RNA–Protein interactions for RNA: ENST00000372066.7

LDB3-204, Transcript of LIM domain binding 3, humanhuman

TSL 1 (best) BASIC

Gene LDB3, Length 1,598 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3-204ENST00000372066 MBD3O95983 291 aa16.72■□□□□ 0.27
LDB3-204ENST00000372066 EGFRP00533 1210 aa16.72■□□□□ 0.27
LDB3-204ENST00000372066 HUNKP57058 714 aa16.72■□□□□ 0.27
LDB3-204ENST00000372066 IFIT5Q13325 482 aaKnown RBP16.72■□□□□ 0.27
LDB3-204ENST00000372066 CCDC152Q4G0S7 254 aa16.72■□□□□ 0.27
LDB3-204ENST00000372066 BLOC1S2Q6QNY1 142 aa16.72■□□□□ 0.27
LDB3-204ENST00000372066 NOL8Q76FK4 1167 aaKnown RBP16.72■□□□□ 0.27
LDB3-204ENST00000372066 NEUROD6Q96NK8 337 aa16.72■□□□□ 0.27
LDB3-204ENST00000372066 DNAJC2Q99543 621 aaKnown RBP16.72■□□□□ 0.27
LDB3-204ENST00000372066 DUOX1Q9NRD9 1551 aa16.72■□□□□ 0.27
LDB3-204ENST00000372066 UFL1O94874 794 aa16.72■□□□□ 0.27
LDB3-204ENST00000372066 ADCK5Q3MIX3 580 aa16.72■□□□□ 0.27
LDB3-204ENST00000372066 TAF7LQ5H9L4 462 aa16.72■□□□□ 0.27
LDB3-204ENST00000372066 CCDC85AQ96PX6 553 aaPredicted RBP16.72■□□□□ 0.27
LDB3-204ENST00000372066 PODXL2Q9NZ53 605 aa16.72■□□□□ 0.27
LDB3-204ENST00000372066 GGA1Q9UJY5 639 aa16.72■□□□□ 0.27
LDB3-204ENST00000372066 RTL9Q8NET4 1388 aa16.71■□□□□ 0.27
LDB3-204ENST00000372066 CCDC85CA6NKD9 419 aa16.71■□□□□ 0.27
LDB3-204ENST00000372066 PDE8AO60658 829 aa16.71■□□□□ 0.27
LDB3-204ENST00000372066 VIL1P09327 827 aaKnown RBP16.71■□□□□ 0.27
LDB3-204ENST00000372066 LRRC24Q50LG9 513 aa16.71■□□□□ 0.27
LDB3-204ENST00000372066 CCDC158Q5M9N0 1113 aa16.71■□□□□ 0.27
LDB3-204ENST00000372066 ZNF589Q86UQ0 364 aaPredicted RBP16.71■□□□□ 0.27
LDB3-204ENST00000372066 SMC3Q9UQE7 1217 aa16.71■□□□□ 0.27
LDB3-204ENST00000372066 IFIT1P09914 478 aaKnown RBP16.7■□□□□ 0.26
LDB3-204ENST00000372066 NOGQ13253 232 aa16.7■□□□□ 0.26
LDB3-204ENST00000372066 C2orf69Q8N8R5 385 aa16.7■□□□□ 0.26
LDB3-204ENST00000372066 DSCC1Q9BVC3 393 aa16.7■□□□□ 0.26
LDB3-204ENST00000372066 ATP6V1DQ9Y5K8 247 aa16.7■□□□□ 0.26
LDB3-204ENST00000372066 TAF1P21675 1872 aa16.7■□□□□ 0.26
LDB3-204ENST00000372066 ADM5C9JUS6 153 aa16.69■□□□□ 0.26
LDB3-204ENST00000372066 ZFYP08048 801 aaPredicted RBP16.69■□□□□ 0.26
LDB3-204ENST00000372066 RPS6KB1P23443 525 aa16.69■□□□□ 0.26
LDB3-204ENST00000372066 CTSWP56202 376 aa16.69■□□□□ 0.26
LDB3-204ENST00000372066 KIF4BQ2VIQ3 1234 aa16.69■□□□□ 0.26
LDB3-204ENST00000372066 EDC3Q96F86 508 aaKnown RBP16.69■□□□□ 0.26
LDB3-204ENST00000372066 ZNF594Q96JF6 807 aaPredicted RBP16.69■□□□□ 0.26
LDB3-204ENST00000372066 ZIC5Q96T25 663 aa16.69■□□□□ 0.26
LDB3-204ENST00000372066 GRPEL1Q9HAV7 217 aa16.69■□□□□ 0.26
LDB3-204ENST00000372066 GBA2Q9HCG7 927 aaPredicted RBP16.69■□□□□ 0.26
LDB3-204ENST00000372066 TCHHQ07283 1943 aa16.69■□□□□ 0.26
LDB3-204ENST00000372066 AKAP11Q9UKA4 1901 aa16.69■□□□□ 0.26
LDB3-204ENST00000372066 TRPM7Q96QT4 1865 aa16.68■□□□□ 0.26
LDB3-204ENST00000372066 ANKRD18BA2A2Z9 1011 aa16.68■□□□□ 0.26
LDB3-204ENST00000372066 HMGB1P09429 215 aaKnown RBP16.68■□□□□ 0.26
LDB3-204ENST00000372066 ZNF445P59923 1031 aa16.68■□□□□ 0.26
LDB3-204ENST00000372066 ZMYM1Q5SVZ6 1142 aa16.68■□□□□ 0.26
LDB3-204ENST00000372066 ANKRD18AQ8IVF6 992 aa16.68■□□□□ 0.26
LDB3-204ENST00000372066 SULF1Q8IWU6 871 aa16.68■□□□□ 0.26
LDB3-204ENST00000372066 DDX60Q8IY21 1712 aaKnown RBP16.68■□□□□ 0.26
LDB3-204ENST00000372066 TIMM10P62072 90 aa16.68■□□□□ 0.26
LDB3-204ENST00000372066 RGMBQ6NW40 437 aa16.68■□□□□ 0.26
LDB3-204ENST00000372066 TTLL11Q8NHH1 800 aa16.68■□□□□ 0.26
LDB3-204ENST00000372066 PUS3Q9BZE2 481 aaKnown RBP16.68■□□□□ 0.26
LDB3-204ENST00000372066 COL4A1P02462 1669 aa16.67■□□□□ 0.26
LDB3-204ENST00000372066 GOLIM4O00461 696 aa16.67■□□□□ 0.26
LDB3-204ENST00000372066 ZSCAN22P10073 491 aaPredicted RBP16.67■□□□□ 0.26
LDB3-204ENST00000372066 XRCC6P12956 609 aaKnown RBP eCLIP16.67■□□□□ 0.26
LDB3-204ENST00000372066 TTC39AQ5SRH9 613 aa16.67■□□□□ 0.26
LDB3-204ENST00000372066 TMEM87AQ8NBN3 555 aa16.67■□□□□ 0.26
LDB3-204ENST00000372066 ZNF512BQ96KM6 892 aaPredicted RBP16.67■□□□□ 0.26
LDB3-204ENST00000372066 GGA3Q9NZ52 723 aa16.67■□□□□ 0.26
LDB3-204ENST00000372066 RNF113AO15541 343 aaKnown RBP16.66■□□□□ 0.26
LDB3-204ENST00000372066 STX6O43752 255 aa16.66■□□□□ 0.26
LDB3-204ENST00000372066 PRPF40AO75400 957 aaKnown RBP16.66■□□□□ 0.26
LDB3-204ENST00000372066 PDCP20941 246 aa16.66■□□□□ 0.26
LDB3-204ENST00000372066 ATP2B4P23634 1241 aa16.66■□□□□ 0.26
LDB3-204ENST00000372066 ZNF157P51786 506 aaPredicted RBP16.66■□□□□ 0.26
LDB3-204ENST00000372066 GORABQ5T7V8 394 aa16.66■□□□□ 0.26
LDB3-204ENST00000372066 RSBN1LQ6PCB5 846 aaPredicted RBP16.66■□□□□ 0.26
LDB3-204ENST00000372066 AGBL3Q8NEM8 1001 aa16.66■□□□□ 0.26
LDB3-204ENST00000372066 CCDC102AQ96A19 550 aa16.66■□□□□ 0.26
LDB3-204ENST00000372066 BRPF3Q9ULD4 1205 aa16.66■□□□□ 0.26
LDB3-204ENST00000372066 LRRC37AA6NMS7 1700 aa16.66■□□□□ 0.26
LDB3-204ENST00000372066 ASTN2O75129 1339 aaPredicted RBP16.65■□□□□ 0.26
LDB3-204ENST00000372066 XDHP47989 1333 aa16.65■□□□□ 0.26
LDB3-204ENST00000372066 THSD7BQ9C0I4 1608 aa16.65■□□□□ 0.26
LDB3-204ENST00000372066 CPA1P15085 419 aa16.65■□□□□ 0.26
LDB3-204ENST00000372066 ITGA6P23229 1130 aa16.65■□□□□ 0.26
LDB3-204ENST00000372066 SCARF1Q14162 830 aa16.65■□□□□ 0.26
LDB3-204ENST00000372066 ATP2B3Q16720 1220 aa16.65■□□□□ 0.26
LDB3-204ENST00000372066 CSPP1Q1MSJ5 1256 aa16.65■□□□□ 0.26
LDB3-204ENST00000372066 XAGE2Q96GT9 111 aa16.65■□□□□ 0.26
LDB3-204ENST00000372066 NEK1Q96PY6 1258 aa16.65■□□□□ 0.26
LDB3-204ENST00000372066 CDC5LQ99459 802 aaKnown RBP16.65■□□□□ 0.26
LDB3-204ENST00000372066 MCOLN1Q9GZU1 580 aa16.65■□□□□ 0.26
LDB3-204ENST00000372066 RIPOR2Q9Y4F9 1068 aa16.65■□□□□ 0.26
LDB3-204ENST00000372066 DOCK2Q92608 1830 aa16.64■□□□□ 0.26
LDB3-204ENST00000372066 FAM155AB1AL88 458 aaPredicted RBP16.64■□□□□ 0.25
LDB3-204ENST00000372066 NCLP19338 710 aaKnown RBP16.64■□□□□ 0.25
LDB3-204ENST00000372066 SYT1P21579 422 aa16.64■□□□□ 0.25
LDB3-204ENST00000372066 ZNF280AP59817 542 aaPredicted RBP16.64■□□□□ 0.25
LDB3-204ENST00000372066 KIF23Q02241 960 aaPredicted RBP16.64■□□□□ 0.25
LDB3-204ENST00000372066 CCDC83Q8IWF9 413 aa16.64■□□□□ 0.25
LDB3-204ENST00000372066 SYAP1Q96A49 352 aaPredicted RBP16.64■□□□□ 0.25
LDB3-204ENST00000372066 USP17L3A6NCW0 530 aa16.64■□□□□ 0.25
LDB3-204ENST00000372066 USP17L4A6NCW7 530 aa16.64■□□□□ 0.25
LDB3-204ENST00000372066 LARGE1O95461 756 aa16.64■□□□□ 0.25
LDB3-204ENST00000372066 F13A1P00488 732 aa16.64■□□□□ 0.25
LDB3-204ENST00000372066 USP17L8P0C7I0 530 aa16.64■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms