RNA–Protein interactions for RNA: ENST00000378839.1

CCDC3-202, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CCDC3, Length 3,180 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-202ENST00000378839 NTRK3Q16288 839 aa15.63■□□□□ 0.09
CCDC3-202ENST00000378839 FMR1NBQ8N0W7 255 aaPredicted RBP15.63■□□□□ 0.09
CCDC3-202ENST00000378839 FSIP1Q8NA03 581 aa15.63■□□□□ 0.09
CCDC3-202ENST00000378839 LINC00116Q8NCU8 138 aa15.63■□□□□ 0.09
CCDC3-202ENST00000378839 TDRD7Q8NHU6 1098 aaKnown RBP15.63■□□□□ 0.09
CCDC3-202ENST00000378839 THRAP3Q9Y2W1 955 aaKnown RBP15.63■□□□□ 0.09
CCDC3-202ENST00000378839 ZMYM6O95789 1325 aa15.62■□□□□ 0.09
CCDC3-202ENST00000378839 ZNF165P49910 485 aa15.62■□□□□ 0.09
CCDC3-202ENST00000378839 NDUFA8P51970 172 aa15.62■□□□□ 0.09
CCDC3-202ENST00000378839 ZNF396Q96N95 335 aaPredicted RBP15.62■□□□□ 0.09
CCDC3-202ENST00000378839 TAOK2Q9UL54 1235 aa15.62■□□□□ 0.09
CCDC3-202ENST00000378839 KIF3AQ9Y496 699 aa15.62■□□□□ 0.09
CCDC3-202ENST00000378839 ECM29Q5VYK3 1845 aa15.62■□□□□ 0.09
CCDC3-202ENST00000378839 COL1A1P02452 1464 aaPredicted RBP15.62■□□□□ 0.09
CCDC3-202ENST00000378839 ALX1Q15699 326 aa15.62■□□□□ 0.09
CCDC3-202ENST00000378839 ERFEQ4G0M1 354 aa15.62■□□□□ 0.09
CCDC3-202ENST00000378839 SASS6Q6UVJ0 657 aa15.62■□□□□ 0.09
CCDC3-202ENST00000378839 PLA2G4DQ86XP0 818 aa15.62■□□□□ 0.09
CCDC3-202ENST00000378839 STK11IPQ8N1F8 1099 aa15.62■□□□□ 0.09
CCDC3-202ENST00000378839 MYSM1Q5VVJ2 828 aa15.61■□□□□ 0.09
CCDC3-202ENST00000378839 MICU3Q86XE3 530 aa15.61■□□□□ 0.09
CCDC3-202ENST00000378839 MIGA1Q8NAN2 632 aa15.61■□□□□ 0.09
CCDC3-202ENST00000378839 CDCA7Q9BWT1 371 aaPredicted RBP15.61■□□□□ 0.09
CCDC3-202ENST00000378839 PTGS1P23219 599 aa15.61■□□□□ 0.09
CCDC3-202ENST00000378839 FAM160A1Q05DH4 1040 aa15.61■□□□□ 0.09
CCDC3-202ENST00000378839 NOLC1Q14978 699 aaKnown RBP eCLIP15.61■□□□□ 0.09
CCDC3-202ENST00000378839 CCDC152Q4G0S7 254 aa15.61■□□□□ 0.09
CCDC3-202ENST00000378839 ATL3Q6DD88 541 aa15.61■□□□□ 0.09
CCDC3-202ENST00000378839 CPLX1O14810 134 aa15.61■□□□□ 0.09
CCDC3-202ENST00000378839 METAP2P50579 478 aaKnown RBP eCLIP15.61■□□□□ 0.09
CCDC3-202ENST00000378839 PRDM10Q9NQV6 1147 aa15.61■□□□□ 0.09
CCDC3-202ENST00000378839 COL5A3P25940 1745 aaPredicted RBP15.6■□□□□ 0.09
CCDC3-202ENST00000378839 WDHD1O75717 1129 aaPredicted RBP15.6■□□□□ 0.09
CCDC3-202ENST00000378839 TRDNQ13061 729 aa15.6■□□□□ 0.09
CCDC3-202ENST00000378839 PARP10Q53GL7 1025 aa15.6■□□□□ 0.09
CCDC3-202ENST00000378839 ZKSCAN3Q9BRR0 538 aa15.6■□□□□ 0.09
CCDC3-202ENST00000378839 CICQ96RK0 1608 aaPredicted RBP15.6■□□□□ 0.09
CCDC3-202ENST00000378839 LAMB2P55268 1798 aa15.6■□□□□ 0.09
CCDC3-202ENST00000378839 BCORQ6W2J9 1755 aa15.6■□□□□ 0.09
CCDC3-202ENST00000378839 RTL9Q8NET4 1388 aa15.6■□□□□ 0.09
CCDC3-202ENST00000378839 ZNF75DP51815 510 aa15.6■□□□□ 0.09
CCDC3-202ENST00000378839 AXDND1Q5T1B0 1012 aaPredicted RBP15.6■□□□□ 0.09
CCDC3-202ENST00000378839 DHX40Q8IX18 779 aaKnown RBP15.6■□□□□ 0.09
CCDC3-202ENST00000378839 DHX16O60231 1041 aaKnown RBP15.59■□□□□ 0.09
CCDC3-202ENST00000378839 GYG1P46976 350 aa15.59■□□□□ 0.09
CCDC3-202ENST00000378839 MAP3K12Q12852 859 aa15.59■□□□□ 0.09
CCDC3-202ENST00000378839 ADALQ6DHV7 355 aa15.59■□□□□ 0.09
CCDC3-202ENST00000378839 POLR3EQ9NVU0 708 aa15.59■□□□□ 0.09
CCDC3-202ENST00000378839 GUCY1A2P33402 732 aa15.59■□□□□ 0.09
CCDC3-202ENST00000378839 KIAA1524Q8TCG1 905 aa15.59■□□□□ 0.09
CCDC3-202ENST00000378839 ZNF384Q8TF68 577 aa15.59■□□□□ 0.09
CCDC3-202ENST00000378839 SPTLC3Q9NUV7 552 aa15.59■□□□□ 0.09
CCDC3-202ENST00000378839 MROH7-TTC4A0A0A0MT08 1334 aa15.59■□□□□ 0.09
CCDC3-202ENST00000378839 CASZ1Q86V15 1759 aa15.59■□□□□ 0.09
CCDC3-202ENST00000378839 LRMPQ12912 555 aa15.59■□□□□ 0.09
CCDC3-202ENST00000378839 FBXW7Q969H0 707 aa15.59■□□□□ 0.09
CCDC3-202ENST00000378839 ALG1Q9BT22 464 aa15.59■□□□□ 0.09
CCDC3-202ENST00000378839 NAPBQ9H115 298 aa15.59■□□□□ 0.09
CCDC3-202ENST00000378839 BCL2L12Q9HB09 334 aa15.59■□□□□ 0.09
CCDC3-202ENST00000378839 TIAM2Q8IVF5 1701 aa15.58■□□□□ 0.09
CCDC3-202ENST00000378839 TPM2P07951 284 aa15.58■□□□□ 0.08
CCDC3-202ENST00000378839 IGHMBP2P38935 993 aaKnown RBP15.58■□□□□ 0.08
CCDC3-202ENST00000378839 CCDC144BQ3MJ40 725 aa15.58■□□□□ 0.08
CCDC3-202ENST00000378839 TMEM67Q5HYA8 995 aa15.58■□□□□ 0.08
CCDC3-202ENST00000378839 KRT40Q6A162 431 aa15.58■□□□□ 0.08
CCDC3-202ENST00000378839 BARGINQ6ZT62 677 aa15.58■□□□□ 0.08
CCDC3-202ENST00000378839 SLC51AQ86UW1 340 aa15.58■□□□□ 0.08
CCDC3-202ENST00000378839 SGMS1Q86VZ5 419 aa15.58■□□□□ 0.08
CCDC3-202ENST00000378839 AMIGO3Q86WK7 504 aa15.58■□□□□ 0.08
CCDC3-202ENST00000378839 MRPS27Q92552 414 aaKnown RBP15.58■□□□□ 0.08
CCDC3-202ENST00000378839 A0A1B0GUL6 1792 aa15.58■□□□□ 0.08
CCDC3-202ENST00000378839 KLRK1P26718 216 aa15.58■□□□□ 0.08
CCDC3-202ENST00000378839 CCDC73Q6ZRK6 1079 aa15.58■□□□□ 0.08
CCDC3-202ENST00000378839 SLC4A4Q9Y6R1 1079 aa15.58■□□□□ 0.08
CCDC3-202ENST00000378839 SPTLC2O15270 562 aa15.57■□□□□ 0.08
CCDC3-202ENST00000378839 EVX2Q03828 476 aa15.57■□□□□ 0.08
CCDC3-202ENST00000378839 FAM98CQ17RN3 349 aaKnown RBP15.57■□□□□ 0.08
CCDC3-202ENST00000378839 CCDC186Q7Z3E2 898 aa15.57■□□□□ 0.08
CCDC3-202ENST00000378839 CMTR1Q8N1G2 835 aaKnown RBP15.57■□□□□ 0.08
CCDC3-202ENST00000378839 SDR42E1Q8WUS8 393 aa15.57■□□□□ 0.08
CCDC3-202ENST00000378839 CHD4Q14839 1912 aa15.57■□□□□ 0.08
CCDC3-202ENST00000378839 ZBTB43O43298 467 aa15.57■□□□□ 0.08
CCDC3-202ENST00000378839 STK38Q15208 465 aa15.57■□□□□ 0.08
CCDC3-202ENST00000378839 AKNAD1Q5T1N1 836 aa15.57■□□□□ 0.08
CCDC3-202ENST00000378839 ANO1Q5XXA6 986 aa15.57■□□□□ 0.08
CCDC3-202ENST00000378839 TMEM87BQ96K49 555 aa15.57■□□□□ 0.08
CCDC3-202ENST00000378839 A0A1W2PQ27 194 aa15.57■□□□□ 0.08
CCDC3-202ENST00000378839 A0A1W2PQ64 194 aa15.57■□□□□ 0.08
CCDC3-202ENST00000378839 A0A1W2PQD8 194 aa15.57■□□□□ 0.08
CCDC3-202ENST00000378839 ZNF804BA4D1E1 1349 aa15.57■□□□□ 0.08
CCDC3-202ENST00000378839 MARCKSP29966 332 aaPredicted RBP15.57■□□□□ 0.08
CCDC3-202ENST00000378839 BICDL1Q6ZP65 573 aa15.57■□□□□ 0.08
CCDC3-202ENST00000378839 VPS37DQ86XT2 251 aa15.57■□□□□ 0.08
CCDC3-202ENST00000378839 TRIM5Q9C035 493 aa15.57■□□□□ 0.08
CCDC3-202ENST00000378839 PNPLA7Q6ZV29 1317 aa15.56■□□□□ 0.08
CCDC3-202ENST00000378839 KINO60870 393 aaKnown RBP15.56■□□□□ 0.08
CCDC3-202ENST00000378839 TERF1P54274 439 aa15.56■□□□□ 0.08
CCDC3-202ENST00000378839 TBC1D9BQ66K14 1250 aa15.56■□□□□ 0.08
CCDC3-202ENST00000378839 BRAPQ7Z569 592 aa15.56■□□□□ 0.08
CCDC3-202ENST00000378839 CELF1Q92879 486 aaKnown RBP15.56■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 9.3 ms