RNA–Protein interactions for RNA: ENST00000357409.9

VPS13A-202, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 9,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-202ENST00000357409 ZNF569Q5MCW4 686 aa8.31□□□□□ -1.08
VPS13A-202ENST00000357409 FMNL3Q8IVF7 1028 aa8.31□□□□□ -1.08
VPS13A-202ENST00000357409 BAG6P46379 1132 aa8.3□□□□□ -1.08
VPS13A-202ENST00000357409 KAZNQ674X7 775 aa8.3□□□□□ -1.08
VPS13A-202ENST00000357409 C2CD5Q86YS7 1000 aa8.3□□□□□ -1.08
VPS13A-202ENST00000357409 ATRIPQ8WXE1 791 aa8.3□□□□□ -1.08
VPS13A-202ENST00000357409 MPHOSPH6Q99547 160 aaKnown RBP8.3□□□□□ -1.08
VPS13A-202ENST00000357409 IMPG2Q9BZV3 1241 aa8.3□□□□□ -1.08
VPS13A-202ENST00000357409 FBF1Q8TES7 1133 aa8.3□□□□□ -1.08
VPS13A-202ENST00000357409 SNAPC4Q5SXM2 1469 aa8.3□□□□□ -1.08
VPS13A-202ENST00000357409 RNMTO43148 476 aaKnown RBP8.3□□□□□ -1.08
VPS13A-202ENST00000357409 CD19P15391 556 aa8.3□□□□□ -1.08
VPS13A-202ENST00000357409 KRT2P35908 639 aa8.3□□□□□ -1.08
VPS13A-202ENST00000357409 TTLL7Q6ZT98 887 aa8.3□□□□□ -1.08
VPS13A-202ENST00000357409 XAGE2Q96GT9 111 aa8.3□□□□□ -1.08
VPS13A-202ENST00000357409 CDCA7Q9BWT1 371 aaPredicted RBP8.3□□□□□ -1.08
VPS13A-202ENST00000357409 DNAI2Q9GZS0 605 aa8.3□□□□□ -1.08
VPS13A-202ENST00000357409 PRAMEF22A3QJZ6 481 aa8.3□□□□□ -1.08
VPS13A-202ENST00000357409 TRAF5O00463 557 aa8.3□□□□□ -1.08
VPS13A-202ENST00000357409 IRX3P78415 501 aaPredicted RBP8.3□□□□□ -1.08
VPS13A-202ENST00000357409 TFAP4Q01664 338 aa8.3□□□□□ -1.08
VPS13A-202ENST00000357409 SNW1Q13573 536 aaKnown RBP8.3□□□□□ -1.08
VPS13A-202ENST00000357409 GLG1Q92896 1179 aa8.3□□□□□ -1.08
VPS13A-202ENST00000357409 SLFNL1Q499Z3 407 aa8.3□□□□□ -1.08
VPS13A-202ENST00000357409 CASC4Q6P4E1 433 aa8.3□□□□□ -1.08
VPS13A-202ENST00000357409 VPS54Q9P1Q0 977 aa8.3□□□□□ -1.08
VPS13A-202ENST00000357409 C9orf84Q5VXU9 1444 aa8.3□□□□□ -1.08
VPS13A-202ENST00000357409 GCOM1H8Y6P7 765 aaPredicted RBP8.3□□□□□ -1.08
VPS13A-202ENST00000357409 HMGB1P09429 215 aaKnown RBP8.3□□□□□ -1.08
VPS13A-202ENST00000357409 MYZAPP0CAP1 466 aa8.3□□□□□ -1.08
VPS13A-202ENST00000357409 ZNF654Q8IZM8 581 aa8.3□□□□□ -1.08
VPS13A-202ENST00000357409 MYCT1Q8N699 235 aa8.3□□□□□ -1.08
VPS13A-202ENST00000357409 GIMAP7Q8NHV1 300 aa8.3□□□□□ -1.08
VPS13A-202ENST00000357409 ODF2LQ9ULJ1 636 aa8.3□□□□□ -1.08
VPS13A-202ENST00000357409 SLC16A2P36021 539 aa8.3□□□□□ -1.08
VPS13A-202ENST00000357409 TCIRG1Q13488 830 aa8.3□□□□□ -1.08
VPS13A-202ENST00000357409 KSR2Q6VAB6 950 aa8.3□□□□□ -1.08
VPS13A-202ENST00000357409 GDAP1L1Q96MZ0 367 aa8.3□□□□□ -1.08
VPS13A-202ENST00000357409 TXNDC16Q9P2K2 825 aa8.3□□□□□ -1.08
VPS13A-202ENST00000357409 VPS41P49754 854 aa8.3□□□□□ -1.08
VPS13A-202ENST00000357409 RLBP1P12271 317 aa8.29□□□□□ -1.08
VPS13A-202ENST00000357409 DPY19L2Q6NUT2 758 aa8.29□□□□□ -1.08
VPS13A-202ENST00000357409 CCP110O43303 1012 aa8.29□□□□□ -1.08
VPS13A-202ENST00000357409 CDK13Q14004 1512 aaKnown RBP8.29□□□□□ -1.08
VPS13A-202ENST00000357409 GOLGA6L7A0A1B0GV03 622 aa8.29□□□□□ -1.08
VPS13A-202ENST00000357409 PARP1P09874 1014 aaKnown RBP8.29□□□□□ -1.08
VPS13A-202ENST00000357409 CCDC6Q16204 474 aa8.29□□□□□ -1.08
VPS13A-202ENST00000357409 KMT5BQ4FZB7 885 aa8.29□□□□□ -1.08
VPS13A-202ENST00000357409 SYT10Q6XYQ8 523 aa8.29□□□□□ -1.08
VPS13A-202ENST00000357409 NLRC4Q9NPP4 1024 aa8.29□□□□□ -1.08
VPS13A-202ENST00000357409 GCNT3O95395 438 aa8.29□□□□□ -1.08
VPS13A-202ENST00000357409 HOXC9P31274 260 aa8.29□□□□□ -1.08
VPS13A-202ENST00000357409 BCAMP50895 628 aa8.29□□□□□ -1.08
VPS13A-202ENST00000357409 SMAD1Q15797 465 aaKnown RBP8.29□□□□□ -1.08
VPS13A-202ENST00000357409 CTNND2Q9UQB3 1225 aa8.29□□□□□ -1.08
VPS13A-202ENST00000357409 CACNB3P54284 484 aa8.29□□□□□ -1.08
VPS13A-202ENST00000357409 PDE1AP54750 535 aa8.29□□□□□ -1.08
VPS13A-202ENST00000357409 BMS1Q14692 1282 aaKnown RBP8.29□□□□□ -1.08
VPS13A-202ENST00000357409 PPP4R3BQ5MIZ7 849 aa8.29□□□□□ -1.08
VPS13A-202ENST00000357409 CREB3L3Q68CJ9 461 aa8.29□□□□□ -1.08
VPS13A-202ENST00000357409 TECP42680 631 aa8.29□□□□□ -1.08
VPS13A-202ENST00000357409 TRPC6Q9Y210 931 aa8.29□□□□□ -1.08
VPS13A-202ENST00000357409 BUB1BO60566 1050 aaPredicted RBP8.29□□□□□ -1.08
VPS13A-202ENST00000357409 TPD52P55327 224 aaPredicted RBP8.29□□□□□ -1.08
VPS13A-202ENST00000357409 FAM102BQ5T8I3 360 aa8.29□□□□□ -1.08
VPS13A-202ENST00000357409 STXBP4Q6ZWJ1 553 aa8.29□□□□□ -1.08
VPS13A-202ENST00000357409 KIF18AQ8NI77 898 aa8.29□□□□□ -1.08
VPS13A-202ENST00000357409 TTC36A6NLP5 189 aa8.29□□□□□ -1.08
VPS13A-202ENST00000357409 TRMT44Q8IYL2 757 aaKnown RBP8.28□□□□□ -1.08
VPS13A-202ENST00000357409 TIGD1Q96MW7 591 aa8.28□□□□□ -1.08
VPS13A-202ENST00000357409 IFNKQ9P0W0 207 aa8.28□□□□□ -1.08
VPS13A-202ENST00000357409 ESPNB1AK53 854 aa8.28□□□□□ -1.08
VPS13A-202ENST00000357409 E7EVH7 732 aa8.28□□□□□ -1.08
VPS13A-202ENST00000357409 C21orf2O43822 256 aa8.28□□□□□ -1.08
VPS13A-202ENST00000357409 PPP1R7Q15435 360 aa8.28□□□□□ -1.08
VPS13A-202ENST00000357409 POLR2DO15514 142 aaKnown RBP8.28□□□□□ -1.08
VPS13A-202ENST00000357409 KCTD1Q719H9 257 aa8.28□□□□□ -1.08
VPS13A-202ENST00000357409 MRPL50Q8N5N7 158 aaKnown RBP8.28□□□□□ -1.08
VPS13A-202ENST00000357409 UBLCP1Q8WVY7 318 aaPredicted RBP8.28□□□□□ -1.08
VPS13A-202ENST00000357409 ALKBH8Q96BT7 664 aaKnown RBP8.28□□□□□ -1.08
VPS13A-202ENST00000357409 KRT23Q9C075 422 aa8.28□□□□□ -1.08
VPS13A-202ENST00000357409 CYP4A11Q02928 519 aa8.28□□□□□ -1.08
VPS13A-202ENST00000357409 ADCY1Q08828 1119 aa8.28□□□□□ -1.08
VPS13A-202ENST00000357409 SUCLG2Q96I99 432 aa8.28□□□□□ -1.08
VPS13A-202ENST00000357409 ESYT1Q9BSJ8 1104 aa8.28□□□□□ -1.08
VPS13A-202ENST00000357409 SHTN1A0MZ66 631 aa8.28□□□□□ -1.08
VPS13A-202ENST00000357409 TRPC3Q13507 836 aa8.28□□□□□ -1.08
VPS13A-202ENST00000357409 CCDC157Q569K6 752 aa8.28□□□□□ -1.08
VPS13A-202ENST00000357409 IRAK4Q9NWZ3 460 aa8.28□□□□□ -1.08
VPS13A-202ENST00000357409 SYNJ2O15056 1496 aa8.28□□□□□ -1.08
VPS13A-202ENST00000357409 POGZQ7Z3K3 1410 aa8.28□□□□□ -1.08
VPS13A-202ENST00000357409 PRPF6O94906 941 aaKnown RBP8.28□□□□□ -1.08
VPS13A-202ENST00000357409 PPFIA1Q13136 1202 aa8.28□□□□□ -1.08
VPS13A-202ENST00000357409 SMC1BQ8NDV3 1235 aa8.28□□□□□ -1.08
VPS13A-202ENST00000357409 WDR7Q9Y4E6 1490 aa8.28□□□□□ -1.08
VPS13A-202ENST00000357409 ZBTB16Q05516 673 aa8.28□□□□□ -1.08
VPS13A-202ENST00000357409 RYBPQ8N488 228 aaPredicted RBP8.28□□□□□ -1.08
VPS13A-202ENST00000357409 SEPT10Q9P0V9 454 aa8.28□□□□□ -1.08
VPS13A-202ENST00000357409 ASAP1Q9ULH1 1129 aa8.28□□□□□ -1.08
VPS13A-202ENST00000357409 FAM196BA6NMK8 535 aa8.28□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms