RNA–Protein interactions for RNA: ENST00000331194.8

CCDC88C-201, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5 BASIC

Gene CCDC88C, Length 3,104 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-201ENST00000331194 ANO1Q5XXA6 986 aa15.43■□□□□ 0.06
CCDC88C-201ENST00000331194 YY1AP1Q9H869 796 aa15.43■□□□□ 0.06
CCDC88C-201ENST00000331194 LRRC37A3O60309 1634 aa15.43■□□□□ 0.06
CCDC88C-201ENST00000331194 ABCC6O95255 1503 aa15.43■□□□□ 0.06
CCDC88C-201ENST00000331194 IGKV5-2P06315 115 aa15.43■□□□□ 0.06
CCDC88C-201ENST00000331194 MMP14P50281 582 aa15.43■□□□□ 0.06
CCDC88C-201ENST00000331194 LONRF3Q496Y0 759 aa15.43■□□□□ 0.06
CCDC88C-201ENST00000331194 SHC4Q6S5L8 630 aa15.43■□□□□ 0.06
CCDC88C-201ENST00000331194 CNPY4Q8N129 248 aa15.43■□□□□ 0.06
CCDC88C-201ENST00000331194 GOLGA6L1Q8N7Z2 621 aa15.43■□□□□ 0.06
CCDC88C-201ENST00000331194 RGPD8O14715 1765 aaPredicted RBP15.42■□□□□ 0.06
CCDC88C-201ENST00000331194 GOLIM4O00461 696 aa15.42■□□□□ 0.06
CCDC88C-201ENST00000331194 ATP5JP18859 108 aa15.42■□□□□ 0.06
CCDC88C-201ENST00000331194 CMA1P23946 247 aa15.42■□□□□ 0.06
CCDC88C-201ENST00000331194 PIP4K2AP48426 406 aaPredicted RBP15.42■□□□□ 0.06
CCDC88C-201ENST00000331194 TNNI3KQ59H18 835 aa15.42■□□□□ 0.06
CCDC88C-201ENST00000331194 HDXQ7Z353 690 aa15.42■□□□□ 0.06
CCDC88C-201ENST00000331194 POLR3EQ9NVU0 708 aa15.42■□□□□ 0.06
CCDC88C-201ENST00000331194 L1RE1Q9UN81 338 aa15.42■□□□□ 0.06
CCDC88C-201ENST00000331194 PCDHA5Q9Y5H7 936 aa15.42■□□□□ 0.06
CCDC88C-201ENST00000331194 FPGT-TNNI3KV9GXZ4 949 aa15.42■□□□□ 0.06
CCDC88C-201ENST00000331194 FMR1Q06787 632 aaKnown RBP eCLIP15.42■□□□□ 0.06
CCDC88C-201ENST00000331194 BRD3Q15059 726 aa15.42■□□□□ 0.06
CCDC88C-201ENST00000331194 SRGAP1Q7Z6B7 1085 aa15.42■□□□□ 0.06
CCDC88C-201ENST00000331194 METTL16Q86W50 562 aaKnown RBP15.42■□□□□ 0.06
CCDC88C-201ENST00000331194 CNNM3Q8NE01 707 aa15.42■□□□□ 0.06
CCDC88C-201ENST00000331194 ARHGAP23Q9P227 1491 aa15.42■□□□□ 0.06
CCDC88C-201ENST00000331194 LAMA4Q16363 1823 aa15.42■□□□□ 0.06
CCDC88C-201ENST00000331194 TBX2Q13207 712 aaPredicted RBP15.41■□□□□ 0.06
CCDC88C-201ENST00000331194 TUBE1Q9UJT0 475 aa15.41■□□□□ 0.06
CCDC88C-201ENST00000331194 FMN2Q9NZ56 1722 aa15.41■□□□□ 0.06
CCDC88C-201ENST00000331194 YEATS4O95619 227 aa15.41■□□□□ 0.06
CCDC88C-201ENST00000331194 LINS1Q8NG48 757 aa15.41■□□□□ 0.06
CCDC88C-201ENST00000331194 CABLES1Q8TDN4 633 aa15.41■□□□□ 0.06
CCDC88C-201ENST00000331194 GDAP1L1Q96MZ0 367 aa15.41■□□□□ 0.06
CCDC88C-201ENST00000331194 RABEP2Q9H5N1 569 aa15.41■□□□□ 0.06
CCDC88C-201ENST00000331194 BABAM1Q9NWV8 329 aa15.41■□□□□ 0.06
CCDC88C-201ENST00000331194 LRRIQ3A6PVS8 624 aaPredicted RBP15.41■□□□□ 0.06
CCDC88C-201ENST00000331194 IVLP07476 585 aa15.41■□□□□ 0.06
CCDC88C-201ENST00000331194 MYL6BP14649 208 aa15.41■□□□□ 0.06
CCDC88C-201ENST00000331194 GUCY2CP25092 1073 aa15.41■□□□□ 0.06
CCDC88C-201ENST00000331194 ZNF569Q5MCW4 686 aa15.41■□□□□ 0.06
CCDC88C-201ENST00000331194 FCHSD1Q86WN1 690 aa15.41■□□□□ 0.06
CCDC88C-201ENST00000331194 CASP8Q14790 479 aa15.4■□□□□ 0.06
CCDC88C-201ENST00000331194 RAD9BQ6WBX8 426 aa15.4■□□□□ 0.06
CCDC88C-201ENST00000331194 FAM204AQ9H8W3 233 aa15.4■□□□□ 0.06
CCDC88C-201ENST00000331194 SAMSN1Q9NSI8 373 aaKnown RBP15.4■□□□□ 0.06
CCDC88C-201ENST00000331194 CLGNO14967 610 aa15.4■□□□□ 0.06
CCDC88C-201ENST00000331194 STX10O60499 249 aa15.4■□□□□ 0.06
CCDC88C-201ENST00000331194 SLIT1O75093 1534 aa15.4■□□□□ 0.06
CCDC88C-201ENST00000331194 HSPD1P10809 573 aaKnown RBP15.4■□□□□ 0.06
CCDC88C-201ENST00000331194 RXRAP19793 462 aa15.4■□□□□ 0.06
CCDC88C-201ENST00000331194 NOM1Q5C9Z4 860 aaKnown RBP15.4■□□□□ 0.06
CCDC88C-201ENST00000331194 OLFM4Q6UX06 510 aa15.4■□□□□ 0.06
CCDC88C-201ENST00000331194 RIN2Q8WYP3 895 aaPredicted RBP15.4■□□□□ 0.06
CCDC88C-201ENST00000331194 GNL3Q9BVP2 549 aaKnown RBP eCLIP15.4■□□□□ 0.06
CCDC88C-201ENST00000331194 AGXT2Q9BYV1 514 aa15.4■□□□□ 0.06
CCDC88C-201ENST00000331194 TEX33O43247 280 aa15.39■□□□□ 0.05
CCDC88C-201ENST00000331194 HMGB1P09429 215 aaKnown RBP15.39■□□□□ 0.05
CCDC88C-201ENST00000331194 PPP1R3FQ6ZSY5 799 aaPredicted RBP15.39■□□□□ 0.05
CCDC88C-201ENST00000331194 RIC3Q7Z5B4 369 aa15.39■□□□□ 0.05
CCDC88C-201ENST00000331194 GRAMD1CQ8IYS0 662 aa15.39■□□□□ 0.05
CCDC88C-201ENST00000331194 LRRC59Q96AG4 307 aaKnown RBP15.39■□□□□ 0.05
CCDC88C-201ENST00000331194 NEUROD6Q96NK8 337 aa15.39■□□□□ 0.05
CCDC88C-201ENST00000331194 CDC5LQ99459 802 aaKnown RBP15.39■□□□□ 0.05
CCDC88C-201ENST00000331194 TEX13AQ9BXU3 409 aaPredicted RBP15.39■□□□□ 0.05
CCDC88C-201ENST00000331194 NFE2L3Q9Y4A8 694 aa15.39■□□□□ 0.05
CCDC88C-201ENST00000331194 ZC3H6P61129 1189 aaKnown RBP15.39■□□□□ 0.05
CCDC88C-201ENST00000331194 DHX8Q14562 1220 aaKnown RBP15.39■□□□□ 0.05
CCDC88C-201ENST00000331194 KIF4BQ2VIQ3 1234 aa15.39■□□□□ 0.05
CCDC88C-201ENST00000331194 SPECC1LQ69YQ0 1117 aa15.39■□□□□ 0.05
CCDC88C-201ENST00000331194 NOA1Q8NC60 698 aaKnown RBP15.39■□□□□ 0.05
CCDC88C-201ENST00000331194 ZNF274Q96GC6 653 aaPredicted RBP15.39■□□□□ 0.05
CCDC88C-201ENST00000331194 CEMIPQ8WUJ3 1361 aa15.39■□□□□ 0.05
CCDC88C-201ENST00000331194 NALCNQ8IZF0 1738 aa15.39■□□□□ 0.05
CCDC88C-201ENST00000331194 KLF18A0A0U1RQI7 1052 aa15.39■□□□□ 0.05
CCDC88C-201ENST00000331194 UBE2Q2LH0YL09 131 aa15.39■□□□□ 0.05
CCDC88C-201ENST00000331194 KIF23Q02241 960 aaPredicted RBP15.39■□□□□ 0.05
CCDC88C-201ENST00000331194 HSP90AB3PQ58FF7 597 aa15.39■□□□□ 0.05
CCDC88C-201ENST00000331194 C19orf44Q9H6X5 657 aa15.39■□□□□ 0.05
CCDC88C-201ENST00000331194 CORO7P57737 925 aa15.38■□□□□ 0.05
CCDC88C-201ENST00000331194 TIMM10P62072 90 aa15.38■□□□□ 0.05
CCDC88C-201ENST00000331194 MED15Q96RN5 788 aa15.38■□□□□ 0.05
CCDC88C-201ENST00000331194 HINFPQ9BQA5 517 aa15.38■□□□□ 0.05
CCDC88C-201ENST00000331194 GOLGA8BA8MQT2 603 aa15.38■□□□□ 0.05
CCDC88C-201ENST00000331194 PTPN12Q05209 780 aaKnown RBP15.38■□□□□ 0.05
CCDC88C-201ENST00000331194 CTR9Q6PD62 1173 aa15.38■□□□□ 0.05
CCDC88C-201ENST00000331194 CDC23Q9UJX2 597 aa15.38■□□□□ 0.05
CCDC88C-201ENST00000331194 DENND2AQ9ULE3 1009 aa15.38■□□□□ 0.05
CCDC88C-201ENST00000331194 SLC39A14Q15043 492 aa15.37■□□□□ 0.05
CCDC88C-201ENST00000331194 ZNF530Q6P9A1 599 aaPredicted RBP15.37■□□□□ 0.05
CCDC88C-201ENST00000331194 MYD88Q99836 296 aa15.37■□□□□ 0.05
CCDC88C-201ENST00000331194 HAUS7Q99871 368 aa15.37■□□□□ 0.05
CCDC88C-201ENST00000331194 HPS5Q9UPZ3 1129 aa15.37■□□□□ 0.05
CCDC88C-201ENST00000331194 NWD1Q149M9 1564 aa15.37■□□□□ 0.05
CCDC88C-201ENST00000331194 ATP2B1P20020 1258 aa15.37■□□□□ 0.05
CCDC88C-201ENST00000331194 KBTBD3Q8NAB2 608 aa15.37■□□□□ 0.05
CCDC88C-201ENST00000331194 RAB21Q9UL25 225 aa15.37■□□□□ 0.05
CCDC88C-201ENST00000331194 PALLDQ8WX93 1383 aa15.37■□□□□ 0.05
CCDC88C-201ENST00000331194 GOLGA6L9A6NEM1 432 aa15.37■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms