RNA–Protein interactions for RNA: ENST00000395969.6

VPS41-203, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 5 BASIC

Gene VPS41, Length 3,181 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-203ENST00000395969 FAM89AQ96GI7 184 aa6.29□□□□□ -1.4
VPS41-203ENST00000395969 KDM4CQ9H3R0 1056 aa6.29□□□□□ -1.4
VPS41-203ENST00000395969 DENND2AQ9ULE3 1009 aa6.29□□□□□ -1.4
VPS41-203ENST00000395969 DICER1Q9UPY3 1922 aaKnown RBP6.29□□□□□ -1.4
VPS41-203ENST00000395969 TRIM6-TRIM34B2RNG4 842 aa6.29□□□□□ -1.4
VPS41-203ENST00000395969 KCNQ2O43526 872 aa6.29□□□□□ -1.4
VPS41-203ENST00000395969 CYP21A2P08686 494 aa6.29□□□□□ -1.4
VPS41-203ENST00000395969 PDCP20941 246 aa6.29□□□□□ -1.4
VPS41-203ENST00000395969 AK2P54819 239 aa6.29□□□□□ -1.4
VPS41-203ENST00000395969 IRX5P78411 483 aaPredicted RBP6.29□□□□□ -1.4
VPS41-203ENST00000395969 GRAPQ13588 217 aa6.29□□□□□ -1.4
VPS41-203ENST00000395969 ZGPATQ8N5A5 531 aaKnown RBP6.29□□□□□ -1.4
VPS41-203ENST00000395969 RNF214Q8ND24 703 aa6.29□□□□□ -1.4
VPS41-203ENST00000395969 GRAPLQ8TC17 118 aaPredicted RBP6.29□□□□□ -1.4
VPS41-203ENST00000395969 TMEM87BQ96K49 555 aa6.29□□□□□ -1.4
VPS41-203ENST00000395969 STRBPQ96SI9 672 aaKnown RBP6.29□□□□□ -1.4
VPS41-203ENST00000395969 NBPF3Q9H094 633 aa6.29□□□□□ -1.4
VPS41-203ENST00000395969 CCDC8Q9H0W5 538 aaPredicted RBP6.29□□□□□ -1.4
VPS41-203ENST00000395969 TCP11L1Q9NUJ3 509 aa6.29□□□□□ -1.4
VPS41-203ENST00000395969 RTCBQ9Y3I0 505 aaKnown RBP6.29□□□□□ -1.4
VPS41-203ENST00000395969 MYH1P12882 1939 aa6.29□□□□□ -1.4
VPS41-203ENST00000395969 RIOK3O14730 519 aaKnown RBP6.28□□□□□ -1.4
VPS41-203ENST00000395969 BBOX1O75936 387 aa6.28□□□□□ -1.4
VPS41-203ENST00000395969 TBC1D9BQ66K14 1250 aa6.28□□□□□ -1.4
VPS41-203ENST00000395969 LDHAL6AQ6ZMR3 332 aa6.28□□□□□ -1.4
VPS41-203ENST00000395969 SPATA5Q8NB90 893 aa6.28□□□□□ -1.4
VPS41-203ENST00000395969 ARHGEF1Q92888 912 aaKnown RBP6.28□□□□□ -1.4
VPS41-203ENST00000395969 RILPL2Q969X0 211 aa6.28□□□□□ -1.4
VPS41-203ENST00000395969 FSD1Q9BTV5 496 aa6.28□□□□□ -1.4
VPS41-203ENST00000395969 ANO2Q9NQ90 1003 aa6.28□□□□□ -1.4
VPS41-203ENST00000395969 SYNPO2Q9UMS6 1093 aa6.28□□□□□ -1.4
VPS41-203ENST00000395969 MINPP1Q9UNW1 487 aa6.28□□□□□ -1.4
VPS41-203ENST00000395969 GAKO14976 1311 aa6.28□□□□□ -1.4
VPS41-203ENST00000395969 MYH6P13533 1939 aa6.28□□□□□ -1.4
VPS41-203ENST00000395969 ERICH4A6NGS2 130 aa6.28□□□□□ -1.4
VPS41-203ENST00000395969 PATL2C9JE40 543 aaKnown RBP6.28□□□□□ -1.4
VPS41-203ENST00000395969 M0R2C6 588 aa6.28□□□□□ -1.4
VPS41-203ENST00000395969 ORC4O43929 436 aa6.28□□□□□ -1.4
VPS41-203ENST00000395969 ADAMTS2O95450 1211 aa6.28□□□□□ -1.4
VPS41-203ENST00000395969 IGHMBP2P38935 993 aaKnown RBP6.28□□□□□ -1.4
VPS41-203ENST00000395969 TPTE2Q6XPS3 522 aa6.28□□□□□ -1.4
VPS41-203ENST00000395969 TDRD7Q8NHU6 1098 aaKnown RBP6.28□□□□□ -1.4
VPS41-203ENST00000395969 KLHDC4Q8TBB5 520 aa6.28□□□□□ -1.4
VPS41-203ENST00000395969 KIAA1524Q8TCG1 905 aa6.28□□□□□ -1.4
VPS41-203ENST00000395969 OSBP2Q969R2 916 aa6.28□□□□□ -1.4
VPS41-203ENST00000395969 NEK1Q96PY6 1258 aa6.28□□□□□ -1.4
VPS41-203ENST00000395969 PSMD1Q99460 953 aa6.28□□□□□ -1.4
VPS41-203ENST00000395969 RIOK1Q9BRS2 568 aaKnown RBP6.28□□□□□ -1.4
VPS41-203ENST00000395969 CNNM2Q9H8M5 875 aa6.28□□□□□ -1.4
VPS41-203ENST00000395969 PDRG1Q9NUG6 133 aa6.28□□□□□ -1.4
VPS41-203ENST00000395969 POLRMTO00411 1230 aaKnown RBP6.28□□□□□ -1.4
VPS41-203ENST00000395969 GYS1P13807 737 aa6.28□□□□□ -1.4
VPS41-203ENST00000395969 SMARCA1P28370 1054 aa6.28□□□□□ -1.4
VPS41-203ENST00000395969 NEK4P51957 841 aa6.28□□□□□ -1.4
VPS41-203ENST00000395969 CHRNDQ07001 517 aa6.28□□□□□ -1.4
VPS41-203ENST00000395969 CWC27Q6UX04 472 aaKnown RBP6.28□□□□□ -1.4
VPS41-203ENST00000395969 TRAIPQ9BWF2 469 aa6.28□□□□□ -1.4
VPS41-203ENST00000395969 TTC12Q9H892 705 aaPredicted RBP6.28□□□□□ -1.4
VPS41-203ENST00000395969 PRDM16Q9HAZ2 1276 aa6.28□□□□□ -1.4
VPS41-203ENST00000395969 CCNL1Q9UK58 526 aaPredicted RBP6.28□□□□□ -1.4
VPS41-203ENST00000395969 ATP6V1DQ9Y5K8 247 aa6.28□□□□□ -1.4
VPS41-203ENST00000395969 MYH8P13535 1937 aa6.27□□□□□ -1.41
VPS41-203ENST00000395969 TULP2O00295 520 aa6.27□□□□□ -1.41
VPS41-203ENST00000395969 ADCK5Q3MIX3 580 aa6.27□□□□□ -1.41
VPS41-203ENST00000395969 TTC39AQ5SRH9 613 aa6.27□□□□□ -1.41
VPS41-203ENST00000395969 STOX1Q6ZVD7 989 aa6.27□□□□□ -1.41
VPS41-203ENST00000395969 KRT27Q7Z3Y8 459 aa6.27□□□□□ -1.41
VPS41-203ENST00000395969 C17orf53Q8N3J3 647 aaPredicted RBP6.27□□□□□ -1.41
VPS41-203ENST00000395969 SYAP1Q96A49 352 aaPredicted RBP6.27□□□□□ -1.41
VPS41-203ENST00000395969 C8orf37Q96NL8 207 aa6.27□□□□□ -1.41
VPS41-203ENST00000395969 BOLA2Q9H3K6 86 aa6.27□□□□□ -1.41
VPS41-203ENST00000395969 ZSCAN16Q9H4T2 348 aaPredicted RBP6.27□□□□□ -1.41
VPS41-203ENST00000395969 LRRC4BQ9NT99 713 aa6.27□□□□□ -1.41
VPS41-203ENST00000395969 DDX41Q9UJV9 622 aaKnown RBP6.27□□□□□ -1.41
VPS41-203ENST00000395969 NIP7Q9Y221 180 aaKnown RBP eCLIP6.27□□□□□ -1.41
VPS41-203ENST00000395969 PHF14O94880 888 aa6.27□□□□□ -1.41
VPS41-203ENST00000395969 PDE6AP16499 860 aa6.27□□□□□ -1.41
VPS41-203ENST00000395969 ADORA1P30542 326 aa6.27□□□□□ -1.41
VPS41-203ENST00000395969 NCBP1Q09161 790 aaKnown RBP6.27□□□□□ -1.41
VPS41-203ENST00000395969 ERFEQ4G0M1 354 aa6.27□□□□□ -1.41
VPS41-203ENST00000395969 METTL24Q5JXM2 366 aa6.27□□□□□ -1.41
VPS41-203ENST00000395969 TSHZ3Q63HK5 1081 aa6.27□□□□□ -1.41
VPS41-203ENST00000395969 STYK1Q6J9G0 422 aa6.27□□□□□ -1.41
VPS41-203ENST00000395969 BLOC1S2Q6QNY1 142 aa6.27□□□□□ -1.41
VPS41-203ENST00000395969 ANKRD18AQ8IVF6 992 aa6.27□□□□□ -1.41
VPS41-203ENST00000395969 SP8Q8IXZ3 490 aa6.27□□□□□ -1.41
VPS41-203ENST00000395969 PIH1D3Q9NQM4 214 aaKnown RBP6.27□□□□□ -1.41
VPS41-203ENST00000395969 FAM53CQ9NYF3 392 aa6.27□□□□□ -1.41
VPS41-203ENST00000395969 DDX52Q9Y2R4 599 aaKnown RBP eCLIP6.27□□□□□ -1.41
VPS41-203ENST00000395969 TCHHQ07283 1943 aa6.27□□□□□ -1.41
VPS41-203ENST00000395969 RBBP6Q7Z6E9 1792 aaKnown RBP6.27□□□□□ -1.41
VPS41-203ENST00000395969 E7EWF7 191 aa6.26□□□□□ -1.41
VPS41-203ENST00000395969 ADCY5O95622 1261 aa6.26□□□□□ -1.41
VPS41-203ENST00000395969 ZSCAN22P10073 491 aaPredicted RBP6.26□□□□□ -1.41
VPS41-203ENST00000395969 RASGRF1Q13972 1273 aa6.26□□□□□ -1.41
VPS41-203ENST00000395969 SCARF1Q14162 830 aa6.26□□□□□ -1.41
VPS41-203ENST00000395969 TRAPPC3LQ5T215 181 aa6.26□□□□□ -1.41
VPS41-203ENST00000395969 CHAMP1Q96JM3 812 aa6.26□□□□□ -1.41
VPS41-203ENST00000395969 TPCN1Q9ULQ1 816 aa6.26□□□□□ -1.41
VPS41-203ENST00000395969 MTMR6Q9Y217 621 aa6.26□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms