RNA–Protein interactions for RNA: ENST00000353578.8

COL6A3-203, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 9,963 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-203ENST00000353578 CLSTN2Q9H4D0 955 aa14.06□□□□□ -0.16
COL6A3-203ENST00000353578 MYO1CO00159 1063 aa14.05□□□□□ -0.16
COL6A3-203ENST00000353578 EIF3DO15371 548 aaKnown RBP eCLIP14.05□□□□□ -0.16
COL6A3-203ENST00000353578 SECISBP2LQ93073 1101 aaKnown RBP14.05□□□□□ -0.16
COL6A3-203ENST00000353578 RNF14Q9UBS8 474 aa14.05□□□□□ -0.16
COL6A3-203ENST00000353578 TYW1Q9NV66 732 aaKnown RBP14.05□□□□□ -0.16
COL6A3-203ENST00000353578 USP5P45974 858 aa14.05□□□□□ -0.16
COL6A3-203ENST00000353578 NBPF14Q5TI25 921 aa14.05□□□□□ -0.16
COL6A3-203ENST00000353578 EFHD1Q9BUP0 239 aa14.05□□□□□ -0.16
COL6A3-203ENST00000353578 SNX16P57768 344 aa14.05□□□□□ -0.16
COL6A3-203ENST00000353578 GRAMD4Q6IC98 578 aa14.05□□□□□ -0.16
COL6A3-203ENST00000353578 MCF2L2Q86YR7 1114 aa14.05□□□□□ -0.16
COL6A3-203ENST00000353578 MLKLQ8NB16 471 aa14.05□□□□□ -0.16
COL6A3-203ENST00000353578 ARHGEF12Q9NZN5 1544 aa14.05□□□□□ -0.16
COL6A3-203ENST00000353578 MAN1A1P33908 653 aa14.05□□□□□ -0.16
COL6A3-203ENST00000353578 LIG3P49916 1009 aa14.05□□□□□ -0.16
COL6A3-203ENST00000353578 PPP4R1Q8TF05 950 aa14.05□□□□□ -0.16
COL6A3-203ENST00000353578 ANKRD27Q96NW4 1050 aa14.05□□□□□ -0.16
COL6A3-203ENST00000353578 PHBP35232 272 aa14.05□□□□□ -0.16
COL6A3-203ENST00000353578 CEP126Q9P2H0 1117 aa14.05□□□□□ -0.16
COL6A3-203ENST00000353578 ARHGEF9O43307 516 aa14.04□□□□□ -0.16
COL6A3-203ENST00000353578 GNGT1P63211 74 aa14.04□□□□□ -0.16
COL6A3-203ENST00000353578 APBB1IPQ7Z5R6 666 aaPredicted RBP14.04□□□□□ -0.16
COL6A3-203ENST00000353578 E9PMD0 336 aa14.04□□□□□ -0.16
COL6A3-203ENST00000353578 TEX9Q8N6V9 391 aa14.04□□□□□ -0.16
COL6A3-203ENST00000353578 OSBPL9Q96SU4 736 aa14.04□□□□□ -0.16
COL6A3-203ENST00000353578 ECHDC1Q9NTX5 307 aa14.04□□□□□ -0.16
COL6A3-203ENST00000353578 COMMD10Q9Y6G5 202 aa14.04□□□□□ -0.16
COL6A3-203ENST00000353578 BIN1O00499 593 aa14.04□□□□□ -0.16
COL6A3-203ENST00000353578 KCNA4P22459 653 aa14.04□□□□□ -0.16
COL6A3-203ENST00000353578 TBCAO75347 108 aaKnown RBP14.04□□□□□ -0.16
COL6A3-203ENST00000353578 ZNF76P36508 570 aa14.04□□□□□ -0.16
COL6A3-203ENST00000353578 PHEXP78562 749 aa14.04□□□□□ -0.16
COL6A3-203ENST00000353578 HHATQ5VTY9 493 aa14.04□□□□□ -0.16
COL6A3-203ENST00000353578 NCOA7Q8NI08 942 aa14.04□□□□□ -0.16
COL6A3-203ENST00000353578 PUF60Q9UHX1 559 aaKnown RBP14.04□□□□□ -0.16
COL6A3-203ENST00000353578 MAP3K7O43318 606 aa14.04□□□□□ -0.16
COL6A3-203ENST00000353578 DNA2P51530 1060 aa14.04□□□□□ -0.16
COL6A3-203ENST00000353578 ARHGAP4P98171 946 aa14.04□□□□□ -0.16
COL6A3-203ENST00000353578 KRT71Q3SY84 523 aa14.04□□□□□ -0.16
COL6A3-203ENST00000353578 STAMBPL1Q96FJ0 436 aa14.04□□□□□ -0.16
COL6A3-203ENST00000353578 NAPBQ9H115 298 aa14.04□□□□□ -0.16
COL6A3-203ENST00000353578 C9orf84Q5VXU9 1444 aa14.03□□□□□ -0.16
COL6A3-203ENST00000353578 GOLGA8AA7E2F4 631 aa14.03□□□□□ -0.16
COL6A3-203ENST00000353578 RRAGBQ5VZM2 374 aa14.03□□□□□ -0.16
COL6A3-203ENST00000353578 IGSF22Q8N9C0 903 aa14.03□□□□□ -0.16
COL6A3-203ENST00000353578 SYTL4Q96C24 671 aaPredicted RBP14.03□□□□□ -0.16
COL6A3-203ENST00000353578 CHCHD3Q9NX63 227 aaKnown RBP14.03□□□□□ -0.16
COL6A3-203ENST00000353578 RPL13P26373 211 aaKnown RBP14.03□□□□□ -0.16
COL6A3-203ENST00000353578 RPRD2Q5VT52 1461 aaKnown RBP14.03□□□□□ -0.16
COL6A3-203ENST00000353578 RASGRF2O14827 1237 aa14.03□□□□□ -0.16
COL6A3-203ENST00000353578 CFAP73A6NFT4 308 aa14.03□□□□□ -0.16
COL6A3-203ENST00000353578 TRIM60Q495X7 471 aa14.03□□□□□ -0.16
COL6A3-203ENST00000353578 RAPGEF4Q8WZA2 1011 aa14.03□□□□□ -0.16
COL6A3-203ENST00000353578 CHMP2AO43633 222 aa14.03□□□□□ -0.16
COL6A3-203ENST00000353578 EIF3BP55884 814 aaKnown RBP14.03□□□□□ -0.16
COL6A3-203ENST00000353578 GGT6Q6P531 493 aa14.03□□□□□ -0.16
COL6A3-203ENST00000353578 NLRP7Q8WX94 980 aa14.03□□□□□ -0.16
COL6A3-203ENST00000353578 ANKRD2Q9GZV1 360 aa14.03□□□□□ -0.16
COL6A3-203ENST00000353578 IQUBQ8NA54 791 aa14.03□□□□□ -0.16
COL6A3-203ENST00000353578 KRT23Q9C075 422 aa14.03□□□□□ -0.16
COL6A3-203ENST00000353578 CFAP65Q6ZU64 1925 aaKnown RBP14.03□□□□□ -0.16
COL6A3-203ENST00000353578 CFAP43Q8NDM7 1665 aa14.03□□□□□ -0.16
COL6A3-203ENST00000353578 LMOD1P29536 600 aaPredicted RBP14.03□□□□□ -0.16
COL6A3-203ENST00000353578 MOV10L1Q9BXT6 1211 aaKnown RBP14.03□□□□□ -0.16
COL6A3-203ENST00000353578 SOS1Q07889 1333 aaPredicted RBP14.03□□□□□ -0.16
COL6A3-203ENST00000353578 CLTAP09496 248 aa14.03□□□□□ -0.16
COL6A3-203ENST00000353578 METAP2P50579 478 aaKnown RBP eCLIP14.03□□□□□ -0.16
COL6A3-203ENST00000353578 ETF1P62495 437 aaKnown RBP14.03□□□□□ -0.16
COL6A3-203ENST00000353578 CAPRIN2Q6IMN6 1127 aaKnown RBP14.03□□□□□ -0.16
COL6A3-203ENST00000353578 BBOF1Q8ND07 529 aa14.03□□□□□ -0.16
COL6A3-203ENST00000353578 SEPT10Q9P0V9 454 aa14.02□□□□□ -0.16
COL6A3-203ENST00000353578 HNRNPCL1O60812 293 aaKnown RBP14.02□□□□□ -0.16
COL6A3-203ENST00000353578 HARSP12081 509 aaKnown RBP14.02□□□□□ -0.16
COL6A3-203ENST00000353578 RASSF10A6NK89 507 aa14.02□□□□□ -0.16
COL6A3-203ENST00000353578 SERPINI2O75830 405 aa14.02□□□□□ -0.16
COL6A3-203ENST00000353578 STX2P32856 288 aa14.02□□□□□ -0.16
COL6A3-203ENST00000353578 EPHB4P54760 987 aa14.02□□□□□ -0.16
COL6A3-203ENST00000353578 KIFAP3Q92845 792 aa14.02□□□□□ -0.16
COL6A3-203ENST00000353578 ZNF692Q9BU19 519 aaPredicted RBP14.02□□□□□ -0.17
COL6A3-203ENST00000353578 RTL9Q8NET4 1388 aa14.02□□□□□ -0.17
COL6A3-203ENST00000353578 HSPA1LP34931 641 aa14.02□□□□□ -0.17
COL6A3-203ENST00000353578 NEK2P51955 445 aa14.02□□□□□ -0.17
COL6A3-203ENST00000353578 ERCC5P28715 1186 aaPredicted RBP14.02□□□□□ -0.17
COL6A3-203ENST00000353578 CTNNA1P35221 906 aaKnown RBP14.02□□□□□ -0.17
COL6A3-203ENST00000353578 PAWRQ96IZ0 340 aaKnown RBP14.02□□□□□ -0.17
COL6A3-203ENST00000353578 RNF216Q9NWF9 866 aaPredicted RBP14.02□□□□□ -0.17
COL6A3-203ENST00000353578 SYNRGQ9UMZ2 1314 aa14.02□□□□□ -0.17
COL6A3-203ENST00000353578 KDM5AP29375 1690 aaKnown RBP14.01□□□□□ -0.17
COL6A3-203ENST00000353578 TRIM27P14373 513 aa14.01□□□□□ -0.17
COL6A3-203ENST00000353578 TCP1P17987 556 aaKnown RBP14.01□□□□□ -0.17
COL6A3-203ENST00000353578 GNAQP50148 359 aa14.01□□□□□ -0.17
COL6A3-203ENST00000353578 BLVRAP53004 296 aa14.01□□□□□ -0.17
COL6A3-203ENST00000353578 FBXO18Q8NFZ0 1043 aa14.01□□□□□ -0.17
COL6A3-203ENST00000353578 TTC36A6NLP5 189 aa14.01□□□□□ -0.17
COL6A3-203ENST00000353578 TEX11Q8IYF3 940 aa14.01□□□□□ -0.17
COL6A3-203ENST00000353578 CUL5Q93034 780 aa14.01□□□□□ -0.17
COL6A3-203ENST00000353578 DDX41Q9UJV9 622 aaKnown RBP14.01□□□□□ -0.17
COL6A3-203ENST00000353578 BIRC2Q13490 618 aa14.01□□□□□ -0.17
COL6A3-203ENST00000353578 GRK7Q8WTQ7 553 aa14.01□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms