RNA–Protein interactions for RNA: ENST00000395066.7

CLK3-202, Transcript of CDC like kinase 3, humanhuman

TSL 1 (best) BASIC

Gene CLK3, Length 2,621 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-202ENST00000395066 PAPPAQ13219 1627 aa23.88■■□□□ 1.41
CLK3-202ENST00000395066 NCAPHQ15003 741 aa23.88■■□□□ 1.41
CLK3-202ENST00000395066 PLEKHG2Q9H7P9 1386 aa23.88■■□□□ 1.41
CLK3-202ENST00000395066 AKAP11Q9UKA4 1901 aa23.87■■□□□ 1.41
CLK3-202ENST00000395066 EVA1CP58658 441 aa23.87■■□□□ 1.41
CLK3-202ENST00000395066 KRT40Q6A162 431 aa23.87■■□□□ 1.41
CLK3-202ENST00000395066 ZNF771Q7L3S4 317 aaPredicted RBP23.87■■□□□ 1.41
CLK3-202ENST00000395066 ZNF397Q8NF99 534 aaPredicted RBP23.87■■□□□ 1.41
CLK3-202ENST00000395066 DDX24Q9GZR7 859 aaKnown RBP eCLIP23.87■■□□□ 1.411e-6■■□□□ 12.7
CLK3-202ENST00000395066 C4AP0C0L4 1744 aa23.87■■□□□ 1.41
CLK3-202ENST00000395066 C4BP0C0L5 1744 aa23.87■■□□□ 1.41
CLK3-202ENST00000395066 NLRP10Q86W26 655 aa23.87■■□□□ 1.41
CLK3-202ENST00000395066 CHMP4CQ96CF2 233 aa23.87■■□□□ 1.41
CLK3-202ENST00000395066 MYH7P12883 1935 aa23.87■■□□□ 1.41
CLK3-202ENST00000395066 ZMYM6O95789 1325 aa23.86■■□□□ 1.41
CLK3-202ENST00000395066 SH2B2O14492 632 aaPredicted RBP23.86■■□□□ 1.41
CLK3-202ENST00000395066 DCCP43146 1447 aa23.86■■□□□ 1.41
CLK3-202ENST00000395066 NLRP12P59046 1061 aa23.86■■□□□ 1.41
CLK3-202ENST00000395066 GNL2Q13823 731 aaKnown RBP23.86■■□□□ 1.41
CLK3-202ENST00000395066 APOA5Q6Q788 366 aa23.86■■□□□ 1.41
CLK3-202ENST00000395066 TOGARAM1Q9Y4F4 1720 aa23.86■■□□□ 1.41
CLK3-202ENST00000395066 PNOCQ13519 176 aa23.86■■□□□ 1.41
CLK3-202ENST00000395066 SHC4Q6S5L8 630 aa23.86■■□□□ 1.41
CLK3-202ENST00000395066 CARD10Q9BWT7 1032 aa23.86■■□□□ 1.41
CLK3-202ENST00000395066 SHANK3Q9BYB0 1731 aa23.86■■□□□ 1.41
CLK3-202ENST00000395066 NPHP1O15259 732 aa23.85■■□□□ 1.41
CLK3-202ENST00000395066 CMA1P23946 247 aa23.85■■□□□ 1.41
CLK3-202ENST00000395066 TRIM28Q13263 835 aaKnown RBP23.85■■□□□ 1.41
CLK3-202ENST00000395066 SLC39A14Q15043 492 aa23.85■■□□□ 1.41
CLK3-202ENST00000395066 SPECC1Q5M775 1068 aa23.85■■□□□ 1.41
CLK3-202ENST00000395066 E4F1Q66K89 784 aaPredicted RBP23.85■■□□□ 1.41
CLK3-202ENST00000395066 NFXL1Q6ZNB6 911 aa23.85■■□□□ 1.41
CLK3-202ENST00000395066 PLA2G12BQ9BX93 195 aa23.85■■□□□ 1.41
CLK3-202ENST00000395066 RANBP6O60518 1105 aaKnown RBP23.85■■□□□ 1.41
CLK3-202ENST00000395066 SYKP43405 635 aa23.85■■□□□ 1.41
CLK3-202ENST00000395066 CTSWP56202 376 aa23.85■■□□□ 1.41
CLK3-202ENST00000395066 KMT5BQ4FZB7 885 aa23.85■■□□□ 1.41
CLK3-202ENST00000395066 GIGYF2Q6Y7W6 1299 aaKnown RBP23.85■■□□□ 1.41
CLK3-202ENST00000395066 MAP3K15Q6ZN16 1313 aa23.85■■□□□ 1.41
CLK3-202ENST00000395066 PDE6AP16499 860 aa23.84■■□□□ 1.41
CLK3-202ENST00000395066 CTDSPL2Q05D32 466 aa23.84■■□□□ 1.41
CLK3-202ENST00000395066 GOLGA8FQ08AF8 430 aa23.84■■□□□ 1.41
CLK3-202ENST00000395066 GOLGA8DPQ0D2H9 430 aa23.84■■□□□ 1.41
CLK3-202ENST00000395066 CCDC102BQ68D86 513 aa23.84■■□□□ 1.41
CLK3-202ENST00000395066 ERO1AQ96HE7 468 aa23.84■■□□□ 1.41
CLK3-202ENST00000395066 OSBPL5Q9H0X9 879 aaPredicted RBP23.84■■□□□ 1.41
CLK3-202ENST00000395066 FBXO3Q9UK99 471 aa23.84■■□□□ 1.41
CLK3-202ENST00000395066 DDX60Q8IY21 1712 aaKnown RBP23.84■■□□□ 1.41
CLK3-202ENST00000395066 ANKRD18BA2A2Z9 1011 aa23.84■■□□□ 1.41
CLK3-202ENST00000395066 IRS4O14654 1257 aaPredicted RBP23.84■■□□□ 1.41
CLK3-202ENST00000395066 HSP90AA4PQ58FG1 418 aa23.84■■□□□ 1.41
CLK3-202ENST00000395066 VGLL2Q8N8G2 317 aa23.84■■□□□ 1.41
CLK3-202ENST00000395066 DPF2Q92785 391 aa23.84■■□□□ 1.41
CLK3-202ENST00000395066 HSD3B7Q9H2F3 369 aa23.84■■□□□ 1.41
CLK3-202ENST00000395066 KCND1Q9NSA2 647 aa23.84■■□□□ 1.41
CLK3-202ENST00000395066 TACC3Q9Y6A5 838 aa23.84■■□□□ 1.41
CLK3-202ENST00000395066 TRMT112Q9UI30 125 aaKnown RBP23.83■■□□□ 1.41
CLK3-202ENST00000395066 GSDMDP57764 484 aa23.83■■□□□ 1.41
CLK3-202ENST00000395066 CCDC82Q8N4S0 544 aa23.82■■□□□ 1.4
CLK3-202ENST00000395066 SLC4A9Q96Q91 983 aa23.82■■□□□ 1.4
CLK3-202ENST00000395066 TBC1D2BQ9UPU7 963 aa23.82■■□□□ 1.4
CLK3-202ENST00000395066 PTPAQ15257 358 aa23.82■■□□□ 1.4
CLK3-202ENST00000395066 KRT222Q8N1A0 295 aa23.82■■□□□ 1.4
CLK3-202ENST00000395066 ZKSCAN3Q9BRR0 538 aa23.82■■□□□ 1.4
CLK3-202ENST00000395066 FAM217BQ9NTX9 383 aaPredicted RBP23.82■■□□□ 1.4
CLK3-202ENST00000395066 FOXN1O15353 648 aa23.81■■□□□ 1.4
CLK3-202ENST00000395066 PDE8BO95263 885 aa23.81■■□□□ 1.4
CLK3-202ENST00000395066 FANCCQ00597 558 aa23.81■■□□□ 1.4
CLK3-202ENST00000395066 CMTR1Q8N1G2 835 aaKnown RBP23.81■■□□□ 1.4
CLK3-202ENST00000395066 BPIFA3Q9BQP9 254 aa23.81■■□□□ 1.4
CLK3-202ENST00000395066 KIF2AO00139 706 aaPredicted RBP23.81■■□□□ 1.4
CLK3-202ENST00000395066 ZBTB43O43298 467 aa23.81■■□□□ 1.4
CLK3-202ENST00000395066 SLFN14P0C7P3 912 aa23.81■■□□□ 1.4
CLK3-202ENST00000395066 ELF2Q15723 593 aa23.81■■□□□ 1.4
CLK3-202ENST00000395066 TMEM67Q5HYA8 995 aa23.81■■□□□ 1.4
CLK3-202ENST00000395066 LRRN4CLQ8ND94 238 aa23.81■■□□□ 1.4
CLK3-202ENST00000395066 IGDCC4Q8TDY8 1250 aa23.81■■□□□ 1.4
CLK3-202ENST00000395066 AIDAQ96BJ3 306 aa23.81■■□□□ 1.4
CLK3-202ENST00000395066 PPP1R13BQ96KQ4 1090 aa23.81■■□□□ 1.4
CLK3-202ENST00000395066 SLC26A6Q9BXS9 759 aa23.81■■□□□ 1.4
CLK3-202ENST00000395066 LY9Q9HBG7 655 aa23.81■■□□□ 1.4
CLK3-202ENST00000395066 EPB41L4AQ9HCS5 686 aaPredicted RBP23.81■■□□□ 1.4
CLK3-202ENST00000395066 ZBTB1Q9Y2K1 713 aa23.81■■□□□ 1.4
CLK3-202ENST00000395066 GOLGA8AA7E2F4 631 aa23.8■■□□□ 1.4
CLK3-202ENST00000395066 SLU7O95391 586 aaKnown RBP23.8■■□□□ 1.4
CLK3-202ENST00000395066 STARD3NLO95772 234 aa23.8■■□□□ 1.4
CLK3-202ENST00000395066 SFPQP23246 707 aaKnown RBP eCLIP23.8■■□□□ 1.4
CLK3-202ENST00000395066 GUCY1A2P33402 732 aa23.8■■□□□ 1.4
CLK3-202ENST00000395066 NTRK3Q16288 839 aa23.8■■□□□ 1.4
CLK3-202ENST00000395066 MAP3K14Q99558 947 aa23.8■■□□□ 1.4
CLK3-202ENST00000395066 UBN2Q6ZU65 1347 aa23.8■■□□□ 1.4
CLK3-202ENST00000395066 IARSP41252 1262 aaKnown RBP23.8■■□□□ 1.4
CLK3-202ENST00000395066 FBXO38Q6PIJ6 1188 aa23.8■■□□□ 1.4
CLK3-202ENST00000395066 TCRBV5S4A2TA0A5A2 114 aa23.8■■□□□ 1.4
CLK3-202ENST00000395066 LONRF3Q496Y0 759 aa23.8■■□□□ 1.4
CLK3-202ENST00000395066 RRP12Q5JTH9 1297 aaKnown RBP23.8■■□□□ 1.4
CLK3-202ENST00000395066 SYT10Q6XYQ8 523 aa23.8■■□□□ 1.4
CLK3-202ENST00000395066 STRBPQ96SI9 672 aaKnown RBP23.8■■□□□ 1.4
CLK3-202ENST00000395066 ARMT1Q9H993 441 aa23.8■■□□□ 1.4
CLK3-202ENST00000395066 IMPACTQ9P2X3 320 aa23.8■■□□□ 1.4
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms