□□□ 0.24
VCX3A-202ENST00000398729 DDX55Q8NHQ9 600 aaKnown RBP eCLIP16.52■□□□□ 0.24
VCX3A-202ENST00000398729 OPTNQ96CV9 577 aa16.52■□□□□ 0.24
VCX3A-202ENST00000398729 ELP3Q9H9T3 547 aa16.52■□□□□ 0.24
VCX3A-202ENST00000398729 CSADQ9Y600 493 aa16.52■□□□□ 0.24
VCX3A-202ENST00000398729 MYH2Q9UKX2 1941 aa16.52■□□□□ 0.23
VCX3A-202ENST00000398729 DCAF15Q66K64 600 aa16.51■□□□□ 0.23
VCX3A-202ENST00000398729 ERICH6Q7L0X2 663 aa16.51■□□□□ 0.23
VCX3A-202ENST00000398729 PANK1Q8TE04 598 aa16.51■□□□□ 0.23
VCX3A-202ENST00000398729 FAM151AQ8WW52 585 aa16.51■□□□□ 0.23
VCX3A-202ENST00000398729 CNKSR2Q8WXI2 1034 aa16.51■□□□□ 0.23
VCX3A-202ENST00000398729 ZNF333Q96JL9 665 aa16.51■□□□□ 0.23
VCX3A-202ENST00000398729 GPR108Q9NPR9 543 aa16.51■□□□□ 0.23
VCX3A-202ENST00000398729 USP40Q9NVE5 1235 aa16.51■□□□□ 0.23
VCX3A-202ENST00000398729 ARID4AP29374 1257 aaPredicted RBP16.5■□□□□ 0.23
VCX3A-202ENST00000398729 TCP10Q12799 353 aa16.5■□□□□ 0.23
VCX3A-202ENST00000398729 VGLL4Q14135 290 aa16.5■□□□□ 0.23
VCX3A-202ENST00000398729 SPATA5Q8NB90 893 aa16.5■□□□□ 0.23
VCX3A-202ENST00000398729 BRI3BPQ8WY22 251 aa16.5■□□□□ 0.23
VCX3A-202ENST00000398729 HMG20BQ9P0W2 317 aa16.5■□□□□ 0.23
VCX3A-202ENST00000398729 GAKO14976 1311 aa16.49■□□□□ 0.23
VCX3A-202ENST00000398729 AK9Q5TCS8 1911 aa16.49■□□□□ 0.23
VCX3A-202ENST00000398729 UQCRFS1P1P0C7P4 283 aa16.49■□□□□ 0.23
VCX3A-202ENST00000398729 NFIAQ12857 509 aa16.49■□□□□ 0.23
VCX3A-202ENST00000398729 TNNI3KQ59H18 835 aa16.49■□□□□ 0.23
VCX3A-202ENST00000398729 FAM163AQ96GL9 167 aaPredicted RBP16.49■□□□□ 0.23
VCX3A-202ENST00000398729 WRNIP1Q96S55 665 aa16.49■□□□□ 0.23
VCX3A-202ENST00000398729 COLQQ9Y215 455 aaPredicted RBP16.49■□□□□ 0.23
VCX3A-202ENST00000398729 NOP58Q9Y2X3 529 aaKnown RBP16.49■□□□□ 0.23
VCX3A-202ENST00000398729 FPGT-TNNI3KV9GXZ4 949 aa16.49■□□□□ 0.23
VCX3A-202ENST00000398729 CCDC158Q5M9N0 1113 aa16.48■□□□□ 0.23
VCX3A-202ENST00000398729 CEP85Q6P2H3 762 aa16.48■□□□□ 0.23
VCX3A-202ENST00000398729 PI16Q6UXB8 463 aa16.48■□□□□ 0.23
VCX3A-202ENST00000398729 MIGA2Q7L4E1 593 aa16.48■□□□□ 0.23
VCX3A-202ENST00000398729 ZNF341Q9BYN7 854 aa16.48■□□□□ 0.23
VCX3A-202ENST00000398729 FAM198AQ9UFP1 575 aa16.48■□□□□ 0.23
VCX3A-202ENST00000398729 PTCH2Q9Y6C5 1203 aa16.48■□□□□ 0.23
VCX3A-202ENST00000398729 RBBP6Q7Z6E9 1792 aaKnown RBP16.48■□□□□ 0.23
VCX3A-202ENST00000398729 SPDYE5A6NIY4 337 aa16.47■□□□□ 0.23
VCX3A-202ENST00000398729 MCAMP43121 646 aa16.47■□□□□ 0.23
VCX3A-202ENST00000398729 GTF2A2P52657 109 aa16.47■□□□□ 0.23
VCX3A-202ENST00000398729 GSTO1P78417 241 aa16.47■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms