RNA–Protein interactions for RNA: ENST00000356786.9

CCDC88B-202, Transcript of coiled-coil domain containing 88B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC88B, Length 4,915 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-202ENST00000356786 TMOD2Q9NZR1 351 aa21.97■■□□□ 1.11
CCDC88B-202ENST00000356786 POLR2DO15514 142 aaKnown RBP21.97■■□□□ 1.11
CCDC88B-202ENST00000356786 BAG3O95817 575 aa21.97■■□□□ 1.11
CCDC88B-202ENST00000356786 LDHCP07864 332 aa21.97■■□□□ 1.11
CCDC88B-202ENST00000356786 ARHGAP25P42331 645 aa21.97■■□□□ 1.11
CCDC88B-202ENST00000356786 LONRF3Q496Y0 759 aa21.97■■□□□ 1.11
CCDC88B-202ENST00000356786 GDAP1L1Q96MZ0 367 aa21.97■■□□□ 1.11
CCDC88B-202ENST00000356786 CTNND2Q9UQB3 1225 aa21.97■■□□□ 1.11
CCDC88B-202ENST00000356786 CCDC174Q6PII3 467 aa21.96■■□□□ 1.11
CCDC88B-202ENST00000356786 DTHD1Q6ZMT9 781 aa21.96■■□□□ 1.11
CCDC88B-202ENST00000356786 RGS22Q8NE09 1264 aa21.96■■□□□ 1.11
CCDC88B-202ENST00000356786 ERMNQ8TAM6 284 aa21.96■■□□□ 1.11
CCDC88B-202ENST00000356786 MAPK8IP1Q9UQF2 711 aa21.96■■□□□ 1.11
CCDC88B-202ENST00000356786 RNASE9P60153 205 aaKnown RBP21.96■■□□□ 1.11
CCDC88B-202ENST00000356786 MAP3K9P80192 1104 aa21.96■■□□□ 1.11
CCDC88B-202ENST00000356786 SND1Q7KZF4 910 aaKnown RBP eCLIP21.96■■□□□ 1.11
CCDC88B-202ENST00000356786 ANTXR1Q9H6X2 564 aa21.96■■□□□ 1.11
CCDC88B-202ENST00000356786 NCKAP5LQ9HCH0 1330 aa21.96■■□□□ 1.11
CCDC88B-202ENST00000356786 PNMA6EA0A0J9YXQ4 647 aa21.96■■□□□ 1.11
CCDC88B-202ENST00000356786 PPFIA1Q13136 1202 aa21.96■■□□□ 1.11
CCDC88B-202ENST00000356786 NAPAP54920 295 aa21.95■■□□□ 1.1
CCDC88B-202ENST00000356786 BRD3Q15059 726 aa21.95■■□□□ 1.1
CCDC88B-202ENST00000356786 JAKMIP2Q96AA8 810 aa21.95■■□□□ 1.1
CCDC88B-202ENST00000356786 AOX1Q06278 1338 aa21.95■■□□□ 1.1
CCDC88B-202ENST00000356786 PPARDQ03181 441 aa21.95■■□□□ 1.1
CCDC88B-202ENST00000356786 ABCC1P33527 1531 aa21.95■■□□□ 1.1
CCDC88B-202ENST00000356786 MAP2K2P36507 400 aa21.95■■□□□ 1.1
CCDC88B-202ENST00000356786 KRT79Q5XKE5 535 aa21.95■■□□□ 1.1
CCDC88B-202ENST00000356786 PNMA8AQ86V59 439 aaPredicted RBP21.95■■□□□ 1.1
CCDC88B-202ENST00000356786 TMEM110-MUSTN1A8MSY1 372 aa21.95■■□□□ 1.1
CCDC88B-202ENST00000356786 ATP2A1O14983 1001 aa21.95■■□□□ 1.1
CCDC88B-202ENST00000356786 NOC4LQ9BVI4 516 aaKnown RBP21.95■■□□□ 1.1
CCDC88B-202ENST00000356786 BICC1Q9H694 974 aaKnown RBP21.95■■□□□ 1.1
CCDC88B-202ENST00000356786 CALCOCO2Q13137 446 aa21.94■■□□□ 1.1
CCDC88B-202ENST00000356786 ZNF174Q15697 407 aa21.94■■□□□ 1.1
CCDC88B-202ENST00000356786 NR1I2O75469 434 aa21.94■■□□□ 1.1
CCDC88B-202ENST00000356786 SLF1Q9BQI6 1058 aa21.94■■□□□ 1.1
CCDC88B-202ENST00000356786 SPATA31E1Q6ZUB1 1445 aa21.94■■□□□ 1.1
CCDC88B-202ENST00000356786 PPP4R3AQ6IN85 833 aa21.94■■□□□ 1.1
CCDC88B-202ENST00000356786 NAA16Q6N069 864 aaPredicted RBP21.94■■□□□ 1.1
CCDC88B-202ENST00000356786 LRRC8AQ8IWT6 810 aa21.94■■□□□ 1.1
CCDC88B-202ENST00000356786 BLMP54132 1417 aaPredicted RBP21.94■■□□□ 1.1
CCDC88B-202ENST00000356786 TSPY3P0CV98 308 aa21.94■■□□□ 1.1
CCDC88B-202ENST00000356786 TSPY8P0CW00 308 aa21.94■■□□□ 1.1
CCDC88B-202ENST00000356786 NEO1Q92859 1461 aa21.93■■□□□ 1.1
CCDC88B-202ENST00000356786 ME3Q16798 604 aa21.93■■□□□ 1.1
CCDC88B-202ENST00000356786 PPFIBP2Q8ND30 876 aa21.93■■□□□ 1.1
CCDC88B-202ENST00000356786 CCDC26Q8TAB7 109 aa21.93■■□□□ 1.1
CCDC88B-202ENST00000356786 IFT74Q96LB3 600 aa21.93■■□□□ 1.1
CCDC88B-202ENST00000356786 PALD1Q9ULE6 856 aa21.93■■□□□ 1.1
CCDC88B-202ENST00000356786 SYNRGQ9UMZ2 1314 aa21.93■■□□□ 1.1
CCDC88B-202ENST00000356786 NPC1L1Q9UHC9 1359 aa21.93■■□□□ 1.1
CCDC88B-202ENST00000356786 CUTAO60888 179 aa21.93■■□□□ 1.1
CCDC88B-202ENST00000356786 IFT20Q8IY31 132 aa21.93■■□□□ 1.1
CCDC88B-202ENST00000356786 NPATQ14207 1427 aa21.93■■□□□ 1.1
CCDC88B-202ENST00000356786 CALM1P0DP23 149 aa21.93■■□□□ 1.1
CCDC88B-202ENST00000356786 CALM2P0DP24 149 aa21.93■■□□□ 1.1
CCDC88B-202ENST00000356786 CALM3P0DP25 149 aa21.93■■□□□ 1.1
CCDC88B-202ENST00000356786 PSMB7Q99436 277 aa21.93■■□□□ 1.1
CCDC88B-202ENST00000356786 INSRP06213 1382 aa21.93■■□□□ 1.1
CCDC88B-202ENST00000356786 TTC37Q6PGP7 1564 aa21.93■■□□□ 1.1
CCDC88B-202ENST00000356786 GSTA5Q7RTV2 222 aa21.92■■□□□ 1.1
CCDC88B-202ENST00000356786 CPSF2Q9P2I0 782 aaKnown RBP21.92■■□□□ 1.1
CCDC88B-202ENST00000356786 ADKP55263 362 aaKnown RBP21.92■■□□□ 1.1
CCDC88B-202ENST00000356786 INTS8Q75QN2 995 aaKnown RBP21.92■■□□□ 1.1
CCDC88B-202ENST00000356786 SLF2Q8IX21 1173 aa21.92■■□□□ 1.1
CCDC88B-202ENST00000356786 TEX13AQ9BXU3 409 aaPredicted RBP21.92■■□□□ 1.1
CCDC88B-202ENST00000356786 HELLSQ9NRZ9 838 aa21.92■■□□□ 1.1
CCDC88B-202ENST00000356786 SAMM50Q9Y512 469 aa21.92■■□□□ 1.1
CCDC88B-202ENST00000356786 PCK1P35558 622 aa21.92■■□□□ 1.1
CCDC88B-202ENST00000356786 TM6SF1Q9BZW5 370 aa21.92■■□□□ 1.1
CCDC88B-202ENST00000356786 MTMR6Q9Y217 621 aa21.92■■□□□ 1.1
CCDC88B-202ENST00000356786 MRVI1Q9Y6F6 885 aa21.92■■□□□ 1.1
CCDC88B-202ENST00000356786 PLCB3Q01970 1234 aa21.92■■□□□ 1.1
CCDC88B-202ENST00000356786 SECISBP2LQ93073 1101 aaKnown RBP21.92■■□□□ 1.1
CCDC88B-202ENST00000356786 TRMT44Q8IYL2 757 aaKnown RBP21.91■■□□□ 1.1
CCDC88B-202ENST00000356786 MRFAP1L1Q96HT8 127 aa21.91■■□□□ 1.1
CCDC88B-202ENST00000356786 EFCAB8A8MWE9 144 aa21.91■■□□□ 1.1
CCDC88B-202ENST00000356786 BUB1BO60566 1050 aaPredicted RBP21.91■■□□□ 1.1
CCDC88B-202ENST00000356786 RAPGEF1Q13905 1077 aa21.91■■□□□ 1.1
CCDC88B-202ENST00000356786 DIS3L2Q8IYB7 885 aaKnown RBP21.91■■□□□ 1.1
CCDC88B-202ENST00000356786 NKIRAS1Q9NYS0 192 aa21.91■■□□□ 1.1
CCDC88B-202ENST00000356786 KIAA1468Q9P260 1216 aa21.91■■□□□ 1.1
CCDC88B-202ENST00000356786 GJC1P36383 396 aa21.91■■□□□ 1.1
CCDC88B-202ENST00000356786 AKAP4Q5JQC9 854 aa21.91■■□□□ 1.1
CCDC88B-202ENST00000356786 ZKSCAN3Q9BRR0 538 aa21.91■■□□□ 1.1
CCDC88B-202ENST00000356786 CFAP65Q6ZU64 1925 aaKnown RBP21.91■■□□□ 1.1
CCDC88B-202ENST00000356786 TTC6Q86TZ1 520 aa21.9■■□□□ 1.1
CCDC88B-202ENST00000356786 KIAA1524Q8TCG1 905 aa21.9■■□□□ 1.1
CCDC88B-202ENST00000356786 ATP6V0A2Q9Y487 856 aa21.9■■□□□ 1.1
CCDC88B-202ENST00000356786 RTL9Q8NET4 1388 aa21.9■■□□□ 1.1
CCDC88B-202ENST00000356786 TIMM10P62072 90 aa21.9■■□□□ 1.1
CCDC88B-202ENST00000356786 RUFY4Q6ZNE9 571 aa21.9■■□□□ 1.1
CCDC88B-202ENST00000356786 LRRC45Q96CN5 670 aa21.9■■□□□ 1.1
CCDC88B-202ENST00000356786 EHMT1Q9H9B1 1298 aa21.9■■□□□ 1.1
CCDC88B-202ENST00000356786 TAB2Q9NYJ8 693 aa21.9■■□□□ 1.1
CCDC88B-202ENST00000356786 PPP1R7Q15435 360 aa21.9■■□□□ 1.1
CCDC88B-202ENST00000356786 SEC62Q99442 399 aaKnown RBP21.9■■□□□ 1.1
CCDC88B-202ENST00000356786 C6orf50Q9HD87 102 aa21.9■■□□□ 1.1
CCDC88B-202ENST00000356786 FERMT2Q96AC1 680 aa21.9■■□□□ 1.1
Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms