RNA–Protein interactions for RNA: ENST00000394943.7

LIMA1-202, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,669 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-202ENST00000394943 TEKT1Q969V4 418 aa8.51□□□□□ -1.05
LIMA1-202ENST00000394943 NEUROD6Q96NK8 337 aa8.51□□□□□ -1.05
LIMA1-202ENST00000394943 LNPKQ9C0E8 428 aa8.51□□□□□ -1.05
LIMA1-202ENST00000394943 RAD17O75943 681 aa8.51□□□□□ -1.05
LIMA1-202ENST00000394943 TRPM4Q8TD43 1214 aa8.51□□□□□ -1.05
LIMA1-202ENST00000394943 WWC3Q9ULE0 1092 aa8.51□□□□□ -1.05
LIMA1-202ENST00000394943 GNAT2P19087 354 aa8.51□□□□□ -1.05
LIMA1-202ENST00000394943 MAP3K12Q12852 859 aa8.51□□□□□ -1.05
LIMA1-202ENST00000394943 KIF4BQ2VIQ3 1234 aa8.51□□□□□ -1.05
LIMA1-202ENST00000394943 NOL9Q5SY16 702 aaKnown RBP8.51□□□□□ -1.05
LIMA1-202ENST00000394943 CNTROBQ8N137 903 aa8.51□□□□□ -1.05
LIMA1-202ENST00000394943 IL27Q8NEV9 243 aa8.51□□□□□ -1.05
LIMA1-202ENST00000394943 CCDC136Q96JN2 1154 aa8.51□□□□□ -1.05
LIMA1-202ENST00000394943 ZNF219Q9P2Y4 722 aaPredicted RBP8.51□□□□□ -1.05
LIMA1-202ENST00000394943 BAZ2AQ9UIF9 1905 aaKnown RBP8.5□□□□□ -1.05
LIMA1-202ENST00000394943 SDSP20132 328 aa8.5□□□□□ -1.05
LIMA1-202ENST00000394943 EPS15P42566 896 aa8.5□□□□□ -1.05
LIMA1-202ENST00000394943 FKBP1BP68106 108 aa8.5□□□□□ -1.05
LIMA1-202ENST00000394943 GABPAQ06546 454 aa8.5□□□□□ -1.05
LIMA1-202ENST00000394943 CFAP100Q494V2 611 aa8.5□□□□□ -1.05
LIMA1-202ENST00000394943 CDC42EP5Q6NZY7 148 aa8.5□□□□□ -1.05
LIMA1-202ENST00000394943 DDX24Q9GZR7 859 aaKnown RBP eCLIP8.5□□□□□ -1.05
LIMA1-202ENST00000394943 ZNF70Q9UC06 446 aaPredicted RBP8.5□□□□□ -1.05
LIMA1-202ENST00000394943 FAM198AQ9UFP1 575 aa8.5□□□□□ -1.05
LIMA1-202ENST00000394943 TSGA10IPQ3SY00 556 aa8.5□□□□□ -1.05
LIMA1-202ENST00000394943 FAM151AQ8WW52 585 aa8.5□□□□□ -1.05
LIMA1-202ENST00000394943 STRBPQ96SI9 672 aaKnown RBP8.5□□□□□ -1.05
LIMA1-202ENST00000394943 MXD3Q9BW11 206 aa8.5□□□□□ -1.05
LIMA1-202ENST00000394943 VPS37DQ86XT2 251 aa8.5□□□□□ -1.05
LIMA1-202ENST00000394943 DSCC1Q9BVC3 393 aa8.5□□□□□ -1.05
LIMA1-202ENST00000394943 ATP8A2Q9NTI2 1148 aa8.5□□□□□ -1.05
LIMA1-202ENST00000394943 H7C1D1 291 aa8.49□□□□□ -1.05
LIMA1-202ENST00000394943 CHMLP26374 656 aa8.49□□□□□ -1.05
LIMA1-202ENST00000394943 RLFQ13129 1914 aa8.49□□□□□ -1.05
LIMA1-202ENST00000394943 ZNF784Q8NCA9 323 aaPredicted RBP8.49□□□□□ -1.05
LIMA1-202ENST00000394943 PRMT6Q96LA8 375 aaPredicted RBP8.49□□□□□ -1.05
LIMA1-202ENST00000394943 SYNPO2Q9UMS6 1093 aa8.49□□□□□ -1.05
LIMA1-202ENST00000394943 TTF2Q9UNY4 1162 aaKnown RBP8.49□□□□□ -1.05
LIMA1-202ENST00000394943 ZNF532Q9HCE3 1301 aa8.49□□□□□ -1.05
LIMA1-202ENST00000394943 SHTN1A0MZ66 631 aa8.49□□□□□ -1.05
LIMA1-202ENST00000394943 EGFRP00533 1210 aa8.49□□□□□ -1.05
LIMA1-202ENST00000394943 BOLA2Q9H3K6 86 aa8.49□□□□□ -1.05
LIMA1-202ENST00000394943 ZBTB12Q9Y330 459 aaPredicted RBP8.49□□□□□ -1.05
LIMA1-202ENST00000394943 OSBP2Q969R2 916 aa8.49□□□□□ -1.05
LIMA1-202ENST00000394943 APBB1O00213 710 aa8.48□□□□□ -1.05
LIMA1-202ENST00000394943 GOLIM4O00461 696 aa8.48□□□□□ -1.05
LIMA1-202ENST00000394943 PCP11498 1178 aaKnown RBP8.48□□□□□ -1.05
LIMA1-202ENST00000394943 CHADLQ6NUI6 762 aa8.48□□□□□ -1.05
LIMA1-202ENST00000394943 TATDN1Q6P1N9 297 aa8.48□□□□□ -1.05
LIMA1-202ENST00000394943 SH3BP5LQ7L8J4 393 aa8.48□□□□□ -1.05
LIMA1-202ENST00000394943 TBC1D2Q9BYX2 928 aa8.48□□□□□ -1.05
LIMA1-202ENST00000394943 SGSM2O43147 1006 aa8.48□□□□□ -1.05
LIMA1-202ENST00000394943 LMOD1P29536 600 aaPredicted RBP8.48□□□□□ -1.05
LIMA1-202ENST00000394943 NAA16Q6N069 864 aaPredicted RBP8.48□□□□□ -1.05
LIMA1-202ENST00000394943 FBXL16Q8N461 479 aa8.48□□□□□ -1.05
LIMA1-202ENST00000394943 DHX36Q9H2U1 1008 aaKnown RBP8.48□□□□□ -1.05
LIMA1-202ENST00000394943 M0R2C6 588 aa8.48□□□□□ -1.05
LIMA1-202ENST00000394943 TOMM70O94826 608 aa8.48□□□□□ -1.05
LIMA1-202ENST00000394943 GORABQ5T7V8 394 aa8.48□□□□□ -1.05
LIMA1-202ENST00000394943 OSBPL5Q9H0X9 879 aaPredicted RBP8.48□□□□□ -1.05
LIMA1-202ENST00000394943 FLT1P17948 1338 aa8.47□□□□□ -1.05
LIMA1-202ENST00000394943 BTDP43251 543 aa8.47□□□□□ -1.05
LIMA1-202ENST00000394943 LDLRAD1Q5T700 205 aa8.47□□□□□ -1.05
LIMA1-202ENST00000394943 B4GALNT3Q6L9W6 998 aa8.47□□□□□ -1.05
LIMA1-202ENST00000394943 MTA3Q9BTC8 594 aa8.47□□□□□ -1.05
LIMA1-202ENST00000394943 PUS7LQ9H0K6 701 aaKnown RBP8.47□□□□□ -1.05
LIMA1-202ENST00000394943 GSG1L2A8MUP6 293 aa8.47□□□□□ -1.05
LIMA1-202ENST00000394943 PHF20L1A8MW92 1017 aa8.47□□□□□ -1.05
LIMA1-202ENST00000394943 PATL2C9JE40 543 aaKnown RBP8.47□□□□□ -1.05
LIMA1-202ENST00000394943 EIF5BO60841 1220 aaKnown RBP8.47□□□□□ -1.05
LIMA1-202ENST00000394943 BAG3O95817 575 aa8.47□□□□□ -1.05
LIMA1-202ENST00000394943 DLGAP5Q15398 846 aa8.47□□□□□ -1.05
LIMA1-202ENST00000394943 MCMDC2Q4G0Z9 681 aa8.47□□□□□ -1.05
LIMA1-202ENST00000394943 TBC1D9Q6ZT07 1266 aa8.47□□□□□ -1.05
LIMA1-202ENST00000394943 OGFOD1Q8N543 542 aa8.47□□□□□ -1.05
LIMA1-202ENST00000394943 DDX4Q9NQI0 724 aaKnown RBP8.47□□□□□ -1.05
LIMA1-202ENST00000394943 ZNF236Q9UL36 1845 aa8.47□□□□□ -1.05
LIMA1-202ENST00000394943 TNFAIP1Q13829 316 aa8.47□□□□□ -1.05
LIMA1-202ENST00000394943 MAGEB6Q8N7X4 407 aa8.47□□□□□ -1.05
LIMA1-202ENST00000394943 SMC1BQ8NDV3 1235 aa8.47□□□□□ -1.05
LIMA1-202ENST00000394943 RRAGCQ9HB90 399 aa8.47□□□□□ -1.05
LIMA1-202ENST00000394943 DDX52Q9Y2R4 599 aaKnown RBP eCLIP8.47□□□□□ -1.05
LIMA1-202ENST00000394943 NID2Q14112 1375 aa8.46□□□□□ -1.05
LIMA1-202ENST00000394943 CCDC171Q6TFL3 1326 aa8.46□□□□□ -1.05
LIMA1-202ENST00000394943 IGKV6D-41A0A0C4DH26 115 aa8.46□□□□□ -1.05
LIMA1-202ENST00000394943 NBPF9Q3BBW0 867 aa8.46□□□□□ -1.05
LIMA1-202ENST00000394943 SLC9C2Q5TAH2 1124 aa8.46□□□□□ -1.05
LIMA1-202ENST00000394943 HOOK2Q96ED9 719 aa8.46□□□□□ -1.05
LIMA1-202ENST00000394943 EDC3Q96F86 508 aaKnown RBP8.46□□□□□ -1.05
LIMA1-202ENST00000394943 EPB41L4AQ9HCS5 686 aaPredicted RBP8.46□□□□□ -1.05
LIMA1-202ENST00000394943 NMRK2Q9NPI5 230 aa8.46□□□□□ -1.05
LIMA1-202ENST00000394943 MFAP1P55081 439 aaKnown RBP8.46□□□□□ -1.06
LIMA1-202ENST00000394943 KIAA0825Q8IV33 1275 aa8.46□□□□□ -1.06
LIMA1-202ENST00000394943 MAP4K1Q92918 833 aa8.46□□□□□ -1.06
LIMA1-202ENST00000394943 LSG1Q9H089 658 aaKnown RBP8.46□□□□□ -1.06
LIMA1-202ENST00000394943 DCP1AQ9NPI6 582 aaPredicted RBP8.46□□□□□ -1.06
LIMA1-202ENST00000394943 PCDHAC2Q9Y5I4 1007 aa8.46□□□□□ -1.06
LIMA1-202ENST00000394943 WDR19Q8NEZ3 1342 aa8.46□□□□□ -1.06
LIMA1-202ENST00000394943 A0A0D9SFI3 127 aa8.45□□□□□ -1.06
LIMA1-202ENST00000394943 MAGEB6P1A0A0J9YX57 407 aa8.45□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms