RNA–Protein interactions for RNA: ENST00000378026.4

CKAP4-201, Transcript of cytoskeleton associated protein 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CKAP4, Length 3,093 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKAP4-201ENST00000378026 ADAMTS13Q76LX8 1427 aa18.2■□□□□ 0.5
CKAP4-201ENST00000378026 M0R2C6 588 aa18.19■□□□□ 0.5
CKAP4-201ENST00000378026 BMP6P22004 513 aa18.19■□□□□ 0.5
CKAP4-201ENST00000378026 RFX5P48382 616 aaPredicted RBP18.19■□□□□ 0.5
CKAP4-201ENST00000378026 ANKZF1Q9H8Y5 726 aa18.19■□□□□ 0.5
CKAP4-201ENST00000378026 SH3TC1Q8TE82 1336 aa18.19■□□□□ 0.5
CKAP4-201ENST00000378026 ABCC6O95255 1503 aa18.19■□□□□ 0.5
CKAP4-201ENST00000378026 STX10O60499 249 aa18.19■□□□□ 0.5
CKAP4-201ENST00000378026 WASHC4Q2M389 1173 aa18.19■□□□□ 0.5
CKAP4-201ENST00000378026 TMEM2Q9UHN6 1383 aa18.19■□□□□ 0.5
CKAP4-201ENST00000378026 GOLGA6L9A6NEM1 432 aa18.19■□□□□ 0.5
CKAP4-201ENST00000378026 GTF2A1P52655 376 aaPredicted RBP18.19■□□□□ 0.5
CKAP4-201ENST00000378026 FKBP4Q02790 459 aaKnown RBP eCLIP18.19■□□□□ 0.5
CKAP4-201ENST00000378026 SPECC1LQ69YQ0 1117 aa18.19■□□□□ 0.5
CKAP4-201ENST00000378026 EFCC1Q9HA90 598 aa18.19■□□□□ 0.5
CKAP4-201ENST00000378026 MAP2K7O14733 419 aa18.18■□□□□ 0.5
CKAP4-201ENST00000378026 FMR1Q06787 632 aaKnown RBP eCLIP18.18■□□□□ 0.5
CKAP4-201ENST00000378026 BEND6Q5SZJ8 279 aaPredicted RBP18.18■□□□□ 0.5
CKAP4-201ENST00000378026 HELLSQ9NRZ9 838 aa18.18■□□□□ 0.5
CKAP4-201ENST00000378026 CUTAO60888 179 aa18.18■□□□□ 0.5
CKAP4-201ENST00000378026 BRD3Q15059 726 aa18.18■□□□□ 0.5
CKAP4-201ENST00000378026 KIF4BQ2VIQ3 1234 aa18.18■□□□□ 0.5
CKAP4-201ENST00000378026 ZNF569Q5MCW4 686 aa18.18■□□□□ 0.5
CKAP4-201ENST00000378026 HDXQ7Z353 690 aa18.18■□□□□ 0.5
CKAP4-201ENST00000378026 SRGAP1Q7Z6B7 1085 aa18.18■□□□□ 0.5
CKAP4-201ENST00000378026 IP6K1Q92551 441 aa18.18■□□□□ 0.5
CKAP4-201ENST00000378026 C19orf44Q9H6X5 657 aa18.18■□□□□ 0.5
CKAP4-201ENST00000378026 SAMSN1Q9NSI8 373 aaKnown RBP18.18■□□□□ 0.5
CKAP4-201ENST00000378026 RNF216Q9NWF9 866 aaPredicted RBP18.18■□□□□ 0.5
CKAP4-201ENST00000378026 HPS5Q9UPZ3 1129 aa18.18■□□□□ 0.5
CKAP4-201ENST00000378026 A0A087WZG4 1122 aa18.17■□□□□ 0.5
CKAP4-201ENST00000378026 FAM69CQ0P6D2 419 aa18.17■□□□□ 0.5
CKAP4-201ENST00000378026 ZMYM1Q5SVZ6 1142 aa18.17■□□□□ 0.5
CKAP4-201ENST00000378026 CCDC102BQ68D86 513 aa18.17■□□□□ 0.5
CKAP4-201ENST00000378026 LMBR1LQ6UX01 489 aa18.17■□□□□ 0.5
CKAP4-201ENST00000378026 VPS37DQ86XT2 251 aa18.17■□□□□ 0.5
CKAP4-201ENST00000378026 GRAMD1CQ8IYS0 662 aa18.17■□□□□ 0.5
CKAP4-201ENST00000378026 PHKBQ93100 1093 aa18.17■□□□□ 0.5
CKAP4-201ENST00000378026 TOPAZ1Q8N9V7 1692 aa18.17■□□□□ 0.5
CKAP4-201ENST00000378026 PIK3C2AO00443 1686 aa18.17■□□□□ 0.5
CKAP4-201ENST00000378026 GOLGA6L1Q8N7Z2 621 aa18.17■□□□□ 0.5
CKAP4-201ENST00000378026 ALG1Q9BT22 464 aa18.17■□□□□ 0.5
CKAP4-201ENST00000378026 PSD3Q9NYI0 1048 aa18.17■□□□□ 0.5
CKAP4-201ENST00000378026 OSBP2Q969R2 916 aa18.17■□□□□ 0.5
CKAP4-201ENST00000378026 RBM33Q96EV2 1170 aaKnown RBP18.17■□□□□ 0.5
CKAP4-201ENST00000378026 IFIT1P09914 478 aaKnown RBP18.16■□□□□ 0.5
CKAP4-201ENST00000378026 CCDC175P0C221 793 aa18.16■□□□□ 0.5
CKAP4-201ENST00000378026 TBX2Q13207 712 aaPredicted RBP18.16■□□□□ 0.5
CKAP4-201ENST00000378026 KCNH3Q9ULD8 1083 aa18.16■□□□□ 0.5
CKAP4-201ENST00000378026 DENND2AQ9ULE3 1009 aa18.16■□□□□ 0.5
CKAP4-201ENST00000378026 ANKRD13DQ6ZTN6 518 aa18.16■□□□□ 0.5
CKAP4-201ENST00000378026 PACS2Q86VP3 889 aa18.16■□□□□ 0.5
CKAP4-201ENST00000378026 METTL22Q9BUU2 404 aaPredicted RBP18.16■□□□□ 0.5
CKAP4-201ENST00000378026 LAMA4Q16363 1823 aa18.15■□□□□ 0.5
CKAP4-201ENST00000378026 HSP90B2PQ58FF3 399 aa18.15■□□□□ 0.5
CKAP4-201ENST00000378026 OSCARQ8IYS5 282 aa18.15■□□□□ 0.5
CKAP4-201ENST00000378026 RGPD8O14715 1765 aaPredicted RBP18.15■□□□□ 0.5
CKAP4-201ENST00000378026 UBE2Q2LH0YL09 131 aa18.15■□□□□ 0.5
CKAP4-201ENST00000378026 VSNL1P62760 191 aa18.15■□□□□ 0.5
CKAP4-201ENST00000378026 NOM1Q5C9Z4 860 aaKnown RBP18.15■□□□□ 0.5
CKAP4-201ENST00000378026 RALYLQ86SE5 291 aaKnown RBP18.15■□□□□ 0.5
CKAP4-201ENST00000378026 RGS22Q8NE09 1264 aa18.15■□□□□ 0.5
CKAP4-201ENST00000378026 HPSEQ9Y251 543 aa18.15■□□□□ 0.5
CKAP4-201ENST00000378026 EIF3CLB5ME19 914 aaKnown RBP18.14■□□□□ 0.5
CKAP4-201ENST00000378026 RNF113AO15541 343 aaKnown RBP18.14■□□□□ 0.5
CKAP4-201ENST00000378026 TEX33O43247 280 aa18.14■□□□□ 0.5
CKAP4-201ENST00000378026 KIF5CO60282 957 aa18.14■□□□□ 0.5
CKAP4-201ENST00000378026 EIF3JO75822 258 aaKnown RBP18.14■□□□□ 0.5
CKAP4-201ENST00000378026 IVLP07476 585 aa18.14■□□□□ 0.5
CKAP4-201ENST00000378026 PRR29P0C7W0 189 aa18.14■□□□□ 0.5
CKAP4-201ENST00000378026 KRT40Q6A162 431 aa18.14■□□□□ 0.5
CKAP4-201ENST00000378026 KLHL10Q6JEL2 608 aa18.14■□□□□ 0.5
CKAP4-201ENST00000378026 RAD9BQ6WBX8 426 aa18.14■□□□□ 0.5
CKAP4-201ENST00000378026 EIF3CQ99613 913 aaKnown RBP18.14■□□□□ 0.5
CKAP4-201ENST00000378026 ATP2B1P20020 1258 aa18.14■□□□□ 0.49
CKAP4-201ENST00000378026 IMMTQ16891 758 aaKnown RBP18.14■□□□□ 0.49
CKAP4-201ENST00000378026 TTC31Q49AM3 519 aaPredicted RBP18.14■□□□□ 0.49
CKAP4-201ENST00000378026 JMYQ8N9B5 988 aa18.14■□□□□ 0.49
CKAP4-201ENST00000378026 ZNF594Q96JF6 807 aaPredicted RBP18.14■□□□□ 0.49
CKAP4-201ENST00000378026 DRC1Q96MC2 740 aa18.14■□□□□ 0.49
CKAP4-201ENST00000378026 CDC5LQ99459 802 aaKnown RBP18.14■□□□□ 0.49
CKAP4-201ENST00000378026 RAI14Q9P0K7 980 aa18.14■□□□□ 0.49
CKAP4-201ENST00000378026 AKAP2Q9Y2D5 859 aa18.14■□□□□ 0.49
CKAP4-201ENST00000378026 PALLDQ8WX93 1383 aa18.14■□□□□ 0.49
CKAP4-201ENST00000378026 ERLIN1O75477 346 aa18.14■□□□□ 0.49
CKAP4-201ENST00000378026 ABL1P00519 1130 aa18.14■□□□□ 0.49
CKAP4-201ENST00000378026 STX17P56962 302 aa18.14■□□□□ 0.49
CKAP4-201ENST00000378026 LMOD2Q6P5Q4 547 aa18.14■□□□□ 0.49
CKAP4-201ENST00000378026 CDC23Q9UJX2 597 aa18.14■□□□□ 0.49
CKAP4-201ENST00000378026 FGAP02671 866 aa18.13■□□□□ 0.49
CKAP4-201ENST00000378026 GNL3Q9BVP2 549 aaKnown RBP eCLIP18.13■□□□□ 0.49
CKAP4-201ENST00000378026 TEX13AQ9BXU3 409 aaPredicted RBP18.13■□□□□ 0.49
CKAP4-201ENST00000378026 MAN1B1Q9UKM7 699 aa18.13■□□□□ 0.49
CKAP4-201ENST00000378026 L1RE1Q9UN81 338 aa18.13■□□□□ 0.49
CKAP4-201ENST00000378026 A0A1B0GUL7 405 aa18.13■□□□□ 0.49
CKAP4-201ENST00000378026 CASP8Q14790 479 aa18.13■□□□□ 0.49
CKAP4-201ENST00000378026 ICE2Q659A1 982 aa18.13■□□□□ 0.49
CKAP4-201ENST00000378026 PXDNQ92626 1479 aa18.12■□□□□ 0.49
CKAP4-201ENST00000378026 TNRQ92752 1358 aa18.12■□□□□ 0.49
CKAP4-201ENST00000378026 PLEKHG2Q9H7P9 1386 aa18.12■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 253.2 ms