RNA–Protein interactions for RNA: ENST00000394299.6

GPC3-202, Transcript of glypican 3, humanhuman

TSL 1 (best) BASIC

Gene GPC3, Length 2,379 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPC3-202ENST00000394299 ORC3Q9UBD5 711 aaPredicted RBP17.67■□□□□ 0.42
GPC3-202ENST00000394299 UBE2Q2LH0YL09 131 aa17.67■□□□□ 0.42
GPC3-202ENST00000394299 TRIM37O94972 964 aa17.67■□□□□ 0.42
GPC3-202ENST00000394299 NAA16Q6N069 864 aaPredicted RBP17.67■□□□□ 0.42
GPC3-202ENST00000394299 MICU3Q86XE3 530 aa17.67■□□□□ 0.42
GPC3-202ENST00000394299 GPR101Q96P66 508 aaPredicted RBP17.67■□□□□ 0.42
GPC3-202ENST00000394299 CYP2D7A0A087X1C5 515 aa17.66■□□□□ 0.42
GPC3-202ENST00000394299 MINDY4BA8MYZ0 360 aa17.66■□□□□ 0.42
GPC3-202ENST00000394299 CPLX1O14810 134 aa17.66■□□□□ 0.42
GPC3-202ENST00000394299 EVX2Q03828 476 aa17.66■□□□□ 0.42
GPC3-202ENST00000394299 AKNAD1Q5T1N1 836 aa17.66■□□□□ 0.42
GPC3-202ENST00000394299 ZSCAN16Q9H4T2 348 aaPredicted RBP17.66■□□□□ 0.42
GPC3-202ENST00000394299 ELP1O95163 1332 aa17.66■□□□□ 0.42
GPC3-202ENST00000394299 PNPLA7Q6ZV29 1317 aa17.66■□□□□ 0.42
GPC3-202ENST00000394299 MAGEB6P1A0A0J9YX57 407 aa17.66■□□□□ 0.42
GPC3-202ENST00000394299 PHKBQ93100 1093 aa17.66■□□□□ 0.42
GPC3-202ENST00000394299 USP28Q96RU2 1077 aa17.66■□□□□ 0.42
GPC3-202ENST00000394299 PPP1R9BQ96SB3 815 aa17.66■□□□□ 0.42
GPC3-202ENST00000394299 LY9Q9HBG7 655 aa17.66■□□□□ 0.42
GPC3-202ENST00000394299 DOCK2Q92608 1830 aa17.65■□□□□ 0.42
GPC3-202ENST00000394299 CASZ1Q86V15 1759 aa17.65■□□□□ 0.42
GPC3-202ENST00000394299 RGL2O15211 777 aa17.65■□□□□ 0.42
GPC3-202ENST00000394299 HIBADHP31937 336 aaKnown RBP17.65■□□□□ 0.42
GPC3-202ENST00000394299 CCDC173Q0VFZ6 552 aa17.65■□□□□ 0.42
GPC3-202ENST00000394299 TMEM67Q5HYA8 995 aa17.65■□□□□ 0.42
GPC3-202ENST00000394299 APOA5Q6Q788 366 aa17.65■□□□□ 0.42
GPC3-202ENST00000394299 NFXL1Q6ZNB6 911 aa17.65■□□□□ 0.42
GPC3-202ENST00000394299 MFSD6Q6ZSS7 791 aa17.65■□□□□ 0.42
GPC3-202ENST00000394299 FAM43AQ8N2R8 423 aa17.65■□□□□ 0.42
GPC3-202ENST00000394299 RIOK1Q9BRS2 568 aaKnown RBP17.65■□□□□ 0.42
GPC3-202ENST00000394299 DACT1Q9NYF0 836 aa17.65■□□□□ 0.42
GPC3-202ENST00000394299 GOLGA6L4A6NEF3 574 aa17.65■□□□□ 0.42
GPC3-202ENST00000394299 IFIT3O14879 490 aaKnown RBP17.65■□□□□ 0.42
GPC3-202ENST00000394299 POLR3DP05423 398 aaPredicted RBP17.65■□□□□ 0.42
GPC3-202ENST00000394299 ANP32BQ92688 251 aaKnown RBP17.65■□□□□ 0.42
GPC3-202ENST00000394299 WDR19Q8NEZ3 1342 aa17.64■□□□□ 0.41
GPC3-202ENST00000394299 PRDX5P30044 214 aa17.64■□□□□ 0.41
GPC3-202ENST00000394299 METAP2P50579 478 aaKnown RBP eCLIP17.64■□□□□ 0.41
GPC3-202ENST00000394299 NACAP1Q9BZK3 213 aa17.64■□□□□ 0.41
GPC3-202ENST00000394299 NR1I2O75469 434 aa17.64■□□□□ 0.41
GPC3-202ENST00000394299 CNBD1Q8NA66 436 aa17.64■□□□□ 0.41
GPC3-202ENST00000394299 TRIM44Q96DX7 344 aaPredicted RBP17.64■□□□□ 0.41
GPC3-202ENST00000394299 C8orf76Q96K31 380 aa17.64■□□□□ 0.41
GPC3-202ENST00000394299 FAM217BQ9NTX9 383 aaPredicted RBP17.64■□□□□ 0.41
GPC3-202ENST00000394299 C4BP0C0L5 1744 aa17.63■□□□□ 0.41
GPC3-202ENST00000394299 SBF2Q86WG5 1849 aa17.63■□□□□ 0.41
GPC3-202ENST00000394299 TAF1LQ8IZX4 1826 aa17.63■□□□□ 0.41
GPC3-202ENST00000394299 GNAT2P19087 354 aa17.63■□□□□ 0.41
GPC3-202ENST00000394299 MECOMQ03112 1051 aa17.63■□□□□ 0.41
GPC3-202ENST00000394299 PPARAQ07869 468 aa17.63■□□□□ 0.41
GPC3-202ENST00000394299 PRR5LQ6MZQ0 368 aa17.63■□□□□ 0.41
GPC3-202ENST00000394299 CKAP2LQ8IYA6 745 aa17.63■□□□□ 0.41
GPC3-202ENST00000394299 ANKIB1Q9P2G1 1089 aa17.63■□□□□ 0.41
GPC3-202ENST00000394299 KIF3AQ9Y496 699 aa17.63■□□□□ 0.41
GPC3-202ENST00000394299 GOLGB1Q14789 3259 aaKnown RBP17.63■□□□□ 0.41
GPC3-202ENST00000394299 DHX16O60231 1041 aaKnown RBP17.62■□□□□ 0.41
GPC3-202ENST00000394299 GYS1P13807 737 aa17.62■□□□□ 0.41
GPC3-202ENST00000394299 BICD2Q8TD16 824 aa17.62■□□□□ 0.41
GPC3-202ENST00000394299 NSUN4Q96CB9 384 aaKnown RBP17.62■□□□□ 0.41
GPC3-202ENST00000394299 FUCA2Q9BTY2 467 aa17.62■□□□□ 0.41
GPC3-202ENST00000394299 KIF28PB7ZC32 967 aa17.62■□□□□ 0.41
GPC3-202ENST00000394299 FBXO18Q8NFZ0 1043 aa17.62■□□□□ 0.41
GPC3-202ENST00000394299 TMEM87BQ96K49 555 aa17.62■□□□□ 0.41
GPC3-202ENST00000394299 ANKRD2Q9GZV1 360 aa17.62■□□□□ 0.41
GPC3-202ENST00000394299 CFAP45Q9UL16 551 aa17.62■□□□□ 0.41
GPC3-202ENST00000394299 LY75O60449 1722 aa17.62■□□□□ 0.41
GPC3-202ENST00000394299 ZMYM6O95789 1325 aa17.62■□□□□ 0.41
GPC3-202ENST00000394299 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP17.61■□□□□ 0.41
GPC3-202ENST00000394299 ZBTB43O43298 467 aa17.61■□□□□ 0.41
GPC3-202ENST00000394299 PRDM1O75626 825 aa17.61■□□□□ 0.41
GPC3-202ENST00000394299 CMTR1Q8N1G2 835 aaKnown RBP17.61■□□□□ 0.41
GPC3-202ENST00000394299 CCDC82Q8N4S0 544 aa17.61■□□□□ 0.41
GPC3-202ENST00000394299 STAG1Q8WVM7 1258 aa17.61■□□□□ 0.41
GPC3-202ENST00000394299 AATFQ9NY61 560 aaKnown RBP eCLIP17.61■□□□□ 0.411e-13■■■■■ 127.7
GPC3-202ENST00000394299 A0A1B0GUL6 1792 aa17.61■□□□□ 0.41
GPC3-202ENST00000394299 RANBP6O60518 1105 aaKnown RBP17.61■□□□□ 0.41
GPC3-202ENST00000394299 PROM2Q8N271 834 aa17.61■□□□□ 0.41
GPC3-202ENST00000394299 TNRC6CQ9HCJ0 1690 aaKnown RBP17.61■□□□□ 0.41
GPC3-202ENST00000394299 NTRK3Q16288 839 aa17.6■□□□□ 0.41
GPC3-202ENST00000394299 SLC4A8Q2Y0W8 1093 aa17.6■□□□□ 0.41
GPC3-202ENST00000394299 KRT27Q7Z3Y8 459 aa17.6■□□□□ 0.41
GPC3-202ENST00000394299 RCOR1Q9UKL0 485 aa17.6■□□□□ 0.41
GPC3-202ENST00000394299 COL24A1Q17RW2 1714 aa17.6■□□□□ 0.41
GPC3-202ENST00000394299 GOLGA8AA7E2F4 631 aa17.6■□□□□ 0.41
GPC3-202ENST00000394299 LETM1O95202 739 aaPredicted RBP17.6■□□□□ 0.41
GPC3-202ENST00000394299 GRAPQ13588 217 aa17.6■□□□□ 0.41
GPC3-202ENST00000394299 GRAPLQ8TC17 118 aaPredicted RBP17.6■□□□□ 0.41
GPC3-202ENST00000394299 KRT23Q9C075 422 aa17.6■□□□□ 0.41
GPC3-202ENST00000394299 NUP62CLQ9H1M0 184 aa17.6■□□□□ 0.41
GPC3-202ENST00000394299 SLC12A7Q9Y666 1083 aa17.6■□□□□ 0.41
GPC3-202ENST00000394299 CLIC4Q9Y696 253 aa17.6■□□□□ 0.41
GPC3-202ENST00000394299 IRS2Q9Y4H2 1338 aa17.59■□□□□ 0.41
GPC3-202ENST00000394299 C4AP0C0L4 1744 aa17.59■□□□□ 0.41
GPC3-202ENST00000394299 CCDC69A6NI79 296 aa17.59■□□□□ 0.41
GPC3-202ENST00000394299 SERPINB2P05120 415 aa17.59■□□□□ 0.41
GPC3-202ENST00000394299 GRIK5Q16478 980 aa17.59■□□□□ 0.41
GPC3-202ENST00000394299 SGMS1Q86VZ5 419 aa17.59■□□□□ 0.41
GPC3-202ENST00000394299 PDLIM2Q96JY6 352 aa17.59■□□□□ 0.41
GPC3-202ENST00000394299 CNNM2Q9H8M5 875 aa17.59■□□□□ 0.41
GPC3-202ENST00000394299 CACNA1SQ13698 1873 aa17.59■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms