RNA–Protein interactions for RNA: ENST00000360019.7

CLN3-206, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,840 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-206ENST00000360019 VPS33BQ9H267 617 aa22.15■■□□□ 1.14
CLN3-206ENST00000360019 CYP46A1Q9Y6A2 500 aa22.15■■□□□ 1.14
CLN3-206ENST00000360019 USP17L3A6NCW0 530 aa22.14■■□□□ 1.13
CLN3-206ENST00000360019 USP17L4A6NCW7 530 aa22.14■■□□□ 1.13
CLN3-206ENST00000360019 E7EWF7 191 aa22.14■■□□□ 1.13
CLN3-206ENST00000360019 NFKBIEO00221 500 aa22.14■■□□□ 1.13
CLN3-206ENST00000360019 ZNF213O14771 459 aa22.14■■□□□ 1.13
CLN3-206ENST00000360019 LDHCP07864 332 aa22.14■■□□□ 1.13
CLN3-206ENST00000360019 USP17L1Q7RTZ2 530 aa22.14■■□□□ 1.13
CLN3-206ENST00000360019 FAM163AQ96GL9 167 aaPredicted RBP22.14■■□□□ 1.13
CLN3-206ENST00000360019 NEK1Q96PY6 1258 aa22.14■■□□□ 1.13
CLN3-206ENST00000360019 NBPF3Q9H094 633 aa22.14■■□□□ 1.13
CLN3-206ENST00000360019 TAOK3Q9H2K8 898 aa22.14■■□□□ 1.13
CLN3-206ENST00000360019 GAKO14976 1311 aa22.14■■□□□ 1.13
CLN3-206ENST00000360019 LAMA4Q16363 1823 aa22.13■■□□□ 1.13
CLN3-206ENST00000360019 F8W031 263 aaPredicted RBP22.13■■□□□ 1.13
CLN3-206ENST00000360019 IARSP41252 1262 aaKnown RBP22.13■■□□□ 1.13
CLN3-206ENST00000360019 PPP4CP60510 307 aa22.13■■□□□ 1.13
CLN3-206ENST00000360019 FKBP1AP62942 108 aaKnown RBP22.13■■□□□ 1.13
CLN3-206ENST00000360019 NACAP1Q9BZK3 213 aa22.13■■□□□ 1.13
CLN3-206ENST00000360019 FHDC1Q9C0D6 1143 aaPredicted RBP22.13■■□□□ 1.13
CLN3-206ENST00000360019 TDO2P48775 406 aa22.13■■□□□ 1.13
CLN3-206ENST00000360019 BLOC1S2Q6QNY1 142 aa22.13■■□□□ 1.13
CLN3-206ENST00000360019 IL27Q8NEV9 243 aa22.13■■□□□ 1.13
CLN3-206ENST00000360019 TTF2Q9UNY4 1162 aaKnown RBP22.13■■□□□ 1.13
CLN3-206ENST00000360019 GPR75-ASB3A0A0A6YYF3 556 aa22.12■■□□□ 1.13
CLN3-206ENST00000360019 RPS6KB1P23443 525 aa22.12■■□□□ 1.13
CLN3-206ENST00000360019 BTDP43251 543 aa22.12■■□□□ 1.13
CLN3-206ENST00000360019 CRNKL1Q9BZJ0 848 aaKnown RBP22.12■■□□□ 1.13
CLN3-206ENST00000360019 BAG3O95817 575 aa22.11■■□□□ 1.13
CLN3-206ENST00000360019 AK2P54819 239 aa22.11■■□□□ 1.13
CLN3-206ENST00000360019 TBC1D10CQ8IV04 446 aa22.11■■□□□ 1.13
CLN3-206ENST00000360019 SLF2Q8IX21 1173 aa22.11■■□□□ 1.13
CLN3-206ENST00000360019 SH3RF3Q8TEJ3 882 aaPredicted RBP22.11■■□□□ 1.13
CLN3-206ENST00000360019 PDRG1Q9NUG6 133 aa22.11■■□□□ 1.13
CLN3-206ENST00000360019 ARFGEF1Q9Y6D6 1849 aa22.11■■□□□ 1.13
CLN3-206ENST00000360019 TCEANC2Q96MN5 208 aa22.1■■□□□ 1.13
CLN3-206ENST00000360019 DAGLAQ9Y4D2 1042 aa22.1■■□□□ 1.13
CLN3-206ENST00000360019 PSME4Q14997 1843 aa22.1■■□□□ 1.13
CLN3-206ENST00000360019 MCM2P49736 904 aa22.1■■□□□ 1.13
CLN3-206ENST00000360019 NOL10Q9BSC4 688 aaKnown RBP22.1■■□□□ 1.13
CLN3-206ENST00000360019 DCP1AQ9NPI6 582 aaPredicted RBP22.1■■□□□ 1.13
CLN3-206ENST00000360019 GIMAP6Q6P9H5 292 aa22.09■■□□□ 1.13
CLN3-206ENST00000360019 NOL8Q76FK4 1167 aaKnown RBP22.09■■□□□ 1.13
CLN3-206ENST00000360019 KIAA0825Q8IV33 1275 aa22.09■■□□□ 1.13
CLN3-206ENST00000360019 BAZ2AQ9UIF9 1905 aaKnown RBP22.09■■□□□ 1.13
CLN3-206ENST00000360019 TIAM2Q8IVF5 1701 aa22.09■■□□□ 1.13
CLN3-206ENST00000360019 SCNN1DP51172 638 aa22.08■■□□□ 1.13
CLN3-206ENST00000360019 SPRYD3Q8NCJ5 442 aa22.08■■□□□ 1.13
CLN3-206ENST00000360019 ATP8A2Q9NTI2 1148 aa22.08■■□□□ 1.13
CLN3-206ENST00000360019 LTBP3Q9NS15 1303 aa22.08■■□□□ 1.12
CLN3-206ENST00000360019 HMGB1P09429 215 aaKnown RBP22.08■■□□□ 1.12
CLN3-206ENST00000360019 RHBDL3P58872 404 aa22.08■■□□□ 1.12
CLN3-206ENST00000360019 RASSF7Q02833 373 aa22.08■■□□□ 1.12
CLN3-206ENST00000360019 CTDSPL2Q05D32 466 aa22.08■■□□□ 1.12
CLN3-206ENST00000360019 NIM1KQ8IY84 436 aa22.08■■□□□ 1.12
CLN3-206ENST00000360019 MKRN1Q9UHC7 482 aaKnown RBP22.08■■□□□ 1.12
CLN3-206ENST00000360019 ZNRF3Q9ULT6 936 aa22.08■■□□□ 1.12
CLN3-206ENST00000360019 TACC3Q9Y6A5 838 aa22.08■■□□□ 1.12
CLN3-206ENST00000360019 ADAMTSL1Q8N6G6 1762 aa22.08■■□□□ 1.12
CLN3-206ENST00000360019 RAD17O75943 681 aa22.07■■□□□ 1.12
CLN3-206ENST00000360019 CERS3Q8IU89 383 aa22.07■■□□□ 1.12
CLN3-206ENST00000360019 TMX3Q96JJ7 454 aa22.07■■□□□ 1.12
CLN3-206ENST00000360019 SMIM22K7EJ46 135 aa22.06■■□□□ 1.12
CLN3-206ENST00000360019 EXOSC10Q01780 885 aaKnown RBP22.06■■□□□ 1.12
CLN3-206ENST00000360019 PPARAQ07869 468 aa22.06■■□□□ 1.12
CLN3-206ENST00000360019 CTR9Q6PD62 1173 aa22.06■■□□□ 1.12
CLN3-206ENST00000360019 HHIPL2Q6UWX4 724 aa22.06■■□□□ 1.12
CLN3-206ENST00000360019 DHX32Q7L7V1 743 aaKnown RBP22.06■■□□□ 1.12
CLN3-206ENST00000360019 TEKT1Q969V4 418 aa22.06■■□□□ 1.12
CLN3-206ENST00000360019 LARP6Q9BRS8 491 aaKnown RBP22.06■■□□□ 1.12
CLN3-206ENST00000360019 ALDH8A1Q9H2A2 487 aaPredicted RBP22.06■■□□□ 1.12
CLN3-206ENST00000360019 PSMD14O00487 310 aa22.06■■□□□ 1.12
CLN3-206ENST00000360019 PRELPP51888 382 aa22.06■■□□□ 1.12
CLN3-206ENST00000360019 MB21D2Q8IYB1 491 aaPredicted RBP22.06■■□□□ 1.12
CLN3-206ENST00000360019 NKX2-3Q8TAU0 364 aa22.06■■□□□ 1.12
CLN3-206ENST00000360019 ANAPC4Q9UJX5 808 aa22.06■■□□□ 1.12
CLN3-206ENST00000360019 NEDD4P46934 1319 aa22.05■■□□□ 1.12
CLN3-206ENST00000360019 CYP2D7A0A087X1C5 515 aa22.05■■□□□ 1.12
CLN3-206ENST00000360019 MINDY4BA8MYZ0 360 aa22.05■■□□□ 1.12
CLN3-206ENST00000360019 USP17L12C9JPN9 530 aa22.05■■□□□ 1.12
CLN3-206ENST00000360019 USP17L21D6R901 530 aa22.05■■□□□ 1.12
CLN3-206ENST00000360019 VIL1P09327 827 aaKnown RBP22.05■■□□□ 1.12
CLN3-206ENST00000360019 USP5P45974 858 aa22.05■■□□□ 1.12
CLN3-206ENST00000360019 CRKP46108 304 aa22.05■■□□□ 1.12
CLN3-206ENST00000360019 TOB2Q14106 344 aaPredicted RBP22.05■■□□□ 1.12
CLN3-206ENST00000360019 RSBN1LQ6PCB5 846 aaPredicted RBP22.05■■□□□ 1.12
CLN3-206ENST00000360019 NCOA7Q8NI08 942 aa22.05■■□□□ 1.12
CLN3-206ENST00000360019 SYT17Q9BSW7 474 aa22.05■■□□□ 1.12
CLN3-206ENST00000360019 MRIQ9BWK5 157 aa22.05■■□□□ 1.12
CLN3-206ENST00000360019 INCENPQ9NQS7 918 aa22.05■■□□□ 1.12
CLN3-206ENST00000360019 CDK5RAP2Q96SN8 1893 aa22.04■■□□□ 1.12
CLN3-206ENST00000360019 PLCG2P16885 1265 aa22.04■■□□□ 1.12
CLN3-206ENST00000360019 TEX11Q8IYF3 940 aa22.04■■□□□ 1.12
CLN3-206ENST00000360019 TGFBRAP1Q8WUH2 860 aa22.04■■□□□ 1.12
CLN3-206ENST00000360019 STAG1Q8WVM7 1258 aa22.04■■□□□ 1.12
CLN3-206ENST00000360019 LRRC2Q9BYS8 371 aa22.04■■□□□ 1.12
CLN3-206ENST00000360019 HDLBPQ00341 1268 aaKnown RBP22.03■■□□□ 1.12
CLN3-206ENST00000360019 EVX2Q03828 476 aa22.03■■□□□ 1.12
CLN3-206ENST00000360019 AKNAD1Q5T1N1 836 aa22.03■■□□□ 1.12
Retrieved 100 of 20,778 RNA–protein pairs in 69.5 ms