RNA–Protein interactions for RNA: ENST00000338850.5

RTN3-201, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 493 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-201ENST00000338850 NAA16Q6N069 864 aaPredicted RBP12.69□□□□□ -0.38
RTN3-201ENST00000338850 KBTBD3Q8NAB2 608 aa12.69□□□□□ -0.38
RTN3-201ENST00000338850 SMARCC2Q8TAQ2 1214 aa12.69□□□□□ -0.38
RTN3-201ENST00000338850 FAM200AQ8TCP9 573 aa12.69□□□□□ -0.38
RTN3-201ENST00000338850 MYD88Q99836 296 aa12.69□□□□□ -0.38
RTN3-201ENST00000338850 PDCL3Q9H2J4 239 aa12.69□□□□□ -0.38
RTN3-201ENST00000338850 DUOX1Q9NRD9 1551 aa12.69□□□□□ -0.38
RTN3-201ENST00000338850 GOLGA6L6A8MZA4 724 aa12.68□□□□□ -0.38
RTN3-201ENST00000338850 HMGN5P82970 282 aaKnown RBP12.68□□□□□ -0.38
RTN3-201ENST00000338850 DNM1Q05193 864 aaKnown RBP12.68□□□□□ -0.38
RTN3-201ENST00000338850 HSP90AA2PQ14568 343 aaPredicted RBP12.68□□□□□ -0.38
RTN3-201ENST00000338850 LRRFIP1Q32MZ4 808 aaKnown RBP12.68□□□□□ -0.38
RTN3-201ENST00000338850 MCMDC2Q4G0Z9 681 aa12.68□□□□□ -0.38
RTN3-201ENST00000338850 EPHA10Q5JZY3 1008 aa12.68□□□□□ -0.38
RTN3-201ENST00000338850 USP50Q70EL3 339 aaPredicted RBP12.68□□□□□ -0.38
RTN3-201ENST00000338850 ARHGAP30Q7Z6I6 1101 aaPredicted RBP12.68□□□□□ -0.38
RTN3-201ENST00000338850 TTC6Q86TZ1 520 aa12.68□□□□□ -0.38
RTN3-201ENST00000338850 CELF1Q92879 486 aaKnown RBP12.68□□□□□ -0.38
RTN3-201ENST00000338850 CCDC8Q9H0W5 538 aaPredicted RBP12.68□□□□□ -0.38
RTN3-201ENST00000338850 GDPD2Q9HCC8 539 aa12.68□□□□□ -0.38
RTN3-201ENST00000338850 TLR7Q9NYK1 1049 aaKnown RBP12.68□□□□□ -0.38
RTN3-201ENST00000338850 GPRC5DQ9NZD1 345 aa12.68□□□□□ -0.38
RTN3-201ENST00000338850 LRRC37AA6NMS7 1700 aa12.68□□□□□ -0.38
RTN3-201ENST00000338850 COL4A1P02462 1669 aa12.67□□□□□ -0.38
RTN3-201ENST00000338850 IRS4O14654 1257 aaPredicted RBP12.67□□□□□ -0.38
RTN3-201ENST00000338850 PTMAP06454 111 aaKnown RBP12.67□□□□□ -0.38
RTN3-201ENST00000338850 GTF2F1P35269 517 aaKnown RBP eCLIP12.67□□□□□ -0.383e-7■■■■■ 29.2
RTN3-201ENST00000338850 IL15P40933 162 aaPredicted RBP12.67□□□□□ -0.38
RTN3-201ENST00000338850 GMPSP49915 693 aaPredicted RBP12.67□□□□□ -0.38
RTN3-201ENST00000338850 MAP3K11Q16584 847 aa12.67□□□□□ -0.38
RTN3-201ENST00000338850 ZBTB38Q8NAP3 1195 aaPredicted RBP12.67□□□□□ -0.38
RTN3-201ENST00000338850 RNF214Q8ND24 703 aa12.67□□□□□ -0.38
RTN3-201ENST00000338850 NEK1Q96PY6 1258 aa12.67□□□□□ -0.38
RTN3-201ENST00000338850 NUP62CLQ9H1M0 184 aa12.67□□□□□ -0.38
RTN3-201ENST00000338850 BOLA2Q9H3K6 86 aa12.67□□□□□ -0.38
RTN3-201ENST00000338850 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP12.67□□□□□ -0.385e-7■□□□□ 10.4
RTN3-201ENST00000338850 WDR19Q8NEZ3 1342 aa12.66□□□□□ -0.38
RTN3-201ENST00000338850 TAF1P21675 1872 aa12.66□□□□□ -0.38
RTN3-201ENST00000338850 PFKFB2O60825 505 aa12.66□□□□□ -0.38
RTN3-201ENST00000338850 ADCY5O95622 1261 aa12.66□□□□□ -0.38
RTN3-201ENST00000338850 VEGFBP49765 207 aa12.66□□□□□ -0.38
RTN3-201ENST00000338850 EVCP57679 992 aa12.66□□□□□ -0.38
RTN3-201ENST00000338850 CIAPIN1Q6FI81 312 aa12.66□□□□□ -0.38
RTN3-201ENST00000338850 CDC37L1Q7L3B6 337 aa12.66□□□□□ -0.38
RTN3-201ENST00000338850 ZNF589Q86UQ0 364 aaPredicted RBP12.66□□□□□ -0.38
RTN3-201ENST00000338850 CCDC191Q8NCU4 936 aa12.66□□□□□ -0.38
RTN3-201ENST00000338850 CLSTN2Q9H4D0 955 aa12.66□□□□□ -0.38
RTN3-201ENST00000338850 ADARB2Q9NS39 739 aaKnown RBP12.66□□□□□ -0.38
RTN3-201ENST00000338850 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP12.66□□□□□ -0.38
RTN3-201ENST00000338850 CDHR2Q9BYE9 1310 aa12.65□□□□□ -0.38
RTN3-201ENST00000338850 VPS37CA5D8V6 355 aaPredicted RBP12.65□□□□□ -0.38
RTN3-201ENST00000338850 RASSF10A6NK89 507 aa12.65□□□□□ -0.38
RTN3-201ENST00000338850 YDJCA8MPS7 323 aa12.65□□□□□ -0.38
RTN3-201ENST00000338850 CTAGE5O15320 804 aa12.65□□□□□ -0.38
RTN3-201ENST00000338850 RAD17O75943 681 aa12.65□□□□□ -0.38
RTN3-201ENST00000338850 PCCAP05165 728 aaPredicted RBP12.65□□□□□ -0.38
RTN3-201ENST00000338850 CPA1P15085 419 aa12.65□□□□□ -0.38
RTN3-201ENST00000338850 FMR1Q06787 632 aaKnown RBP eCLIP12.65□□□□□ -0.38
RTN3-201ENST00000338850 RESTQ13127 1097 aa12.65□□□□□ -0.38
RTN3-201ENST00000338850 TNIP1Q15025 636 aa12.65□□□□□ -0.38
RTN3-201ENST00000338850 ZMYM1Q5SVZ6 1142 aa12.65□□□□□ -0.38
RTN3-201ENST00000338850 PLA2G12BQ9BX93 195 aa12.65□□□□□ -0.38
RTN3-201ENST00000338850 CFAP45Q9UL16 551 aa12.65□□□□□ -0.38
RTN3-201ENST00000338850 PCNTO95613 3336 aa12.65□□□□□ -0.38
RTN3-201ENST00000338850 SALL1Q9NSC2 1324 aa12.64□□□□□ -0.39
RTN3-201ENST00000338850 ZFYP08048 801 aaPredicted RBP12.64□□□□□ -0.39
RTN3-201ENST00000338850 CDC25BP30305 580 aa12.64□□□□□ -0.39
RTN3-201ENST00000338850 RPS8P62241 208 aaKnown RBP12.64□□□□□ -0.39
RTN3-201ENST00000338850 GPSM2P81274 684 aa12.64□□□□□ -0.39
RTN3-201ENST00000338850 FOXO4P98177 505 aa12.64□□□□□ -0.39
RTN3-201ENST00000338850 TFCP2Q12800 502 aa12.64□□□□□ -0.39
RTN3-201ENST00000338850 DHX32Q7L7V1 743 aaKnown RBP12.64□□□□□ -0.39
RTN3-201ENST00000338850 UBE3BQ7Z3V4 1068 aa12.64□□□□□ -0.39
RTN3-201ENST00000338850 TDRD7Q8NHU6 1098 aaKnown RBP12.64□□□□□ -0.39
RTN3-201ENST00000338850 LEO1Q8WVC0 666 aaPredicted RBP12.64□□□□□ -0.39
RTN3-201ENST00000338850 CWC25Q9NXE8 425 aaPredicted RBP12.64□□□□□ -0.39
RTN3-201ENST00000338850 POLLQ9UGP5 575 aa12.64□□□□□ -0.39
RTN3-201ENST00000338850 DOCK2Q92608 1830 aa12.63□□□□□ -0.39
RTN3-201ENST00000338850 TRAF5O00463 557 aa12.63□□□□□ -0.39
RTN3-201ENST00000338850 HSP90B1P14625 803 aaKnown RBP12.63□□□□□ -0.39
RTN3-201ENST00000338850 WASHC4Q2M389 1173 aa12.63□□□□□ -0.39
RTN3-201ENST00000338850 DEFB115Q30KQ5 88 aa12.63□□□□□ -0.39
RTN3-201ENST00000338850 ATG9AQ7Z3C6 839 aa12.63□□□□□ -0.39
RTN3-201ENST00000338850 TNS4Q8IZW8 715 aa12.63□□□□□ -0.39
RTN3-201ENST00000338850 MYRIPQ8NFW9 859 aa12.63□□□□□ -0.39
RTN3-201ENST00000338850 ZNF274Q96GC6 653 aaPredicted RBP12.63□□□□□ -0.39
RTN3-201ENST00000338850 SPATA32Q96LK8 384 aa12.63□□□□□ -0.39
RTN3-201ENST00000338850 SEC31BQ9NQW1 1179 aa12.63□□□□□ -0.39
RTN3-201ENST00000338850 AKAP11Q9UKA4 1901 aa12.62□□□□□ -0.39
RTN3-201ENST00000338850 C6orf229H3BNL8 230 aa12.62□□□□□ -0.39
RTN3-201ENST00000338850 EYA2O00167 538 aa12.62□□□□□ -0.39
RTN3-201ENST00000338850 FOXN1O15353 648 aa12.62□□□□□ -0.39
RTN3-201ENST00000338850 PDE8AO60658 829 aa12.62□□□□□ -0.39
RTN3-201ENST00000338850 CYP21A2P08686 494 aa12.62□□□□□ -0.39
RTN3-201ENST00000338850 HIRAP54198 1017 aaPredicted RBP12.62□□□□□ -0.39
RTN3-201ENST00000338850 EXOSC10Q01780 885 aaKnown RBP12.62□□□□□ -0.39
RTN3-201ENST00000338850 TYRO3Q06418 890 aa12.62□□□□□ -0.39
RTN3-201ENST00000338850 SARM1Q6SZW1 724 aa12.62□□□□□ -0.39
RTN3-201ENST00000338850 NECAB1Q8N987 351 aa12.62□□□□□ -0.39
RTN3-201ENST00000338850 TBC1D16Q8TBP0 767 aa12.62□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms