RNA–Protein interactions for RNA: ENST00000345005.8

CLK3-201, Transcript of CDC like kinase 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLK3, Length 1,846 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-201ENST00000345005 LETM1O95202 739 aaPredicted RBP15.08■□□□□ 0
CLK3-201ENST00000345005 BRD1O95696 1058 aa15.08■□□□□ 0
CLK3-201ENST00000345005 SRGNP10124 158 aa15.08■□□□□ 0
CLK3-201ENST00000345005 PDIA4P13667 645 aaKnown RBP15.08■□□□□ 0
CLK3-201ENST00000345005 ALDH1B1P30837 517 aa15.08■□□□□ 0
CLK3-201ENST00000345005 TRDNQ13061 729 aa15.08■□□□□ 0
CLK3-201ENST00000345005 UVSSAQ2YD98 709 aa15.08■□□□□ 0
CLK3-201ENST00000345005 RALYLQ86SE5 291 aaKnown RBP15.08■□□□□ 0
CLK3-201ENST00000345005 TDRD7Q8NHU6 1098 aaKnown RBP15.08■□□□□ 0
CLK3-201ENST00000345005 WDR66Q8TBY9 1149 aa15.08■□□□□ 0
CLK3-201ENST00000345005 NAPBQ9H115 298 aa15.08■□□□□ 0
CLK3-201ENST00000345005 RBSNQ9H1K0 784 aa15.08■□□□□ 0
CLK3-201ENST00000345005 SLC4A4Q9Y6R1 1079 aa15.08■□□□□ 0
CLK3-201ENST00000345005 WDR19Q8NEZ3 1342 aa15.07■□□□□ 0
CLK3-201ENST00000345005 WDR33Q9C0J8 1336 aaKnown RBP15.07■□□□□ 0
CLK3-201ENST00000345005 GSG1L2A8MUP6 293 aa15.07■□□□□ 0
CLK3-201ENST00000345005 UFL1O94874 794 aa15.07■□□□□ 0
CLK3-201ENST00000345005 CHAF1AQ13111 956 aaPredicted RBP15.07■□□□□ 0
CLK3-201ENST00000345005 LCORLQ8N3X6 602 aa15.07■□□□□ 0
CLK3-201ENST00000345005 NECAB1Q8N987 351 aa15.07■□□□□ 0
CLK3-201ENST00000345005 BRF1Q92994 677 aa15.07■□□□□ 0
CLK3-201ENST00000345005 CHMP4CQ96CF2 233 aa15.07■□□□□ 0
CLK3-201ENST00000345005 LTBP1Q14766 1721 aa15.07■□□□□ 0
CLK3-201ENST00000345005 SALL1Q9NSC2 1324 aa15.07■□□□□ 0
CLK3-201ENST00000345005 COL11A2P13942 1736 aaPredicted RBP15.06■□□□□ 0
CLK3-201ENST00000345005 PPEF1O14829 653 aaPredicted RBP15.06■□□□□ 0
CLK3-201ENST00000345005 MIGA1Q8NAN2 632 aa15.06■□□□□ 0
CLK3-201ENST00000345005 NSUN4Q96CB9 384 aaKnown RBP15.06■□□□□ 0
CLK3-201ENST00000345005 ATP6V0A2Q9Y487 856 aa15.06■□□□□ 0
CLK3-201ENST00000345005 TCHHQ07283 1943 aa15.06■□□□□ 0
CLK3-201ENST00000345005 DYNC1I1O14576 645 aa15.06■□□□□ 0
CLK3-201ENST00000345005 GJB2P29033 226 aa15.06■□□□□ 0
CLK3-201ENST00000345005 MSL1Q68DK7 614 aa15.06■□□□□ 0
CLK3-201ENST00000345005 MB21D2Q8IYB1 491 aaPredicted RBP15.06■□□□□ 0
CLK3-201ENST00000345005 MASTLQ96GX5 879 aa15.06■□□□□ 0
CLK3-201ENST00000345005 LRRC2Q9BYS8 371 aa15.06■□□□□ 0
CLK3-201ENST00000345005 BAZ2AQ9UIF9 1905 aaKnown RBP15.05■□□□□ 0
CLK3-201ENST00000345005 DUOX1Q9NRD9 1551 aa15.05■□□□□ -0
CLK3-201ENST00000345005 TDO2P48775 406 aa15.05■□□□□ -0
CLK3-201ENST00000345005 MECOMQ03112 1051 aa15.05■□□□□ -0
CLK3-201ENST00000345005 ST3GAL1Q11201 340 aa15.05■□□□□ -0
CLK3-201ENST00000345005 ADGRA1Q86SQ6 560 aa15.05■□□□□ -0
CLK3-201ENST00000345005 TBC1D16Q8TBP0 767 aa15.05■□□□□ -0
CLK3-201ENST00000345005 GPT2Q8TD30 523 aa15.05■□□□□ -0
CLK3-201ENST00000345005 GTF3C6Q969F1 213 aa15.05■□□□□ -0
CLK3-201ENST00000345005 ZNF274Q96GC6 653 aaPredicted RBP15.05■□□□□ -0
CLK3-201ENST00000345005 TMX4Q9H1E5 349 aaPredicted RBP15.05■□□□□ -0
CLK3-201ENST00000345005 EPB41L4AQ9HCS5 686 aaPredicted RBP15.05■□□□□ -0
CLK3-201ENST00000345005 MYH2Q9UKX2 1941 aa15.05■□□□□ -0
CLK3-201ENST00000345005 PRC1O43663 620 aa15.04■□□□□ -0
CLK3-201ENST00000345005 PRKAB2O43741 272 aa15.04■□□□□ -0
CLK3-201ENST00000345005 PFKFB2O60825 505 aa15.04■□□□□ -0
CLK3-201ENST00000345005 STK3Q13188 491 aa15.04■□□□□ -0
CLK3-201ENST00000345005 RIOK1Q9BRS2 568 aaKnown RBP15.04■□□□□ -0
CLK3-201ENST00000345005 NBPF3Q9H094 633 aa15.04■□□□□ -0
CLK3-201ENST00000345005 TSPY26PQ9H489 355 aa15.04■□□□□ -0
CLK3-201ENST00000345005 CD209Q9NNX6 404 aa15.04■□□□□ -0
CLK3-201ENST00000345005 TIAM2Q8IVF5 1701 aa15.04■□□□□ -0
CLK3-201ENST00000345005 STX6O43752 255 aa15.03■□□□□ -0
CLK3-201ENST00000345005 IL1R1P14778 569 aa15.03■□□□□ -0
CLK3-201ENST00000345005 PDCP20941 246 aa15.03■□□□□ -0
CLK3-201ENST00000345005 SYT1P21579 422 aa15.03■□□□□ -0
CLK3-201ENST00000345005 EVCP57679 992 aa15.03■□□□□ -0
CLK3-201ENST00000345005 APOBRQ0VD83 1088 aa15.03■□□□□ -0
CLK3-201ENST00000345005 SLC51AQ86UW1 340 aa15.03■□□□□ -0
CLK3-201ENST00000345005 TBC1D10CQ8IV04 446 aa15.03■□□□□ -0
CLK3-201ENST00000345005 ZNF384Q8TF68 577 aa15.03■□□□□ -0
CLK3-201ENST00000345005 CNNM2Q9H8M5 875 aa15.03■□□□□ -0
CLK3-201ENST00000345005 POLLQ9UGP5 575 aa15.03■□□□□ -0
CLK3-201ENST00000345005 PSDA5PKW4 1024 aaPredicted RBP15.03■□□□□ -0
CLK3-201ENST00000345005 C6orf229H3BNL8 230 aa15.03■□□□□ -0
CLK3-201ENST00000345005 LDHBP07195 334 aaKnown RBP15.03■□□□□ -0
CLK3-201ENST00000345005 GSTO1P78417 241 aa15.03■□□□□ -0
CLK3-201ENST00000345005 GIMAP6Q6P9H5 292 aa15.03■□□□□ -0
CLK3-201ENST00000345005 CHST3Q7LGC8 479 aa15.03■□□□□ -0
CLK3-201ENST00000345005 DZIP1Q86YF9 867 aaKnown RBP15.03■□□□□ -0
CLK3-201ENST00000345005 LLPHQ9BRT6 129 aaKnown RBP15.03■□□□□ -0
CLK3-201ENST00000345005 ZSCAN22P10073 491 aaPredicted RBP15.02■□□□□ -0
CLK3-201ENST00000345005 PRDX5P30044 214 aa15.02■□□□□ -0
CLK3-201ENST00000345005 AKNAD1Q5T1N1 836 aa15.02■□□□□ -0
CLK3-201ENST00000345005 MFSD6Q6ZSS7 791 aa15.02■□□□□ -0
CLK3-201ENST00000345005 GPR101Q96P66 508 aaPredicted RBP15.02■□□□□ -0
CLK3-201ENST00000345005 KRT23Q9C075 422 aa15.02■□□□□ -0
CLK3-201ENST00000345005 H0YIN7 160 aa15.01□□□□□ -0.01
CLK3-201ENST00000345005 DYNLL1P63167 89 aaKnown RBP15.01□□□□□ -0.01
CLK3-201ENST00000345005 FOXD4L5Q5VV16 416 aaPredicted RBP15.01□□□□□ -0.01
CLK3-201ENST00000345005 STYK1Q6J9G0 422 aa15.01□□□□□ -0.01
CLK3-201ENST00000345005 SASS6Q6UVJ0 657 aa15.01□□□□□ -0.01
CLK3-201ENST00000345005 C2CD5Q86YS7 1000 aa15.01□□□□□ -0.01
CLK3-201ENST00000345005 MPNDQ8N594 471 aa15.01□□□□□ -0.01
CLK3-201ENST00000345005 FOXD4L4Q8WXT5 416 aaPredicted RBP15.01□□□□□ -0.01
CLK3-201ENST00000345005 CRNKL1Q9BZJ0 848 aaKnown RBP15.01□□□□□ -0.01
CLK3-201ENST00000345005 RNF41Q9H4P4 317 aaPredicted RBP15.01□□□□□ -0.01
CLK3-201ENST00000345005 LDHCP07864 332 aa15.01□□□□□ -0.01
CLK3-201ENST00000345005 PDIA3P30101 505 aaKnown RBP15.01□□□□□ -0.01
CLK3-201ENST00000345005 ANTXR2P58335 489 aa15.01□□□□□ -0.01
CLK3-201ENST00000345005 LARP1BQ659C4 914 aaKnown RBP15.01□□□□□ -0.01
CLK3-201ENST00000345005 STAG1Q8WVM7 1258 aa15.01□□□□□ -0.01
CLK3-201ENST00000345005 ZNF622Q969S3 477 aaKnown RBP eCLIP15.01□□□□□ -0.012e-6■□□□□ 10.5
CLK3-201ENST00000345005 TMEM87BQ96K49 555 aa15.01□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 98.8 ms