RNA–Protein interactions for RNA: ENST00000348544.4

VPS39-202, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS39, Length 2,661 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-202ENST00000348544 VSNL1P62760 191 aa7.79□□□□□ -1.16
VPS39-202ENST00000348544 KIF23Q02241 960 aaPredicted RBP7.79□□□□□ -1.16
VPS39-202ENST00000348544 NOM1Q5C9Z4 860 aaKnown RBP7.79□□□□□ -1.16
VPS39-202ENST00000348544 C8orf76Q96K31 380 aa7.79□□□□□ -1.16
VPS39-202ENST00000348544 HAUS7Q99871 368 aa7.79□□□□□ -1.16
VPS39-202ENST00000348544 SH3TC1Q8TE82 1336 aa7.79□□□□□ -1.16
VPS39-202ENST00000348544 ADAMTS13Q76LX8 1427 aa7.79□□□□□ -1.16
VPS39-202ENST00000348544 DIP2AQ14689 1571 aa7.79□□□□□ -1.16
VPS39-202ENST00000348544 SOWAHDA6NJG2 315 aa7.79□□□□□ -1.16
VPS39-202ENST00000348544 CAPN15O75808 1086 aa7.79□□□□□ -1.16
VPS39-202ENST00000348544 ATP2B1P20020 1258 aa7.79□□□□□ -1.16
VPS39-202ENST00000348544 NLRP6P59044 892 aa7.79□□□□□ -1.16
VPS39-202ENST00000348544 CASP8Q14790 479 aa7.79□□□□□ -1.16
VPS39-202ENST00000348544 TTLL5Q6EMB2 1281 aa7.79□□□□□ -1.16
VPS39-202ENST00000348544 BRAPQ7Z569 592 aa7.79□□□□□ -1.16
VPS39-202ENST00000348544 RAB11FIP4Q86YS3 637 aa7.79□□□□□ -1.16
VPS39-202ENST00000348544 TEX2Q8IWB9 1127 aa7.79□□□□□ -1.16
VPS39-202ENST00000348544 CNNM3Q8NE01 707 aa7.79□□□□□ -1.16
VPS39-202ENST00000348544 GNL3Q9BVP2 549 aaKnown RBP eCLIP7.79□□□□□ -1.16
VPS39-202ENST00000348544 LZTFL1Q9NQ48 299 aa7.79□□□□□ -1.16
VPS39-202ENST00000348544 CDC23Q9UJX2 597 aa7.79□□□□□ -1.16
VPS39-202ENST00000348544 HPS5Q9UPZ3 1129 aa7.79□□□□□ -1.16
VPS39-202ENST00000348544 HDAC5Q9UQL6 1122 aa7.79□□□□□ -1.16
VPS39-202ENST00000348544 LRRIQ3A6PVS8 624 aaPredicted RBP7.78□□□□□ -1.16
VPS39-202ENST00000348544 FOXN1O15353 648 aa7.78□□□□□ -1.16
VPS39-202ENST00000348544 ZNF18P17022 549 aa7.78□□□□□ -1.16
VPS39-202ENST00000348544 RFX5P48382 616 aaPredicted RBP7.78□□□□□ -1.16
VPS39-202ENST00000348544 FMR1Q06787 632 aaKnown RBP eCLIP7.78□□□□□ -1.16
VPS39-202ENST00000348544 SART3Q15020 963 aaKnown RBP7.78□□□□□ -1.16
VPS39-202ENST00000348544 SLC39A14Q15043 492 aa7.78□□□□□ -1.16
VPS39-202ENST00000348544 SPECC1LQ69YQ0 1117 aa7.78□□□□□ -1.16
VPS39-202ENST00000348544 RAD9BQ6WBX8 426 aa7.78□□□□□ -1.16
VPS39-202ENST00000348544 KBTBD3Q8NAB2 608 aa7.78□□□□□ -1.16
VPS39-202ENST00000348544 MED15Q96RN5 788 aa7.78□□□□□ -1.16
VPS39-202ENST00000348544 NCAPGQ9BPX3 1015 aa7.78□□□□□ -1.16
VPS39-202ENST00000348544 TEX13AQ9BXU3 409 aaPredicted RBP7.78□□□□□ -1.16
VPS39-202ENST00000348544 MKRN1Q9UHC7 482 aaKnown RBP7.78□□□□□ -1.16
VPS39-202ENST00000348544 PCDHA5Q9Y5H7 936 aa7.78□□□□□ -1.16
VPS39-202ENST00000348544 DIP2BQ9P265 1576 aa7.78□□□□□ -1.16
VPS39-202ENST00000348544 RGPD8O14715 1765 aaPredicted RBP7.78□□□□□ -1.16
VPS39-202ENST00000348544 TSPOAP1O95153 1857 aa7.78□□□□□ -1.16
VPS39-202ENST00000348544 RHOXF2BP0C7M4 288 aa7.78□□□□□ -1.16
VPS39-202ENST00000348544 PTPN12Q05209 780 aaKnown RBP7.78□□□□□ -1.16
VPS39-202ENST00000348544 AIMP1Q12904 312 aaKnown RBP7.78□□□□□ -1.16
VPS39-202ENST00000348544 LONRF3Q496Y0 759 aa7.78□□□□□ -1.16
VPS39-202ENST00000348544 MPRIPQ6WCQ1 1025 aa7.78□□□□□ -1.16
VPS39-202ENST00000348544 SYNE3Q6ZMZ3 975 aa7.78□□□□□ -1.16
VPS39-202ENST00000348544 ANKARQ7Z5J8 1434 aa7.78□□□□□ -1.16
VPS39-202ENST00000348544 PPM1EQ8WY54 764 aa7.78□□□□□ -1.16
VPS39-202ENST00000348544 CLIC6Q96NY7 704 aa7.78□□□□□ -1.16
VPS39-202ENST00000348544 RHOXF2Q9BQY4 288 aa7.78□□□□□ -1.16
VPS39-202ENST00000348544 DSCC1Q9BVC3 393 aa7.78□□□□□ -1.16
VPS39-202ENST00000348544 HEG1Q9ULI3 1381 aa7.78□□□□□ -1.16
VPS39-202ENST00000348544 ADGRG1Q9Y653 693 aa7.78□□□□□ -1.16
VPS39-202ENST00000348544 MYO1BO43795 1136 aa7.77□□□□□ -1.16
VPS39-202ENST00000348544 EIF3JO75822 258 aaKnown RBP7.77□□□□□ -1.16
VPS39-202ENST00000348544 CPP00450 1065 aa7.77□□□□□ -1.16
VPS39-202ENST00000348544 HSPD1P10809 573 aaKnown RBP7.77□□□□□ -1.16
VPS39-202ENST00000348544 PTPAQ15257 358 aa7.77□□□□□ -1.16
VPS39-202ENST00000348544 NGDNQ8NEJ9 315 aaKnown RBP7.77□□□□□ -1.16
VPS39-202ENST00000348544 FAM71BQ8TC56 605 aa7.77□□□□□ -1.16
VPS39-202ENST00000348544 CCDC102AQ96A19 550 aa7.77□□□□□ -1.16
VPS39-202ENST00000348544 AIFM3Q96NN9 605 aa7.77□□□□□ -1.16
VPS39-202ENST00000348544 FAM204AQ9H8W3 233 aa7.77□□□□□ -1.16
VPS39-202ENST00000348544 COPRSQ9NQ92 184 aa7.77□□□□□ -1.16
VPS39-202ENST00000348544 CCDC9Q9Y3X0 531 aaKnown RBP7.77□□□□□ -1.16
VPS39-202ENST00000348544 FAM237AA0A1B0GTK4 181 aa7.77□□□□□ -1.17
VPS39-202ENST00000348544 POTEB2H3BUK9 544 aa7.77□□□□□ -1.17
VPS39-202ENST00000348544 ERLIN1O75477 346 aa7.77□□□□□ -1.17
VPS39-202ENST00000348544 ABL1P00519 1130 aa7.77□□□□□ -1.17
VPS39-202ENST00000348544 CCDC175P0C221 793 aa7.77□□□□□ -1.17
VPS39-202ENST00000348544 PDIA6Q15084 440 aa7.77□□□□□ -1.17
VPS39-202ENST00000348544 E2F4Q16254 413 aa7.77□□□□□ -1.17
VPS39-202ENST00000348544 RESP18Q5W5W9 173 aa7.77□□□□□ -1.17
VPS39-202ENST00000348544 OLFM4Q6UX06 510 aa7.77□□□□□ -1.17
VPS39-202ENST00000348544 TRMT44Q8IYL2 757 aaKnown RBP7.77□□□□□ -1.17
VPS39-202ENST00000348544 CEP112Q8N8E3 955 aa7.77□□□□□ -1.17
VPS39-202ENST00000348544 NOA1Q8NC60 698 aaKnown RBP7.77□□□□□ -1.17
VPS39-202ENST00000348544 MYCBPQ99417 103 aaPredicted RBP7.77□□□□□ -1.17
VPS39-202ENST00000348544 NFE2L3Q9Y4A8 694 aa7.77□□□□□ -1.17
VPS39-202ENST00000348544 LMO7Q8WWI1 1683 aa7.77□□□□□ -1.17
VPS39-202ENST00000348544 MAST3O60307 1309 aa7.76□□□□□ -1.17
VPS39-202ENST00000348544 NEURL1BA8MQ27 555 aa7.76□□□□□ -1.17
VPS39-202ENST00000348544 MDM2Q00987 491 aaPredicted RBP7.76□□□□□ -1.17
VPS39-202ENST00000348544 ZNF827Q17R98 1081 aa7.76□□□□□ -1.17
VPS39-202ENST00000348544 ZMYM1Q5SVZ6 1142 aa7.76□□□□□ -1.17
VPS39-202ENST00000348544 FBXL16Q8N461 479 aa7.76□□□□□ -1.17
VPS39-202ENST00000348544 PXDNQ92626 1479 aa7.76□□□□□ -1.17
VPS39-202ENST00000348544 NWD2Q9ULI1 1742 aa7.76□□□□□ -1.17
VPS39-202ENST00000348544 KLF18A0A0U1RQI7 1052 aa7.76□□□□□ -1.17
VPS39-202ENST00000348544 GOLGA8BA8MQT2 603 aa7.76□□□□□ -1.17
VPS39-202ENST00000348544 GOLIM4O00461 696 aa7.76□□□□□ -1.17
VPS39-202ENST00000348544 FOXP2O15409 715 aa7.76□□□□□ -1.17
VPS39-202ENST00000348544 PPFIA4O75335 1185 aa7.76□□□□□ -1.17
VPS39-202ENST00000348544 PRPF6O94906 941 aaKnown RBP7.76□□□□□ -1.17
VPS39-202ENST00000348544 SYF2O95926 243 aaKnown RBP7.76□□□□□ -1.17
VPS39-202ENST00000348544 GCKRQ14397 625 aa7.76□□□□□ -1.17
VPS39-202ENST00000348544 ZNF569Q5MCW4 686 aa7.76□□□□□ -1.17
VPS39-202ENST00000348544 ARHGEF25Q86VW2 580 aa7.76□□□□□ -1.17
VPS39-202ENST00000348544 SUGP1Q8IWZ8 645 aaKnown RBP7.76□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms