RNA–Protein interactions for RNA: ENST00000375405.7

SCN1A-202, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,097 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-202ENST00000375405 ZNF131P52739 623 aa5.18□□□□□ -1.58
SCN1A-202ENST00000375405 IDI1Q13907 227 aa5.18□□□□□ -1.58
SCN1A-202ENST00000375405 FLOT2Q14254 428 aa5.18□□□□□ -1.58
SCN1A-202ENST00000375405 ARMC2Q8NEN0 867 aa5.18□□□□□ -1.58
SCN1A-202ENST00000375405 CEP19Q96LK0 163 aa5.18□□□□□ -1.58
SCN1A-202ENST00000375405 PTCD1O75127 700 aaKnown RBP5.17□□□□□ -1.58
SCN1A-202ENST00000375405 VCPP55072 806 aaKnown RBP5.17□□□□□ -1.58
SCN1A-202ENST00000375405 MAP3K21Q5TCX8 1036 aa5.17□□□□□ -1.58
SCN1A-202ENST00000375405 WASF1Q92558 559 aa5.17□□□□□ -1.58
SCN1A-202ENST00000375405 NDEL1Q9GZM8 345 aa5.17□□□□□ -1.58
SCN1A-202ENST00000375405 ANGPTL3Q9Y5C1 460 aa5.17□□□□□ -1.58
SCN1A-202ENST00000375405 SLC4A7Q9Y6M7 1214 aa5.17□□□□□ -1.58
SCN1A-202ENST00000375405 CEP164Q9UPV0 1460 aa5.17□□□□□ -1.58
SCN1A-202ENST00000375405 ABCC8Q09428 1581 aa5.17□□□□□ -1.58
SCN1A-202ENST00000375405 TNIKQ9UKE5 1360 aa5.17□□□□□ -1.58
SCN1A-202ENST00000375405 A0A087WZG4 1122 aa5.17□□□□□ -1.58
SCN1A-202ENST00000375405 CCDC194A0A1B0GVG4 234 aa5.17□□□□□ -1.58
SCN1A-202ENST00000375405 PMS1P54277 932 aaKnown RBP5.17□□□□□ -1.58
SCN1A-202ENST00000375405 IFI16Q16666 785 aaKnown RBP5.17□□□□□ -1.58
SCN1A-202ENST00000375405 L3MBTL2Q969R5 705 aa5.17□□□□□ -1.58
SCN1A-202ENST00000375405 RBM27Q9P2N5 1060 aaKnown RBP5.17□□□□□ -1.58
SCN1A-202ENST00000375405 GNGT2O14610 69 aa5.17□□□□□ -1.58
SCN1A-202ENST00000375405 RILPL1Q5EBL4 403 aa5.17□□□□□ -1.58
SCN1A-202ENST00000375405 TJAP1Q5JTD0 557 aa5.17□□□□□ -1.58
SCN1A-202ENST00000375405 CTCFLQ8NI51 663 aaPredicted RBP5.17□□□□□ -1.58
SCN1A-202ENST00000375405 SELENOOQ9BVL4 669 aa5.17□□□□□ -1.58
SCN1A-202ENST00000375405 C6orf203Q9P0P8 240 aaPredicted RBP5.17□□□□□ -1.58
SCN1A-202ENST00000375405 URI1O94763 535 aaPredicted RBP5.17□□□□□ -1.58
SCN1A-202ENST00000375405 CCDC159P0C7I6 412 aa5.17□□□□□ -1.58
SCN1A-202ENST00000375405 LIG3P49916 1009 aa5.17□□□□□ -1.58
SCN1A-202ENST00000375405 GNAI1P63096 354 aa5.17□□□□□ -1.58
SCN1A-202ENST00000375405 WASHC5Q12768 1159 aa5.17□□□□□ -1.58
SCN1A-202ENST00000375405 METTL24Q5JXM2 366 aa5.17□□□□□ -1.58
SCN1A-202ENST00000375405 KRT82Q9NSB4 513 aa5.17□□□□□ -1.58
SCN1A-202ENST00000375405 DOLKQ9UPQ8 538 aa5.17□□□□□ -1.58
SCN1A-202ENST00000375405 ORC6Q9Y5N6 252 aa5.17□□□□□ -1.58
SCN1A-202ENST00000375405 ESPNB1AK53 854 aa5.17□□□□□ -1.58
SCN1A-202ENST00000375405 TIPRLO75663 272 aa5.17□□□□□ -1.58
SCN1A-202ENST00000375405 S100BP04271 92 aaPredicted RBP5.17□□□□□ -1.58
SCN1A-202ENST00000375405 NUP62P37198 522 aaPredicted RBP5.17□□□□□ -1.58
SCN1A-202ENST00000375405 TCIRG1Q13488 830 aa5.17□□□□□ -1.58
SCN1A-202ENST00000375405 CCDC30Q5VVM6 783 aa5.17□□□□□ -1.58
SCN1A-202ENST00000375405 PGBD3Q8N328 593 aa5.17□□□□□ -1.58
SCN1A-202ENST00000375405 CCHCR1Q8TD31 782 aa5.17□□□□□ -1.58
SCN1A-202ENST00000375405 CACTINQ8WUQ7 758 aaKnown RBP5.17□□□□□ -1.58
SCN1A-202ENST00000375405 HDAC11Q96DB2 347 aa5.17□□□□□ -1.58
SCN1A-202ENST00000375405 PKD2L1Q9P0L9 805 aa5.17□□□□□ -1.58
SCN1A-202ENST00000375405 SCOCQ9UIL1 159 aa5.17□□□□□ -1.58
SCN1A-202ENST00000375405 SBDSQ9Y3A5 250 aaKnown RBP eCLIP5.17□□□□□ -1.58
SCN1A-202ENST00000375405 SOGA1O94964 1423 aa5.17□□□□□ -1.58
SCN1A-202ENST00000375405 POTEB2H3BUK9 544 aa5.17□□□□□ -1.58
SCN1A-202ENST00000375405 STX10O60499 249 aa5.17□□□□□ -1.58
SCN1A-202ENST00000375405 TATP17735 454 aaPredicted RBP5.17□□□□□ -1.58
SCN1A-202ENST00000375405 ARL4DP49703 201 aa5.17□□□□□ -1.58
SCN1A-202ENST00000375405 CAMK4Q16566 473 aa5.17□□□□□ -1.58
SCN1A-202ENST00000375405 CAPRIN2Q6IMN6 1127 aaKnown RBP5.17□□□□□ -1.58
SCN1A-202ENST00000375405 TMTC1Q8IUR5 882 aa5.17□□□□□ -1.58
SCN1A-202ENST00000375405 OSCP1Q8WVF1 389 aa5.17□□□□□ -1.58
SCN1A-202ENST00000375405 HOOK2Q96ED9 719 aa5.17□□□□□ -1.58
SCN1A-202ENST00000375405 CARD10Q9BWT7 1032 aa5.17□□□□□ -1.58
SCN1A-202ENST00000375405 ANAPC5Q9UJX4 755 aa5.17□□□□□ -1.58
SCN1A-202ENST00000375405 ARHGDIAP52565 204 aa5.16□□□□□ -1.58
SCN1A-202ENST00000375405 ESRRGP62508 458 aa5.16□□□□□ -1.58
SCN1A-202ENST00000375405 UBE3AQ05086 875 aa5.16□□□□□ -1.58
SCN1A-202ENST00000375405 TAF11Q15544 211 aa5.16□□□□□ -1.58
SCN1A-202ENST00000375405 C11orf88Q6PI97 169 aa5.16□□□□□ -1.58
SCN1A-202ENST00000375405 LVRNQ6Q4G3 990 aa5.16□□□□□ -1.58
SCN1A-202ENST00000375405 SCYL1Q96KG9 808 aa5.16□□□□□ -1.58
SCN1A-202ENST00000375405 CAPZA3Q96KX2 299 aa5.16□□□□□ -1.58
SCN1A-202ENST00000375405 RILPQ96NA2 401 aa5.16□□□□□ -1.58
SCN1A-202ENST00000375405 GRPEL1Q9HAV7 217 aa5.16□□□□□ -1.58
SCN1A-202ENST00000375405 RIC8AQ9NPQ8 531 aa5.16□□□□□ -1.58
SCN1A-202ENST00000375405 AIPL1Q9NZN9 384 aa5.16□□□□□ -1.58
SCN1A-202ENST00000375405 PCK1P35558 622 aa5.16□□□□□ -1.58
SCN1A-202ENST00000375405 EHHADHQ08426 723 aa5.16□□□□□ -1.58
SCN1A-202ENST00000375405 IQCB1Q15051 598 aa5.16□□□□□ -1.58
SCN1A-202ENST00000375405 BTN2A1Q7KYR7 527 aa5.16□□□□□ -1.58
SCN1A-202ENST00000375405 MTERF4Q7Z6M4 381 aaKnown RBP5.16□□□□□ -1.58
SCN1A-202ENST00000375405 ABI1Q8IZP0 508 aa5.16□□□□□ -1.58
SCN1A-202ENST00000375405 ZFP42Q96MM3 310 aa5.16□□□□□ -1.58
SCN1A-202ENST00000375405 TCP11L1Q9NUJ3 509 aa5.16□□□□□ -1.58
SCN1A-202ENST00000375405 NUP155O75694 1391 aa5.16□□□□□ -1.58
SCN1A-202ENST00000375405 ABCD1P33897 745 aa5.16□□□□□ -1.58
SCN1A-202ENST00000375405 PICALMQ13492 652 aa5.16□□□□□ -1.58
SCN1A-202ENST00000375405 WDR60Q8WVS4 1066 aa5.16□□□□□ -1.58
SCN1A-202ENST00000375405 JDP2Q8WYK2 163 aa5.16□□□□□ -1.58
SCN1A-202ENST00000375405 MRPS26Q9BYN8 205 aaKnown RBP5.16□□□□□ -1.58
SCN1A-202ENST00000375405 ANKRD12Q6UB98 2062 aa5.16□□□□□ -1.58
SCN1A-202ENST00000375405 CAVIN2O95810 425 aa5.16□□□□□ -1.58
SCN1A-202ENST00000375405 SLC4A2P04920 1241 aa5.16□□□□□ -1.58
SCN1A-202ENST00000375405 SKIP12755 728 aa5.16□□□□□ -1.58
SCN1A-202ENST00000375405 CNGA4Q8IV77 575 aa5.16□□□□□ -1.58
SCN1A-202ENST00000375405 NECAB1Q8N987 351 aa5.16□□□□□ -1.58
SCN1A-202ENST00000375405 GDAP1Q8TB36 358 aa5.16□□□□□ -1.58
SCN1A-202ENST00000375405 BCAS4Q8TDM0 211 aa5.16□□□□□ -1.58
SCN1A-202ENST00000375405 TTC14Q96N46 770 aa5.16□□□□□ -1.58
SCN1A-202ENST00000375405 ASAP1Q9ULH1 1129 aa5.16□□□□□ -1.58
SCN1A-202ENST00000375405 HEXIM1O94992 359 aaKnown RBP5.16□□□□□ -1.58
SCN1A-202ENST00000375405 HNRNPCP07910 306 aaKnown RBP eCLIP5.16□□□□□ -1.58
SCN1A-202ENST00000375405 RFC4P35249 363 aa5.16□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms