RNA–Protein interactions for RNA: ENST00000354674.4

SYNE1-203, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 3,154 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-203ENST00000354674 CHGBP05060 677 aa11.86□□□□□ -0.51
SYNE1-203ENST00000354674 HIBADHP31937 336 aaKnown RBP11.86□□□□□ -0.51
SYNE1-203ENST00000354674 GTF3C6Q969F1 213 aa11.86□□□□□ -0.51
SYNE1-203ENST00000354674 SLX4Q8IY92 1834 aa11.86□□□□□ -0.51
SYNE1-203ENST00000354674 MCMDC2Q4G0Z9 681 aa11.86□□□□□ -0.51
SYNE1-203ENST00000354674 TBC1D16Q8TBP0 767 aa11.86□□□□□ -0.51
SYNE1-203ENST00000354674 SGIP1Q9BQI5 828 aa11.86□□□□□ -0.51
SYNE1-203ENST00000354674 ANO2Q9NQ90 1003 aa11.86□□□□□ -0.51
SYNE1-203ENST00000354674 POLLQ9UGP5 575 aa11.86□□□□□ -0.51
SYNE1-203ENST00000354674 GGA1Q9UJY5 639 aa11.86□□□□□ -0.51
SYNE1-203ENST00000354674 DENND2AQ9ULE3 1009 aa11.86□□□□□ -0.51
SYNE1-203ENST00000354674 MYH13Q9UKX3 1938 aa11.85□□□□□ -0.51
SYNE1-203ENST00000354674 GTF2A1P52655 376 aaPredicted RBP11.85□□□□□ -0.51
SYNE1-203ENST00000354674 NEK11Q8NG66 645 aa11.85□□□□□ -0.51
SYNE1-203ENST00000354674 C7orf43Q8WVR3 580 aa11.85□□□□□ -0.51
SYNE1-203ENST00000354674 CTNNA3Q9UI47 895 aa11.85□□□□□ -0.51
SYNE1-203ENST00000354674 CACNA1SQ13698 1873 aa11.85□□□□□ -0.51
SYNE1-203ENST00000354674 POLR3GO15318 223 aaPredicted RBP11.85□□□□□ -0.51
SYNE1-203ENST00000354674 HSPA4P34932 840 aa11.85□□□□□ -0.51
SYNE1-203ENST00000354674 ADD2P35612 726 aa11.85□□□□□ -0.51
SYNE1-203ENST00000354674 TMED8Q6PL24 325 aaPredicted RBP11.85□□□□□ -0.51
SYNE1-203ENST00000354674 ZNF589Q86UQ0 364 aaPredicted RBP11.85□□□□□ -0.51
SYNE1-203ENST00000354674 KCNB2Q92953 911 aa11.85□□□□□ -0.51
SYNE1-203ENST00000354674 CNKSR1Q969H4 720 aa11.85□□□□□ -0.51
SYNE1-203ENST00000354674 CIZ1Q9ULV3 898 aaPredicted RBP11.85□□□□□ -0.51
SYNE1-203ENST00000354674 CCDC171Q6TFL3 1326 aa11.85□□□□□ -0.51
SYNE1-203ENST00000354674 TCRBV5S4A2TA0A5A2 114 aa11.85□□□□□ -0.51
SYNE1-203ENST00000354674 KCNA3P22001 575 aa11.85□□□□□ -0.51
SYNE1-203ENST00000354674 CHRNA5P30532 468 aa11.85□□□□□ -0.51
SYNE1-203ENST00000354674 PTH1RQ03431 593 aa11.85□□□□□ -0.51
SYNE1-203ENST00000354674 SART3Q15020 963 aaKnown RBP11.85□□□□□ -0.51
SYNE1-203ENST00000354674 R3HDM1Q15032 1099 aaKnown RBP11.85□□□□□ -0.51
SYNE1-203ENST00000354674 UBE3CQ15386 1083 aa11.85□□□□□ -0.51
SYNE1-203ENST00000354674 ZSCAN25Q6NSZ9 544 aa11.85□□□□□ -0.51
SYNE1-203ENST00000354674 TDRD7Q8NHU6 1098 aaKnown RBP11.85□□□□□ -0.51
SYNE1-203ENST00000354674 MAP4K1Q92918 833 aa11.85□□□□□ -0.51
SYNE1-203ENST00000354674 DDX24Q9GZR7 859 aaKnown RBP eCLIP11.85□□□□□ -0.51
SYNE1-203ENST00000354674 UFL1O94874 794 aa11.84□□□□□ -0.51
SYNE1-203ENST00000354674 ANAPC15P60006 121 aa11.84□□□□□ -0.51
SYNE1-203ENST00000354674 RAD51AP2Q09MP3 1159 aa11.84□□□□□ -0.51
SYNE1-203ENST00000354674 TSPY26PQ9H489 355 aa11.84□□□□□ -0.51
SYNE1-203ENST00000354674 ZBTB7AO95365 584 aa11.84□□□□□ -0.51
SYNE1-203ENST00000354674 IL1R1P14778 569 aa11.84□□□□□ -0.51
SYNE1-203ENST00000354674 PRPF40BQ6NWY9 871 aaKnown RBP11.84□□□□□ -0.51
SYNE1-203ENST00000354674 APPBP2Q92624 585 aa11.84□□□□□ -0.51
SYNE1-203ENST00000354674 ZNF622Q969S3 477 aaKnown RBP eCLIP11.84□□□□□ -0.51
SYNE1-203ENST00000354674 SEC62Q99442 399 aaKnown RBP11.84□□□□□ -0.51
SYNE1-203ENST00000354674 CALCOCO1Q9P1Z2 691 aa11.84□□□□□ -0.51
SYNE1-203ENST00000354674 SLFNL1Q499Z3 407 aa11.83□□□□□ -0.51
SYNE1-203ENST00000354674 VPS37DQ86XT2 251 aa11.83□□□□□ -0.51
SYNE1-203ENST00000354674 OSBP2Q969R2 916 aa11.83□□□□□ -0.51
SYNE1-203ENST00000354674 RTFDC1Q9BY42 306 aaPredicted RBP11.83□□□□□ -0.51
SYNE1-203ENST00000354674 MAST3O60307 1309 aa11.83□□□□□ -0.52
SYNE1-203ENST00000354674 SALL1Q9NSC2 1324 aa11.83□□□□□ -0.52
SYNE1-203ENST00000354674 ZNF804AQ7Z570 1209 aa11.83□□□□□ -0.52
SYNE1-203ENST00000354674 MAST2Q6P0Q8 1798 aa11.83□□□□□ -0.52
SYNE1-203ENST00000354674 NECTIN1Q15223 517 aa11.83□□□□□ -0.52
SYNE1-203ENST00000354674 DHX30Q7L2E3 1194 aaKnown RBP eCLIP11.83□□□□□ -0.52
SYNE1-203ENST00000354674 M0R2C6 588 aa11.82□□□□□ -0.52
SYNE1-203ENST00000354674 PDE6AP16499 860 aa11.82□□□□□ -0.52
SYNE1-203ENST00000354674 TGFB2P61812 414 aa11.82□□□□□ -0.52
SYNE1-203ENST00000354674 SLC9C2Q5TAH2 1124 aa11.82□□□□□ -0.52
SYNE1-203ENST00000354674 ANKRD7Q92527 254 aa11.82□□□□□ -0.52
SYNE1-203ENST00000354674 DRC1Q96MC2 740 aa11.82□□□□□ -0.52
SYNE1-203ENST00000354674 WWC3Q9ULE0 1092 aa11.82□□□□□ -0.52
SYNE1-203ENST00000354674 MCCP23508 829 aa11.82□□□□□ -0.52
SYNE1-203ENST00000354674 POLD1P28340 1107 aa11.82□□□□□ -0.52
SYNE1-203ENST00000354674 MAP3K12Q12852 859 aa11.82□□□□□ -0.52
SYNE1-203ENST00000354674 OLFM4Q6UX06 510 aa11.82□□□□□ -0.52
SYNE1-203ENST00000354674 FEZ1Q99689 392 aa11.82□□□□□ -0.52
SYNE1-203ENST00000354674 IQSEC3Q9UPP2 1182 aaPredicted RBP11.82□□□□□ -0.52
SYNE1-203ENST00000354674 BRCA1P38398 1863 aaKnown RBP11.82□□□□□ -0.52
SYNE1-203ENST00000354674 PTGER2P43116 358 aa11.81□□□□□ -0.52
SYNE1-203ENST00000354674 FAM193AP78312 1265 aa11.81□□□□□ -0.52
SYNE1-203ENST00000354674 GABPB1Q06547 395 aaPredicted RBP11.81□□□□□ -0.52
SYNE1-203ENST00000354674 E2F4Q16254 413 aa11.81□□□□□ -0.52
SYNE1-203ENST00000354674 CC2D2BQ6DHV5 1058 aa11.81□□□□□ -0.52
SYNE1-203ENST00000354674 CCDC129Q6ZRS4 1044 aa11.81□□□□□ -0.52
SYNE1-203ENST00000354674 GPR101Q96P66 508 aaPredicted RBP11.81□□□□□ -0.52
SYNE1-203ENST00000354674 DSCC1Q9BVC3 393 aa11.81□□□□□ -0.52
SYNE1-203ENST00000354674 PUS7LQ9H0K6 701 aaKnown RBP11.81□□□□□ -0.52
SYNE1-203ENST00000354674 CD209Q9NNX6 404 aa11.81□□□□□ -0.52
SYNE1-203ENST00000354674 PALD1Q9ULE6 856 aa11.81□□□□□ -0.52
SYNE1-203ENST00000354674 ATF5Q9Y2D1 282 aaPredicted RBP11.81□□□□□ -0.52
SYNE1-203ENST00000354674 GADD45BO75293 160 aaPredicted RBP11.81□□□□□ -0.52
SYNE1-203ENST00000354674 IDH1O75874 414 aaKnown RBP11.81□□□□□ -0.52
SYNE1-203ENST00000354674 WASHC4Q2M389 1173 aa11.81□□□□□ -0.52
SYNE1-203ENST00000354674 DPP8Q6V1X1 898 aaPredicted RBP11.81□□□□□ -0.52
SYNE1-203ENST00000354674 SNX21Q969T3 373 aa11.81□□□□□ -0.52
SYNE1-203ENST00000354674 FAM212AQ96EL1 285 aa11.81□□□□□ -0.52
SYNE1-203ENST00000354674 LCMT1Q9UIC8 334 aa11.81□□□□□ -0.52
SYNE1-203ENST00000354674 DDX41Q9UJV9 622 aaKnown RBP11.81□□□□□ -0.52
SYNE1-203ENST00000354674 ZNF532Q9HCE3 1301 aa11.81□□□□□ -0.52
SYNE1-203ENST00000354674 FOXP2O15409 715 aa11.81□□□□□ -0.52
SYNE1-203ENST00000354674 DPEP1P16444 411 aa11.81□□□□□ -0.52
SYNE1-203ENST00000354674 PSEN1P49768 467 aa11.81□□□□□ -0.52
SYNE1-203ENST00000354674 GRIPAP1Q4V328 841 aa11.81□□□□□ -0.52
SYNE1-203ENST00000354674 ANKRD65E5RJM6 399 aa11.8□□□□□ -0.52
SYNE1-203ENST00000354674 RABEP1Q15276 862 aa11.8□□□□□ -0.52
SYNE1-203ENST00000354674 TSGA10IPQ3SY00 556 aa11.8□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms