RNA–Protein interactions for RNA: ENST00000372733.3

SDC4-201, Transcript of syndecan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC4, Length 2,613 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC4-201ENST00000372733 UBXN4Q92575 508 aa18.89■□□□□ 0.62
SDC4-201ENST00000372733 CCP110O43303 1012 aa18.89■□□□□ 0.61
SDC4-201ENST00000372733 CBFA2T2O43439 604 aa18.89■□□□□ 0.61
SDC4-201ENST00000372733 METAP2P50579 478 aaKnown RBP eCLIP18.89■□□□□ 0.61
SDC4-201ENST00000372733 GNL2Q13823 731 aaKnown RBP18.89■□□□□ 0.61
SDC4-201ENST00000372733 FAM177A1Q8N128 213 aaPredicted RBP18.89■□□□□ 0.61
SDC4-201ENST00000372733 CARD6Q9BX69 1037 aa18.89■□□□□ 0.61
SDC4-201ENST00000372733 TMX1Q9H3N1 280 aa18.89■□□□□ 0.61
SDC4-201ENST00000372733 SENP2Q9HC62 589 aa18.89■□□□□ 0.61
SDC4-201ENST00000372733 INTS13Q9NVM9 706 aa18.89■□□□□ 0.61
SDC4-201ENST00000372733 FANCLQ9NW38 375 aa18.89■□□□□ 0.61
SDC4-201ENST00000372733 C1orf167Q5SNV9 1468 aa18.89■□□□□ 0.61
SDC4-201ENST00000372733 TADA3O75528 432 aa18.88■□□□□ 0.61
SDC4-201ENST00000372733 TUBB4AP04350 444 aa18.88■□□□□ 0.61
SDC4-201ENST00000372733 TOP1P11387 765 aaKnown RBP18.88■□□□□ 0.61
SDC4-201ENST00000372733 CYB5R4Q7L1T6 521 aa18.88■□□□□ 0.61
SDC4-201ENST00000372733 NOL10Q9BSC4 688 aaKnown RBP18.88■□□□□ 0.61
SDC4-201ENST00000372733 ALS2Q96Q42 1657 aa18.88■□□□□ 0.61
SDC4-201ENST00000372733 PLA2G4AP47712 749 aa18.88■□□□□ 0.61
SDC4-201ENST00000372733 CCDC57Q2TAC2 916 aa18.88■□□□□ 0.61
SDC4-201ENST00000372733 MICU3Q86XE3 530 aa18.88■□□□□ 0.61
SDC4-201ENST00000372733 PARP3Q9Y6F1 533 aa18.88■□□□□ 0.61
SDC4-201ENST00000372733 CDC27P30260 824 aa18.87■□□□□ 0.61
SDC4-201ENST00000372733 PDE4BQ07343 736 aa18.87■□□□□ 0.61
SDC4-201ENST00000372733 RESP18Q5W5W9 173 aa18.87■□□□□ 0.61
SDC4-201ENST00000372733 MAP3K14Q99558 947 aa18.87■□□□□ 0.61
SDC4-201ENST00000372733 ATG3Q9NT62 314 aa18.87■□□□□ 0.61
SDC4-201ENST00000372733 ANGEL1Q9UNK9 670 aaKnown RBP18.87■□□□□ 0.61
SDC4-201ENST00000372733 UBE2Q2LH0YL09 131 aa18.87■□□□□ 0.61
SDC4-201ENST00000372733 FOXN1O15353 648 aa18.87■□□□□ 0.61
SDC4-201ENST00000372733 PPP6R2O75170 966 aa18.87■□□□□ 0.61
SDC4-201ENST00000372733 LONRF3Q496Y0 759 aa18.87■□□□□ 0.61
SDC4-201ENST00000372733 TMEM139Q8IV31 216 aa18.87■□□□□ 0.61
SDC4-201ENST00000372733 FOXP4Q8IVH2 680 aaPredicted RBP18.87■□□□□ 0.61
SDC4-201ENST00000372733 JMYQ8N9B5 988 aa18.87■□□□□ 0.61
SDC4-201ENST00000372733 PKD1L3Q7Z443 1732 aa18.87■□□□□ 0.61
SDC4-201ENST00000372733 VWA3AA6NCI4 1184 aa18.87■□□□□ 0.61
SDC4-201ENST00000372733 SEC31AO94979 1220 aaKnown RBP18.87■□□□□ 0.61
SDC4-201ENST00000372733 ZRANB2O95218 330 aaKnown RBP eCLIP18.87■□□□□ 0.61
SDC4-201ENST00000372733 OLFM4Q6UX06 510 aa18.87■□□□□ 0.61
SDC4-201ENST00000372733 EPC1Q9H2F5 836 aa18.87■□□□□ 0.61
SDC4-201ENST00000372733 SH2B2O14492 632 aaPredicted RBP18.86■□□□□ 0.61
SDC4-201ENST00000372733 BMP6P22004 513 aa18.86■□□□□ 0.61
SDC4-201ENST00000372733 TMCO3Q6UWJ1 677 aa18.86■□□□□ 0.61
SDC4-201ENST00000372733 MYL10Q9BUA6 226 aa18.86■□□□□ 0.61
SDC4-201ENST00000372733 PCDHA5Q9Y5H7 936 aa18.86■□□□□ 0.61
SDC4-201ENST00000372733 WDR19Q8NEZ3 1342 aa18.86■□□□□ 0.61
SDC4-201ENST00000372733 A0A0U1RQG5 324 aaPredicted RBP18.86■□□□□ 0.61
SDC4-201ENST00000372733 CCDC66A2RUB6 948 aa18.86■□□□□ 0.61
SDC4-201ENST00000372733 TRDNQ13061 729 aa18.86■□□□□ 0.61
SDC4-201ENST00000372733 SPECC1Q5M775 1068 aa18.86■□□□□ 0.61
SDC4-201ENST00000372733 APOA5Q6Q788 366 aa18.86■□□□□ 0.61
SDC4-201ENST00000372733 AKAP2Q9Y2D5 859 aa18.86■□□□□ 0.61
SDC4-201ENST00000372733 PPP2R2CQ9Y2T4 447 aa18.86■□□□□ 0.61
SDC4-201ENST00000372733 COL18A1P39060 1754 aa18.85■□□□□ 0.61
SDC4-201ENST00000372733 KRBA2Q6ZNG9 492 aa18.85■□□□□ 0.61
SDC4-201ENST00000372733 CNNM3Q8NE01 707 aa18.85■□□□□ 0.61
SDC4-201ENST00000372733 ARGLU1Q9NWB6 273 aaPredicted RBP18.85■□□□□ 0.61
SDC4-201ENST00000372733 FAM237AA0A1B0GTK4 181 aa18.85■□□□□ 0.61
SDC4-201ENST00000372733 KCNH3Q9ULD8 1083 aa18.85■□□□□ 0.61
SDC4-201ENST00000372733 ZNF330Q9Y3S2 320 aaPredicted RBP18.85■□□□□ 0.61
SDC4-201ENST00000372733 B4E1Z4 1266 aa18.84■□□□□ 0.61
SDC4-201ENST00000372733 RANBP6O60518 1105 aaKnown RBP18.84■□□□□ 0.61
SDC4-201ENST00000372733 TAF7LQ5H9L4 462 aa18.84■□□□□ 0.61
SDC4-201ENST00000372733 WDR24Q96S15 920 aa18.84■□□□□ 0.61
SDC4-201ENST00000372733 ECM29Q5VYK3 1845 aa18.84■□□□□ 0.61
SDC4-201ENST00000372733 MST1RQ04912 1400 aa18.84■□□□□ 0.61
SDC4-201ENST00000372733 ARHGAP6O43182 974 aa18.84■□□□□ 0.61
SDC4-201ENST00000372733 CDKL5O76039 1030 aa18.84■□□□□ 0.61
SDC4-201ENST00000372733 MCAMP43121 646 aa18.84■□□□□ 0.61
SDC4-201ENST00000372733 PDILTQ8N807 584 aa18.84■□□□□ 0.61
SDC4-201ENST00000372733 C19orf44Q9H6X5 657 aa18.84■□□□□ 0.61
SDC4-201ENST00000372733 ZSCAN12O43309 604 aa18.83■□□□□ 0.61
SDC4-201ENST00000372733 APPP05067 770 aa18.83■□□□□ 0.61
SDC4-201ENST00000372733 CCDC102BQ68D86 513 aa18.83■□□□□ 0.61
SDC4-201ENST00000372733 FCHSD1Q86WN1 690 aa18.83■□□□□ 0.61
SDC4-201ENST00000372733 PROSER2Q86WR7 435 aaPredicted RBP18.83■□□□□ 0.61
SDC4-201ENST00000372733 SRRTQ9BXP5 876 aaKnown RBP18.83■□□□□ 0.61
SDC4-201ENST00000372733 RIC1Q4ADV7 1423 aa18.83■□□□□ 0.61
SDC4-201ENST00000372733 EFCAB8A8MWE9 144 aa18.83■□□□□ 0.6
SDC4-201ENST00000372733 CUTAO60888 179 aa18.83■□□□□ 0.6
SDC4-201ENST00000372733 UBN2Q6ZU65 1347 aa18.83■□□□□ 0.6
SDC4-201ENST00000372733 ZBTB22O15209 634 aa18.82■□□□□ 0.6
SDC4-201ENST00000372733 POLR3GO15318 223 aaPredicted RBP18.82■□□□□ 0.6
SDC4-201ENST00000372733 GNG11P61952 73 aa18.82■□□□□ 0.6
SDC4-201ENST00000372733 ZNF827Q17R98 1081 aa18.82■□□□□ 0.6
SDC4-201ENST00000372733 CPLX2Q6PUV4 134 aaKnown RBP18.82■□□□□ 0.6
SDC4-201ENST00000372733 TOGARAM2Q6ZUX3 1019 aa18.82■□□□□ 0.6
SDC4-201ENST00000372733 FAM89AQ96GI7 184 aa18.82■□□□□ 0.6
SDC4-201ENST00000372733 BAG1Q99933 345 aaPredicted RBP18.82■□□□□ 0.6
SDC4-201ENST00000372733 GNL3Q9BVP2 549 aaKnown RBP eCLIP18.82■□□□□ 0.6
SDC4-201ENST00000372733 MYH7P12883 1935 aa18.82■□□□□ 0.6
SDC4-201ENST00000372733 GOLGA8AA7E2F4 631 aa18.82■□□□□ 0.6
SDC4-201ENST00000372733 CYP2C19P33261 490 aa18.82■□□□□ 0.6
SDC4-201ENST00000372733 ADD2P35612 726 aa18.82■□□□□ 0.6
SDC4-201ENST00000372733 FMR1Q06787 632 aaKnown RBP eCLIP18.82■□□□□ 0.6
SDC4-201ENST00000372733 NTRK3Q16288 839 aa18.82■□□□□ 0.6
SDC4-201ENST00000372733 SLC9C2Q5TAH2 1124 aa18.82■□□□□ 0.6
SDC4-201ENST00000372733 NFXL1Q6ZNB6 911 aa18.82■□□□□ 0.6
SDC4-201ENST00000372733 TRMT44Q8IYL2 757 aaKnown RBP18.82■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms