RNA–Protein interactions for RNA: ENST00000370576.8

MCF2-203, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene MCF2, Length 3,688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-203ENST00000370576 PPP1R15BQ5SWA1 713 aa4.77□□□□□ -1.65
MCF2-203ENST00000370576 RIC3Q7Z5B4 369 aa4.77□□□□□ -1.65
MCF2-203ENST00000370576 IL17REQ8NFR9 667 aa4.77□□□□□ -1.65
MCF2-203ENST00000370576 TMEM260Q9NX78 707 aa4.77□□□□□ -1.65
MCF2-203ENST00000370576 USP17L8P0C7I0 530 aa4.77□□□□□ -1.65
MCF2-203ENST00000370576 PSMA3P25788 255 aa4.77□□□□□ -1.65
MCF2-203ENST00000370576 CD151P48509 253 aa4.77□□□□□ -1.65
MCF2-203ENST00000370576 RSBN1LQ6PCB5 846 aaPredicted RBP4.77□□□□□ -1.65
MCF2-203ENST00000370576 RNF135Q8IUD6 432 aa4.77□□□□□ -1.65
MCF2-203ENST00000370576 TMEM87BQ96K49 555 aa4.77□□□□□ -1.65
MCF2-203ENST00000370576 RGS17Q9UGC6 210 aaPredicted RBP4.77□□□□□ -1.65
MCF2-203ENST00000370576 CDV3Q9UKY7 258 aaKnown RBP4.77□□□□□ -1.65
MCF2-203ENST00000370576 ARFGEF1Q9Y6D6 1849 aa4.77□□□□□ -1.65
MCF2-203ENST00000370576 RTL9Q8NET4 1388 aa4.76□□□□□ -1.65
MCF2-203ENST00000370576 ZBTB7BO15156 539 aaPredicted RBP4.76□□□□□ -1.65
MCF2-203ENST00000370576 HIP1RO75146 1068 aa4.76□□□□□ -1.65
MCF2-203ENST00000370576 NR1I2O75469 434 aa4.76□□□□□ -1.65
MCF2-203ENST00000370576 NAT1P18440 290 aa4.76□□□□□ -1.65
MCF2-203ENST00000370576 WDR43Q15061 677 aaKnown RBP eCLIP4.76□□□□□ -1.65
MCF2-203ENST00000370576 LVRNQ6Q4G3 990 aa4.76□□□□□ -1.65
MCF2-203ENST00000370576 IGF2-ASQ6U949 168 aa4.76□□□□□ -1.65
MCF2-203ENST00000370576 SPIRE2Q8WWL2 714 aa4.76□□□□□ -1.65
MCF2-203ENST00000370576 TAGLN3Q9UI15 199 aa4.76□□□□□ -1.65
MCF2-203ENST00000370576 NOL7Q9UMY1 257 aaKnown RBP4.76□□□□□ -1.65
MCF2-203ENST00000370576 TAF1P21675 1872 aa4.76□□□□□ -1.65
MCF2-203ENST00000370576 SPATA31A6Q5VVP1 1343 aa4.76□□□□□ -1.65
MCF2-203ENST00000370576 C19orf81C9J6K1 198 aa4.76□□□□□ -1.65
MCF2-203ENST00000370576 CDC27P30260 824 aa4.76□□□□□ -1.65
MCF2-203ENST00000370576 CLDN10P78369 228 aa4.76□□□□□ -1.65
MCF2-203ENST00000370576 JAMLQ86YT9 394 aa4.76□□□□□ -1.65
MCF2-203ENST00000370576 EFCAB3Q8N7B9 438 aa4.76□□□□□ -1.65
MCF2-203ENST00000370576 RNF34Q969K3 372 aa4.76□□□□□ -1.65
MCF2-203ENST00000370576 OSBPL3Q9H4L5 887 aa4.76□□□□□ -1.65
MCF2-203ENST00000370576 GJA3Q9Y6H8 435 aa4.76□□□□□ -1.65
MCF2-203ENST00000370576 RFX7Q2KHR2 1363 aa4.76□□□□□ -1.65
MCF2-203ENST00000370576 USP17L15C9J2P7 530 aa4.76□□□□□ -1.65
MCF2-203ENST00000370576 USP17L10C9JJH3 530 aa4.76□□□□□ -1.65
MCF2-203ENST00000370576 USP17L13C9JLJ4 530 aa4.76□□□□□ -1.65
MCF2-203ENST00000370576 USP17L12C9JPN9 530 aa4.76□□□□□ -1.65
MCF2-203ENST00000370576 USP17L11C9JVI0 530 aa4.76□□□□□ -1.65
MCF2-203ENST00000370576 USP17L21D6R901 530 aa4.76□□□□□ -1.65
MCF2-203ENST00000370576 USP17L18D6R9N7 530 aa4.76□□□□□ -1.65
MCF2-203ENST00000370576 USP17L22D6RA61 530 aa4.76□□□□□ -1.65
MCF2-203ENST00000370576 USP17L17D6RBQ6 530 aa4.76□□□□□ -1.65
MCF2-203ENST00000370576 USP17L19D6RCP7 530 aa4.76□□□□□ -1.65
MCF2-203ENST00000370576 USP17L20D6RJB6 530 aa4.76□□□□□ -1.65
MCF2-203ENST00000370576 COQ9O75208 318 aa4.76□□□□□ -1.65
MCF2-203ENST00000370576 PRKAR2BP31323 418 aa4.76□□□□□ -1.65
MCF2-203ENST00000370576 SOX11P35716 441 aa4.76□□□□□ -1.65
MCF2-203ENST00000370576 FLT3P36888 993 aa4.76□□□□□ -1.65
MCF2-203ENST00000370576 USP17L24Q0WX57 530 aa4.76□□□□□ -1.65
MCF2-203ENST00000370576 HYIQ5T013 277 aa4.76□□□□□ -1.65
MCF2-203ENST00000370576 POTEEQ6S8J3 1075 aa4.76□□□□□ -1.65
MCF2-203ENST00000370576 RASGRP4Q8TDF6 673 aa4.76□□□□□ -1.65
MCF2-203ENST00000370576 TRIM44Q96DX7 344 aaPredicted RBP4.76□□□□□ -1.65
MCF2-203ENST00000370576 SNED1Q8TER0 1413 aa4.76□□□□□ -1.65
MCF2-203ENST00000370576 K7ELQ4 463 aaPredicted RBP4.75□□□□□ -1.65
MCF2-203ENST00000370576 CASP7P55210 303 aa4.75□□□□□ -1.65
MCF2-203ENST00000370576 EIF4A1P60842 406 aaKnown RBP4.75□□□□□ -1.65
MCF2-203ENST00000370576 MVPQ14764 893 aaKnown RBP4.75□□□□□ -1.65
MCF2-203ENST00000370576 LRRC41Q15345 812 aa4.75□□□□□ -1.65
MCF2-203ENST00000370576 ZKSCAN8Q15776 578 aaPredicted RBP4.75□□□□□ -1.65
MCF2-203ENST00000370576 ARSHQ5FYA8 562 aa4.75□□□□□ -1.65
MCF2-203ENST00000370576 LILRB2Q8N423 598 aa4.75□□□□□ -1.65
MCF2-203ENST00000370576 APPL2Q8NEU8 664 aa4.75□□□□□ -1.65
MCF2-203ENST00000370576 HOXC10Q9NYD6 342 aa4.75□□□□□ -1.65
MCF2-203ENST00000370576 SMC3Q9UQE7 1217 aa4.75□□□□□ -1.65
MCF2-203ENST00000370576 CACNA1SQ13698 1873 aa4.75□□□□□ -1.65
MCF2-203ENST00000370576 MYO5AQ9Y4I1 1855 aaKnown RBP4.75□□□□□ -1.65
MCF2-203ENST00000370576 AOX1Q06278 1338 aa4.75□□□□□ -1.65
MCF2-203ENST00000370576 ERVV-2B6SEH9 535 aa4.75□□□□□ -1.65
MCF2-203ENST00000370576 EAPPQ56P03 285 aaPredicted RBP4.75□□□□□ -1.65
MCF2-203ENST00000370576 NXNQ6DKJ4 435 aa4.75□□□□□ -1.65
MCF2-203ENST00000370576 RELL1Q8IUW5 271 aa4.75□□□□□ -1.65
MCF2-203ENST00000370576 ZNF594Q96JF6 807 aaPredicted RBP4.75□□□□□ -1.65
MCF2-203ENST00000370576 PURBQ96QR8 312 aaKnown RBP4.75□□□□□ -1.65
MCF2-203ENST00000370576 RBCK1Q9BYM8 510 aa4.75□□□□□ -1.65
MCF2-203ENST00000370576 LUZP4Q9P127 313 aa4.75□□□□□ -1.65
MCF2-203ENST00000370576 PHKG2P15735 406 aa4.75□□□□□ -1.65
MCF2-203ENST00000370576 ATF4P18848 351 aaPredicted RBP4.75□□□□□ -1.65
MCF2-203ENST00000370576 RXRGP48443 463 aa4.75□□□□□ -1.65
MCF2-203ENST00000370576 HSPA2P54652 639 aa4.75□□□□□ -1.65
MCF2-203ENST00000370576 CFHR5Q9BXR6 569 aa4.75□□□□□ -1.65
MCF2-203ENST00000370576 SPATA31A5Q5VU36 1347 aa4.74□□□□□ -1.65
MCF2-203ENST00000370576 SPATA31A7Q8IWB4 1347 aa4.74□□□□□ -1.65
MCF2-203ENST00000370576 ZNF609O15014 1411 aa4.74□□□□□ -1.65
MCF2-203ENST00000370576 PPP1R12AO14974 1030 aaPredicted RBP4.74□□□□□ -1.65
MCF2-203ENST00000370576 RNMTO43148 476 aaKnown RBP4.74□□□□□ -1.65
MCF2-203ENST00000370576 BBOX1O75936 387 aa4.74□□□□□ -1.65
MCF2-203ENST00000370576 RLBP1P12271 317 aa4.74□□□□□ -1.65
MCF2-203ENST00000370576 TKFCQ3LXA3 575 aa4.74□□□□□ -1.65
MCF2-203ENST00000370576 DALRD3Q5D0E6 543 aaKnown RBP4.74□□□□□ -1.65
MCF2-203ENST00000370576 CENPQQ7L2Z9 268 aaPredicted RBP4.74□□□□□ -1.65
MCF2-203ENST00000370576 IPPQ9Y573 584 aa4.74□□□□□ -1.65
MCF2-203ENST00000370576 CCDC88AQ3V6T2 1871 aa4.74□□□□□ -1.65
MCF2-203ENST00000370576 POTEFA5A3E0 1075 aa4.74□□□□□ -1.65
MCF2-203ENST00000370576 RRM1P23921 792 aa4.74□□□□□ -1.65
MCF2-203ENST00000370576 Q3C1V9 767 aa4.74□□□□□ -1.65
MCF2-203ENST00000370576 RANBP17Q9H2T7 1088 aaKnown RBP4.74□□□□□ -1.65
MCF2-203ENST00000370576 SPATA31A1Q5TZJ5 1347 aa4.74□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms