RNA–Protein interactions for RNA: ENST00000343524.9

ATG4A-201, Transcript of autophagy related 4A cysteine peptidase, humanhuman

TSL 2

Gene ATG4A, Length 1,941 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4A-201ENST00000343524 GGNBP2Q9H3C7 697 aa9.33□□□□□ -0.92
ATG4A-201ENST00000343524 AKAP2Q9Y2D5 859 aa9.33□□□□□ -0.92
ATG4A-201ENST00000343524 PLCH1Q4KWH8 1693 aa9.33□□□□□ -0.92
ATG4A-201ENST00000343524 SHTN1A0MZ66 631 aa9.33□□□□□ -0.92
ATG4A-201ENST00000343524 CCDC189A1A4V9 331 aa9.33□□□□□ -0.92
ATG4A-201ENST00000343524 FAM83GA6ND36 823 aa9.33□□□□□ -0.92
ATG4A-201ENST00000343524 IKBKBO14920 756 aa9.33□□□□□ -0.92
ATG4A-201ENST00000343524 ECM2O94769 699 aaPredicted RBP9.33□□□□□ -0.92
ATG4A-201ENST00000343524 HNRNPH1P31943 449 aaKnown RBP9.33□□□□□ -0.92
ATG4A-201ENST00000343524 NF2P35240 595 aa9.33□□□□□ -0.92
ATG4A-201ENST00000343524 MCM6Q14566 821 aa9.33□□□□□ -0.92
ATG4A-201ENST00000343524 ME3Q16798 604 aa9.33□□□□□ -0.92
ATG4A-201ENST00000343524 ARSIQ5FYB1 569 aa9.33□□□□□ -0.92
ATG4A-201ENST00000343524 FERMT3Q86UX7 667 aa9.33□□□□□ -0.92
ATG4A-201ENST00000343524 CCDC102AQ96A19 550 aa9.33□□□□□ -0.92
ATG4A-201ENST00000343524 CABS1Q96KC9 395 aa9.33□□□□□ -0.92
ATG4A-201ENST00000343524 SYT17Q9BSW7 474 aa9.33□□□□□ -0.92
ATG4A-201ENST00000343524 IFNKQ9P0W0 207 aa9.33□□□□□ -0.92
ATG4A-201ENST00000343524 SHANK3Q9BYB0 1731 aa9.32□□□□□ -0.92
ATG4A-201ENST00000343524 HIP1O00291 1037 aa9.32□□□□□ -0.92
ATG4A-201ENST00000343524 STK25O00506 426 aa9.32□□□□□ -0.92
ATG4A-201ENST00000343524 TRIM37O94972 964 aa9.32□□□□□ -0.92
ATG4A-201ENST00000343524 ELF1P32519 619 aa9.32□□□□□ -0.92
ATG4A-201ENST00000343524 AARSP49588 968 aaKnown RBP eCLIP9.32□□□□□ -0.92
ATG4A-201ENST00000343524 GNG11P61952 73 aa9.32□□□□□ -0.92
ATG4A-201ENST00000343524 ATP8B2P98198 1209 aa9.32□□□□□ -0.92
ATG4A-201ENST00000343524 KIF4BQ2VIQ3 1234 aa9.32□□□□□ -0.92
ATG4A-201ENST00000343524 C11orf91Q3C1V1 193 aa9.32□□□□□ -0.92
ATG4A-201ENST00000343524 EP400NLQ6ZTU2 488 aa9.32□□□□□ -0.92
ATG4A-201ENST00000343524 PPP2R2CQ9Y2T4 447 aa9.32□□□□□ -0.92
ATG4A-201ENST00000343524 NRXN3Q9Y4C0 1643 aa9.32□□□□□ -0.92
ATG4A-201ENST00000343524 CASZ1Q86V15 1759 aa9.32□□□□□ -0.92
ATG4A-201ENST00000343524 VWA3AA6NCI4 1184 aa9.31□□□□□ -0.92
ATG4A-201ENST00000343524 H3BQV1 296 aa9.31□□□□□ -0.92
ATG4A-201ENST00000343524 FYB1O15117 783 aa9.31□□□□□ -0.92
ATG4A-201ENST00000343524 INPP5BP32019 993 aa9.31□□□□□ -0.92
ATG4A-201ENST00000343524 RESTQ13127 1097 aa9.31□□□□□ -0.92
ATG4A-201ENST00000343524 BICC1Q9H694 974 aaKnown RBP9.31□□□□□ -0.92
ATG4A-201ENST00000343524 FAM204AQ9H8W3 233 aa9.31□□□□□ -0.92
ATG4A-201ENST00000343524 VEZTQ9HBM0 779 aa9.31□□□□□ -0.92
ATG4A-201ENST00000343524 L1RE1Q9UN81 338 aa9.31□□□□□ -0.92
ATG4A-201ENST00000343524 ADCY9O60503 1353 aa9.31□□□□□ -0.92
ATG4A-201ENST00000343524 METP08581 1390 aa9.31□□□□□ -0.92
ATG4A-201ENST00000343524 MAP3K5Q99683 1374 aa9.31□□□□□ -0.92
ATG4A-201ENST00000343524 H0YHG0 523 aa9.31□□□□□ -0.92
ATG4A-201ENST00000343524 CHUKO15111 745 aa9.31□□□□□ -0.92
ATG4A-201ENST00000343524 STX10O60499 249 aa9.31□□□□□ -0.92
ATG4A-201ENST00000343524 SHOX2O60902 331 aaPredicted RBP9.31□□□□□ -0.92
ATG4A-201ENST00000343524 GCFC2P16383 781 aaKnown RBP9.31□□□□□ -0.92
ATG4A-201ENST00000343524 PTGER2P43116 358 aa9.31□□□□□ -0.92
ATG4A-201ENST00000343524 SARNPP82979 210 aaKnown RBP9.31□□□□□ -0.92
ATG4A-201ENST00000343524 ST3GAL1Q11201 340 aa9.31□□□□□ -0.92
ATG4A-201ENST00000343524 CASP8Q14790 479 aa9.31□□□□□ -0.92
ATG4A-201ENST00000343524 CRYMQ14894 314 aa9.31□□□□□ -0.92
ATG4A-201ENST00000343524 HSP90AB4PQ58FF6 505 aa9.31□□□□□ -0.92
ATG4A-201ENST00000343524 FAM196AQ6ZSG2 479 aa9.31□□□□□ -0.92
ATG4A-201ENST00000343524 AMOTL1Q8IY63 956 aa9.31□□□□□ -0.92
ATG4A-201ENST00000343524 TEX11Q8IYF3 940 aa9.31□□□□□ -0.92
ATG4A-201ENST00000343524 PRPF38AQ8NAV1 312 aaKnown RBP9.31□□□□□ -0.92
ATG4A-201ENST00000343524 SMARCC1Q92922 1105 aaPredicted RBP9.31□□□□□ -0.92
ATG4A-201ENST00000343524 USP42Q9H9J4 1324 aaKnown RBP9.31□□□□□ -0.92
ATG4A-201ENST00000343524 ABCC6O95255 1503 aa9.3□□□□□ -0.92
ATG4A-201ENST00000343524 KIAA0754O94854 1291 aa9.3□□□□□ -0.92
ATG4A-201ENST00000343524 TOP1P11387 765 aaKnown RBP9.3□□□□□ -0.92
ATG4A-201ENST00000343524 GPTP24298 496 aa9.3□□□□□ -0.92
ATG4A-201ENST00000343524 ARHGAP25P42331 645 aa9.3□□□□□ -0.92
ATG4A-201ENST00000343524 PPP2R5AQ15172 486 aa9.3□□□□□ -0.92
ATG4A-201ENST00000343524 ZKSCAN8Q15776 578 aaPredicted RBP9.3□□□□□ -0.92
ATG4A-201ENST00000343524 TSHZ3Q63HK5 1081 aa9.3□□□□□ -0.92
ATG4A-201ENST00000343524 FOXR1Q6PIV2 292 aa9.3□□□□□ -0.92
ATG4A-201ENST00000343524 MICALCLQ6ZW33 695 aa9.3□□□□□ -0.92
ATG4A-201ENST00000343524 B4GALNT4Q76KP1 1039 aa9.3□□□□□ -0.92
ATG4A-201ENST00000343524 KHSRPQ92945 711 aaKnown RBP eCLIP9.3□□□□□ -0.92
ATG4A-201ENST00000343524 THUMPD2Q9BTF0 503 aaKnown RBP9.3□□□□□ -0.92
ATG4A-201ENST00000343524 FHDC1Q9C0D6 1143 aaPredicted RBP9.3□□□□□ -0.92
ATG4A-201ENST00000343524 TFIP11Q9UBB9 837 aaKnown RBP9.3□□□□□ -0.92
ATG4A-201ENST00000343524 RCOR1Q9UKL0 485 aa9.3□□□□□ -0.92
ATG4A-201ENST00000343524 ATP7BP35670 1465 aa9.3□□□□□ -0.92
ATG4A-201ENST00000343524 DLC1Q96QB1 1528 aa9.3□□□□□ -0.92
ATG4A-201ENST00000343524 THSD7AQ9UPZ6 1657 aa9.3□□□□□ -0.92
ATG4A-201ENST00000343524 A0A1B0GUA9 196 aa9.29□□□□□ -0.92
ATG4A-201ENST00000343524 KLHL33A6NCF5 533 aa9.29□□□□□ -0.92
ATG4A-201ENST00000343524 RGL2O15211 777 aa9.29□□□□□ -0.92
ATG4A-201ENST00000343524 CUTAO60888 179 aa9.29□□□□□ -0.92
ATG4A-201ENST00000343524 RNF40O75150 1001 aa9.29□□□□□ -0.92
ATG4A-201ENST00000343524 WDHD1O75717 1129 aaPredicted RBP9.29□□□□□ -0.92
ATG4A-201ENST00000343524 GLRX3O76003 335 aaKnown RBP9.29□□□□□ -0.92
ATG4A-201ENST00000343524 FANCCQ00597 558 aa9.29□□□□□ -0.92
ATG4A-201ENST00000343524 PLCB4Q15147 1175 aa9.29□□□□□ -0.92
ATG4A-201ENST00000343524 COL13A1Q5TAT6 717 aaPredicted RBP9.29□□□□□ -0.92
ATG4A-201ENST00000343524 NAA16Q6N069 864 aaPredicted RBP9.29□□□□□ -0.92
ATG4A-201ENST00000343524 LARP1Q6PKG0 1096 aaKnown RBP9.29□□□□□ -0.92
ATG4A-201ENST00000343524 BLOC1S2Q6QNY1 142 aa9.29□□□□□ -0.92
ATG4A-201ENST00000343524 CCDC50Q8IVM0 306 aa9.29□□□□□ -0.92
ATG4A-201ENST00000343524 CCDC12Q8WUD4 166 aaPredicted RBP9.29□□□□□ -0.92
ATG4A-201ENST00000343524 MRPS27Q92552 414 aaKnown RBP9.29□□□□□ -0.92
ATG4A-201ENST00000343524 KIFC2Q96AC6 838 aa9.29□□□□□ -0.92
ATG4A-201ENST00000343524 MIEF2Q96C03 454 aa9.29□□□□□ -0.92
ATG4A-201ENST00000343524 GPATCH3Q96I76 525 aa9.29□□□□□ -0.92
ATG4A-201ENST00000343524 HMG20BQ9P0W2 317 aa9.29□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms