RNA–Protein interactions for RNA: ENST00000302516.9

SF3B3-201, Transcript of splicing factor 3b subunit 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B3, Length 9,720 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-201ENST00000302516 MIPOL1Q8TD10 442 aa8.57□□□□□ -1.04
SF3B3-201ENST00000302516 RAB3IPQ96QF0 476 aaPredicted RBP8.57□□□□□ -1.04
SF3B3-201ENST00000302516 MARCKSP29966 332 aaPredicted RBP8.57□□□□□ -1.04
SF3B3-201ENST00000302516 PAK2Q13177 524 aa8.57□□□□□ -1.04
SF3B3-201ENST00000302516 PPP2R5BQ15173 497 aa8.57□□□□□ -1.04
SF3B3-201ENST00000302516 ISM2Q6H9L7 571 aa8.57□□□□□ -1.04
SF3B3-201ENST00000302516 IFT81Q8WYA0 676 aa8.57□□□□□ -1.04
SF3B3-201ENST00000302516 CCDC51Q96ER9 411 aa8.57□□□□□ -1.04
SF3B3-201ENST00000302516 IRX4P78413 519 aa8.57□□□□□ -1.04
SF3B3-201ENST00000302516 BRD3Q15059 726 aa8.57□□□□□ -1.04
SF3B3-201ENST00000302516 CEP85Q6P2H3 762 aa8.57□□□□□ -1.04
SF3B3-201ENST00000302516 PLEKHM2Q8IWE5 1019 aa8.57□□□□□ -1.04
SF3B3-201ENST00000302516 NECAB1Q8N987 351 aa8.57□□□□□ -1.04
SF3B3-201ENST00000302516 CCDC63Q8NA47 563 aa8.57□□□□□ -1.04
SF3B3-201ENST00000302516 BCAP29Q9UHQ4 241 aa8.57□□□□□ -1.04
SF3B3-201ENST00000302516 ST5P78524 1137 aa8.57□□□□□ -1.04
SF3B3-201ENST00000302516 IGSF22Q8N9C0 903 aa8.57□□□□□ -1.04
SF3B3-201ENST00000302516 PTPDC1A2A3K4 754 aa8.57□□□□□ -1.04
SF3B3-201ENST00000302516 ATP2B3Q16720 1220 aa8.57□□□□□ -1.04
SF3B3-201ENST00000302516 RNF216Q9NWF9 866 aaPredicted RBP8.57□□□□□ -1.04
SF3B3-201ENST00000302516 CHPF2Q9P2E5 772 aa8.57□□□□□ -1.04
SF3B3-201ENST00000302516 PHF8Q9UPP1 1060 aa8.57□□□□□ -1.04
SF3B3-201ENST00000302516 SLC4A4Q9Y6R1 1079 aa8.57□□□□□ -1.04
SF3B3-201ENST00000302516 SPDYE3A6NKU9 549 aa8.57□□□□□ -1.04
SF3B3-201ENST00000302516 NDUFAB1O14561 156 aa8.57□□□□□ -1.04
SF3B3-201ENST00000302516 PHACTR2O75167 634 aa8.57□□□□□ -1.04
SF3B3-201ENST00000302516 DTHD1Q6ZMT9 781 aa8.57□□□□□ -1.04
SF3B3-201ENST00000302516 GTF3C6Q969F1 213 aa8.57□□□□□ -1.04
SF3B3-201ENST00000302516 PARP2Q9UGN5 583 aa8.57□□□□□ -1.04
SF3B3-201ENST00000302516 EEF2P13639 858 aaKnown RBP8.56□□□□□ -1.04
SF3B3-201ENST00000302516 DHX58Q96C10 678 aa8.56□□□□□ -1.04
SF3B3-201ENST00000302516 MAK16Q9BXY0 300 aaKnown RBP8.56□□□□□ -1.04
SF3B3-201ENST00000302516 PPFIA4O75335 1185 aa8.56□□□□□ -1.04
SF3B3-201ENST00000302516 LUC7L3O95232 432 aaKnown RBP8.56□□□□□ -1.04
SF3B3-201ENST00000302516 FAM114A2Q9NRY5 505 aa8.56□□□□□ -1.04
SF3B3-201ENST00000302516 CTNND2Q9UQB3 1225 aa8.56□□□□□ -1.04
SF3B3-201ENST00000302516 MMRN2Q9H8L6 949 aa8.56□□□□□ -1.04
SF3B3-201ENST00000302516 NPATQ14207 1427 aa8.56□□□□□ -1.04
SF3B3-201ENST00000302516 CUTAO60888 179 aa8.56□□□□□ -1.04
SF3B3-201ENST00000302516 PPFIA3O75145 1194 aa8.56□□□□□ -1.04
SF3B3-201ENST00000302516 MRPS9P82933 396 aaKnown RBP8.56□□□□□ -1.04
SF3B3-201ENST00000302516 CEP85LQ5SZL2 805 aa8.56□□□□□ -1.04
SF3B3-201ENST00000302516 ZBTB40Q9NUA8 1239 aa8.56□□□□□ -1.04
SF3B3-201ENST00000302516 CHMLP26374 656 aa8.56□□□□□ -1.04
SF3B3-201ENST00000302516 SNX16P57768 344 aa8.56□□□□□ -1.04
SF3B3-201ENST00000302516 MAP3K21Q5TCX8 1036 aa8.56□□□□□ -1.04
SF3B3-201ENST00000302516 ADGRF5Q8IZF2 1346 aa8.56□□□□□ -1.04
SF3B3-201ENST00000302516 MED4Q9NPJ6 270 aa8.56□□□□□ -1.04
SF3B3-201ENST00000302516 CASQ2O14958 399 aaPredicted RBP8.56□□□□□ -1.04
SF3B3-201ENST00000302516 CALUO43852 315 aaPredicted RBP8.56□□□□□ -1.04
SF3B3-201ENST00000302516 INF2Q27J81 1249 aa8.56□□□□□ -1.04
SF3B3-201ENST00000302516 CCDC65Q8IXS2 484 aa8.56□□□□□ -1.04
SF3B3-201ENST00000302516 MLKLQ8NB16 471 aa8.56□□□□□ -1.04
SF3B3-201ENST00000302516 ZRANB1Q9UGI0 708 aa8.56□□□□□ -1.04
SF3B3-201ENST00000302516 NEDD9Q14511 834 aa8.56□□□□□ -1.04
SF3B3-201ENST00000302516 I3L4J1 428 aa8.55□□□□□ -1.04
SF3B3-201ENST00000302516 RPS6KB1P23443 525 aa8.55□□□□□ -1.04
SF3B3-201ENST00000302516 TSHZ3Q63HK5 1081 aa8.55□□□□□ -1.04
SF3B3-201ENST00000302516 TPD52P55327 224 aaPredicted RBP8.55□□□□□ -1.04
SF3B3-201ENST00000302516 SARNPP82979 210 aaKnown RBP8.55□□□□□ -1.04
SF3B3-201ENST00000302516 STK10O94804 968 aaKnown RBP8.55□□□□□ -1.04
SF3B3-201ENST00000302516 MEIS3Q99687 375 aa8.55□□□□□ -1.04
SF3B3-201ENST00000302516 MAGEB6P1A0A0J9YX57 407 aa8.55□□□□□ -1.04
SF3B3-201ENST00000302516 PTCD1O75127 700 aaKnown RBP8.55□□□□□ -1.04
SF3B3-201ENST00000302516 PSMC4P43686 418 aa8.55□□□□□ -1.04
SF3B3-201ENST00000302516 CLNS1AP54105 237 aaKnown RBP8.55□□□□□ -1.04
SF3B3-201ENST00000302516 SMC1BQ8NDV3 1235 aa8.55□□□□□ -1.04
SF3B3-201ENST00000302516 LZTS2Q9BRK4 669 aa8.55□□□□□ -1.04
SF3B3-201ENST00000302516 KCNK9Q9NPC2 374 aa8.55□□□□□ -1.04
SF3B3-201ENST00000302516 FAM135BQ49AJ0 1406 aa8.55□□□□□ -1.04
SF3B3-201ENST00000302516 A2MP01023 1474 aa8.55□□□□□ -1.04
SF3B3-201ENST00000302516 CFAP221Q4G0U5 840 aa8.55□□□□□ -1.04
SF3B3-201ENST00000302516 LIN9Q5TKA1 542 aa8.55□□□□□ -1.04
SF3B3-201ENST00000302516 NAA16Q6N069 864 aaPredicted RBP8.55□□□□□ -1.04
SF3B3-201ENST00000302516 SV2BQ7L1I2 683 aa8.55□□□□□ -1.04
SF3B3-201ENST00000302516 TMEM87BQ96K49 555 aa8.55□□□□□ -1.04
SF3B3-201ENST00000302516 FEZ2Q9UHY8 353 aaPredicted RBP8.55□□□□□ -1.04
SF3B3-201ENST00000302516 DEXIO95424 95 aa8.55□□□□□ -1.04
SF3B3-201ENST00000302516 PCK1P35558 622 aa8.55□□□□□ -1.04
SF3B3-201ENST00000302516 TRAF3IP1Q8TDR0 691 aaPredicted RBP8.55□□□□□ -1.04
SF3B3-201ENST00000302516 SECISBP2LQ93073 1101 aaKnown RBP8.55□□□□□ -1.04
SF3B3-201ENST00000302516 NCBP1Q09161 790 aaKnown RBP8.55□□□□□ -1.04
SF3B3-201ENST00000302516 MCUR1Q96AQ8 359 aa8.55□□□□□ -1.04
SF3B3-201ENST00000302516 LARP6Q9BRS8 491 aaKnown RBP8.55□□□□□ -1.04
SF3B3-201ENST00000302516 NYXQ9GZU5 481 aa8.55□□□□□ -1.04
SF3B3-201ENST00000302516 KDM5CP41229 1560 aa8.54□□□□□ -1.04
SF3B3-201ENST00000302516 SLC8A1P32418 973 aa8.54□□□□□ -1.04
SF3B3-201ENST00000302516 NLRP12P59046 1061 aa8.54□□□□□ -1.04
SF3B3-201ENST00000302516 KARSQ15046 597 aaKnown RBP8.54□□□□□ -1.04
SF3B3-201ENST00000302516 STX8Q9UNK0 236 aa8.54□□□□□ -1.04
SF3B3-201ENST00000302516 WHAMMP3Q1A5X7 153 aa8.54□□□□□ -1.04
SF3B3-201ENST00000302516 HAUS3Q68CZ6 603 aa8.54□□□□□ -1.04
SF3B3-201ENST00000302516 SMARCC2Q8TAQ2 1214 aa8.54□□□□□ -1.04
SF3B3-201ENST00000302516 RAB17Q9H0T7 212 aa8.54□□□□□ -1.04
SF3B3-201ENST00000302516 HAUS2Q9NVX0 235 aa8.54□□□□□ -1.04
SF3B3-201ENST00000302516 ARHGEF5Q12774 1597 aa8.54□□□□□ -1.04
SF3B3-201ENST00000302516 AKAP4Q5JQC9 854 aa8.54□□□□□ -1.04
SF3B3-201ENST00000302516 SRGAP1Q7Z6B7 1085 aa8.54□□□□□ -1.04
SF3B3-201ENST00000302516 LINS1Q8NG48 757 aa8.54□□□□□ -1.04
SF3B3-201ENST00000302516 CYP7A1P22680 504 aa8.54□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms