RNA–Protein interactions for RNA: ENST00000343916.7

COL9A3-201, Transcript of collagen type IX alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A3, Length 2,485 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-201ENST00000343916 SPATA31A5Q5VU36 1347 aa22.56■■□□□ 1.2
COL9A3-201ENST00000343916 SPATA31A7Q8IWB4 1347 aa22.56■■□□□ 1.2
COL9A3-201ENST00000343916 NOLC1Q14978 699 aaKnown RBP eCLIP22.56■■□□□ 1.2
COL9A3-201ENST00000343916 SMIM5Q71RC9 77 aa22.56■■□□□ 1.2
COL9A3-201ENST00000343916 LCORLQ8N3X6 602 aa22.56■■□□□ 1.2
COL9A3-201ENST00000343916 MIGA1Q8NAN2 632 aa22.56■■□□□ 1.2
COL9A3-201ENST00000343916 STK38Q15208 465 aa22.55■■□□□ 1.2
COL9A3-201ENST00000343916 NFXL1Q6ZNB6 911 aa22.55■■□□□ 1.2
COL9A3-201ENST00000343916 TDRD7Q8NHU6 1098 aaKnown RBP22.55■■□□□ 1.2
COL9A3-201ENST00000343916 TRIM5Q9C035 493 aa22.55■■□□□ 1.2
COL9A3-201ENST00000343916 ZSWIM5Q9P217 1185 aa22.55■■□□□ 1.2
COL9A3-201ENST00000343916 C4AP0C0L4 1744 aa22.55■■□□□ 1.2
COL9A3-201ENST00000343916 C4BP0C0L5 1744 aa22.55■■□□□ 1.2
COL9A3-201ENST00000343916 NRAPQ86VF7 1730 aa22.55■■□□□ 1.2
COL9A3-201ENST00000343916 GSG1L2A8MUP6 293 aa22.55■■□□□ 1.2
COL9A3-201ENST00000343916 KIF23Q02241 960 aaPredicted RBP22.55■■□□□ 1.2
COL9A3-201ENST00000343916 SF3A1Q15459 793 aaKnown RBP22.55■■□□□ 1.2
COL9A3-201ENST00000343916 LY9Q9HBG7 655 aa22.55■■□□□ 1.2
COL9A3-201ENST00000343916 UBE2Q2LH0YL09 131 aa22.54■■□□□ 1.2
COL9A3-201ENST00000343916 TMEM67Q5HYA8 995 aa22.54■■□□□ 1.2
COL9A3-201ENST00000343916 DNTTIP2Q5QJE6 756 aaKnown RBP22.54■■□□□ 1.2
COL9A3-201ENST00000343916 ADALQ6DHV7 355 aa22.54■■□□□ 1.2
COL9A3-201ENST00000343916 MRPS27Q92552 414 aaKnown RBP22.54■■□□□ 1.2
COL9A3-201ENST00000343916 ALG1Q9BT22 464 aa22.54■■□□□ 1.2
COL9A3-201ENST00000343916 NDUFA8P51970 172 aa22.54■■□□□ 1.2
COL9A3-201ENST00000343916 C3orf67Q6ZVT6 689 aa22.54■■□□□ 1.2
COL9A3-201ENST00000343916 FBXW7Q969H0 707 aa22.54■■□□□ 1.2
COL9A3-201ENST00000343916 CTAGE5O15320 804 aa22.53■■□□□ 1.2
COL9A3-201ENST00000343916 ALX1Q15699 326 aa22.53■■□□□ 1.2
COL9A3-201ENST00000343916 TMEM87BQ96K49 555 aa22.53■■□□□ 1.2
COL9A3-201ENST00000343916 POLR3EQ9NVU0 708 aa22.53■■□□□ 1.2
COL9A3-201ENST00000343916 LRP2BPQ9P2M1 347 aa22.53■■□□□ 1.2
COL9A3-201ENST00000343916 PYCARDQ9ULZ3 195 aa22.53■■□□□ 1.2
COL9A3-201ENST00000343916 PTGS1P23219 599 aa22.53■■□□□ 1.2
COL9A3-201ENST00000343916 RRP12Q5JTH9 1297 aaKnown RBP22.53■■□□□ 1.2
COL9A3-201ENST00000343916 BRAPQ7Z569 592 aa22.53■■□□□ 1.2
COL9A3-201ENST00000343916 FMR1NBQ8N0W7 255 aaPredicted RBP22.53■■□□□ 1.2
COL9A3-201ENST00000343916 SLC4A4Q9Y6R1 1079 aa22.53■■□□□ 1.2
COL9A3-201ENST00000343916 SPTLC2O15270 562 aa22.52■■□□□ 1.2
COL9A3-201ENST00000343916 ZBTB43O43298 467 aa22.52■■□□□ 1.2
COL9A3-201ENST00000343916 SYNE3Q6ZMZ3 975 aa22.52■■□□□ 1.2
COL9A3-201ENST00000343916 PKNOX2Q96KN3 472 aa22.52■■□□□ 1.2
COL9A3-201ENST00000343916 ZKSCAN3Q9BRR0 538 aa22.52■■□□□ 1.2
COL9A3-201ENST00000343916 TOMM22Q9NS69 142 aa22.52■■□□□ 1.2
COL9A3-201ENST00000343916 NRBP1Q9UHY1 535 aa22.52■■□□□ 1.2
COL9A3-201ENST00000343916 DOCK2Q92608 1830 aa22.52■■□□□ 1.2
COL9A3-201ENST00000343916 IFIT3O14879 490 aaKnown RBP22.52■■□□□ 1.2
COL9A3-201ENST00000343916 TDO2P48775 406 aa22.52■■□□□ 1.2
COL9A3-201ENST00000343916 IQCB1Q15051 598 aa22.52■■□□□ 1.2
COL9A3-201ENST00000343916 ERFEQ4G0M1 354 aa22.52■■□□□ 1.2
COL9A3-201ENST00000343916 BICDL1Q6ZP65 573 aa22.52■■□□□ 1.2
COL9A3-201ENST00000343916 DRC7Q8IY82 874 aa22.52■■□□□ 1.2
COL9A3-201ENST00000343916 FAM217BQ9NTX9 383 aaPredicted RBP22.52■■□□□ 1.2
COL9A3-201ENST00000343916 GOLGA6L6A8MZA4 724 aa22.51■■□□□ 1.19
COL9A3-201ENST00000343916 RANBP6O60518 1105 aaKnown RBP22.51■■□□□ 1.19
COL9A3-201ENST00000343916 STX1AQ16623 288 aa22.51■■□□□ 1.19
COL9A3-201ENST00000343916 ADGRA1Q86SQ6 560 aa22.51■■□□□ 1.19
COL9A3-201ENST00000343916 PLA2G4DQ86XP0 818 aa22.51■■□□□ 1.19
COL9A3-201ENST00000343916 KCNG4Q8TDN1 519 aa22.51■■□□□ 1.19
COL9A3-201ENST00000343916 GOLGA8AA7E2F4 631 aa22.51■■□□□ 1.19
COL9A3-201ENST00000343916 GYG1P46976 350 aa22.51■■□□□ 1.19
COL9A3-201ENST00000343916 ZNF75DP51815 510 aa22.51■■□□□ 1.19
COL9A3-201ENST00000343916 NTRK3Q16288 839 aa22.51■■□□□ 1.19
COL9A3-201ENST00000343916 AKNAD1Q5T1N1 836 aa22.51■■□□□ 1.19
COL9A3-201ENST00000343916 KRT40Q6A162 431 aa22.51■■□□□ 1.19
COL9A3-201ENST00000343916 LINC00116Q8NCU8 138 aa22.51■■□□□ 1.19
COL9A3-201ENST00000343916 SDF4Q9BRK5 362 aa22.51■■□□□ 1.19
COL9A3-201ENST00000343916 ABCF2Q9UG63 623 aa22.51■■□□□ 1.19
COL9A3-201ENST00000343916 YEATS4O95619 227 aa22.5■■□□□ 1.19
COL9A3-201ENST00000343916 MFSD6Q6ZSS7 791 aa22.5■■□□□ 1.19
COL9A3-201ENST00000343916 SGMS1Q86VZ5 419 aa22.5■■□□□ 1.19
COL9A3-201ENST00000343916 VPS37DQ86XT2 251 aa22.5■■□□□ 1.19
COL9A3-201ENST00000343916 MARCKSP29966 332 aaPredicted RBP22.5■■□□□ 1.19
COL9A3-201ENST00000343916 FAM98CQ17RN3 349 aaKnown RBP22.5■■□□□ 1.19
COL9A3-201ENST00000343916 ANO1Q5XXA6 986 aa22.5■■□□□ 1.19
COL9A3-201ENST00000343916 CCDC186Q7Z3E2 898 aa22.5■■□□□ 1.19
COL9A3-201ENST00000343916 ZNF652Q9Y2D9 606 aa22.5■■□□□ 1.19
COL9A3-201ENST00000343916 SLC12A7Q9Y666 1083 aa22.5■■□□□ 1.19
COL9A3-201ENST00000343916 TAF1P21675 1872 aa22.5■■□□□ 1.19
COL9A3-201ENST00000343916 RTL9Q8NET4 1388 aa22.49■■□□□ 1.19
COL9A3-201ENST00000343916 A0A1W2PQ27 194 aa22.49■■□□□ 1.19
COL9A3-201ENST00000343916 A0A1W2PQ64 194 aa22.49■■□□□ 1.19
COL9A3-201ENST00000343916 A0A1W2PQD8 194 aa22.49■■□□□ 1.19
COL9A3-201ENST00000343916 CDKL5O76039 1030 aa22.49■■□□□ 1.19
COL9A3-201ENST00000343916 KIAA1524Q8TCG1 905 aa22.49■■□□□ 1.19
COL9A3-201ENST00000343916 RREB1Q92766 1687 aa22.49■■□□□ 1.19
COL9A3-201ENST00000343916 GOLGA6L19H0YKK7 550 aa22.49■■□□□ 1.19
COL9A3-201ENST00000343916 IARSP41252 1262 aaKnown RBP22.49■■□□□ 1.19
COL9A3-201ENST00000343916 BARGINQ6ZT62 677 aa22.49■■□□□ 1.19
COL9A3-201ENST00000343916 SDR42E1Q8WUS8 393 aa22.49■■□□□ 1.19
COL9A3-201ENST00000343916 CDC5LQ99459 802 aaKnown RBP22.49■■□□□ 1.19
COL9A3-201ENST00000343916 CAVIN2O95810 425 aa22.48■■□□□ 1.19
COL9A3-201ENST00000343916 CPLX2Q6PUV4 134 aaKnown RBP22.48■■□□□ 1.19
COL9A3-201ENST00000343916 PTF1AQ7RTS3 328 aa22.48■■□□□ 1.19
COL9A3-201ENST00000343916 BCL9LQ86UU0 1499 aa22.48■■□□□ 1.19
COL9A3-201ENST00000343916 CCDC69A6NI79 296 aa22.48■■□□□ 1.19
COL9A3-201ENST00000343916 SMIM22K7EJ46 135 aa22.48■■□□□ 1.19
COL9A3-201ENST00000343916 CYP7A1P22680 504 aa22.48■■□□□ 1.19
COL9A3-201ENST00000343916 CHD4Q14839 1912 aa22.47■■□□□ 1.19
COL9A3-201ENST00000343916 WDHD1O75717 1129 aaPredicted RBP22.47■■□□□ 1.19
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms