RNA–Protein interactions for RNA: ENST00000302303.5

RFX3-201, Transcript of regulatory factor X3, humanhuman

TSL 1 (best) BASIC

Gene RFX3, Length 1,522 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3-201ENST00000302303 SPDYE2BA6NHP3 402 aa11.44□□□□□ -0.58
RFX3-201ENST00000302303 WNT10BO00744 389 aa11.44□□□□□ -0.58
RFX3-201ENST00000302303 PRKAB2O43741 272 aa11.44□□□□□ -0.58
RFX3-201ENST00000302303 SPDYE6P0CI01 402 aa11.44□□□□□ -0.58
RFX3-201ENST00000302303 BTDP43251 543 aa11.44□□□□□ -0.58
RFX3-201ENST00000302303 NBPF9Q3BBW0 867 aa11.44□□□□□ -0.58
RFX3-201ENST00000302303 VPS53Q5VIR6 699 aa11.44□□□□□ -0.58
RFX3-201ENST00000302303 CDC42EP5Q6NZY7 148 aa11.44□□□□□ -0.58
RFX3-201ENST00000302303 TRPM4Q8TD43 1214 aa11.44□□□□□ -0.58
RFX3-201ENST00000302303 TEKT1Q969V4 418 aa11.44□□□□□ -0.58
RFX3-201ENST00000302303 ARMT1Q9H993 441 aa11.44□□□□□ -0.58
RFX3-201ENST00000302303 MYOZ2Q9NPC6 264 aa11.44□□□□□ -0.58
RFX3-201ENST00000302303 AATFQ9NY61 560 aaKnown RBP eCLIP11.44□□□□□ -0.58
RFX3-201ENST00000302303 WDR90Q96KV7 1748 aa11.43□□□□□ -0.58
RFX3-201ENST00000302303 ASTN2O75129 1339 aaPredicted RBP11.43□□□□□ -0.58
RFX3-201ENST00000302303 HIP1O00291 1037 aa11.43□□□□□ -0.58
RFX3-201ENST00000302303 GPAA1O43292 621 aa11.43□□□□□ -0.58
RFX3-201ENST00000302303 MBD4O95243 580 aa11.43□□□□□ -0.58
RFX3-201ENST00000302303 LDHCP07864 332 aa11.43□□□□□ -0.58
RFX3-201ENST00000302303 MMP14P50281 582 aa11.43□□□□□ -0.58
RFX3-201ENST00000302303 GSTO1P78417 241 aa11.43□□□□□ -0.58
RFX3-201ENST00000302303 PTH1RQ03431 593 aa11.43□□□□□ -0.58
RFX3-201ENST00000302303 DPY19L2Q6NUT2 758 aa11.43□□□□□ -0.58
RFX3-201ENST00000302303 SH3RF3Q8TEJ3 882 aaPredicted RBP11.43□□□□□ -0.58
RFX3-201ENST00000302303 DIAPH3Q9NSV4 1193 aa11.43□□□□□ -0.58
RFX3-201ENST00000302303 MAGEB6P1A0A0J9YX57 407 aa11.42□□□□□ -0.58
RFX3-201ENST00000302303 GSG1L2A8MUP6 293 aa11.42□□□□□ -0.58
RFX3-201ENST00000302303 WDHD1O75717 1129 aaPredicted RBP11.42□□□□□ -0.58
RFX3-201ENST00000302303 TBC1D10BQ4KMP7 808 aaPredicted RBP11.42□□□□□ -0.58
RFX3-201ENST00000302303 OGFOD1Q8N543 542 aa11.42□□□□□ -0.58
RFX3-201ENST00000302303 LSG1Q9H089 658 aaKnown RBP11.42□□□□□ -0.58
RFX3-201ENST00000302303 TDRD3Q9H7E2 651 aaKnown RBP11.42□□□□□ -0.58
RFX3-201ENST00000302303 EPB41L4AQ9HCS5 686 aaPredicted RBP11.42□□□□□ -0.58
RFX3-201ENST00000302303 DDX4Q9NQI0 724 aaKnown RBP11.42□□□□□ -0.58
RFX3-201ENST00000302303 DCAF8L1A6NGE4 600 aa11.41□□□□□ -0.58
RFX3-201ENST00000302303 NFIAQ12857 509 aa11.41□□□□□ -0.58
RFX3-201ENST00000302303 DLGAP5Q15398 846 aa11.41□□□□□ -0.58
RFX3-201ENST00000302303 LRRFIP1Q32MZ4 808 aaKnown RBP11.41□□□□□ -0.58
RFX3-201ENST00000302303 BACH2Q9BYV9 841 aa11.41□□□□□ -0.58
RFX3-201ENST00000302303 FAM198AQ9UFP1 575 aa11.41□□□□□ -0.58
RFX3-201ENST00000302303 PGAP2Q9UHJ9 254 aa11.41□□□□□ -0.58
RFX3-201ENST00000302303 HDAC9Q9UKV0 1011 aa11.41□□□□□ -0.58
RFX3-201ENST00000302303 CCDC171Q6TFL3 1326 aa11.41□□□□□ -0.58
RFX3-201ENST00000302303 RAD50Q92878 1312 aa11.41□□□□□ -0.58
RFX3-201ENST00000302303 H7C1D1 291 aa11.4□□□□□ -0.58
RFX3-201ENST00000302303 SMIM22K7EJ46 135 aa11.4□□□□□ -0.58
RFX3-201ENST00000302303 HSPD1P10809 573 aaKnown RBP11.4□□□□□ -0.58
RFX3-201ENST00000302303 CACNB3P54284 484 aa11.4□□□□□ -0.58
RFX3-201ENST00000302303 EVX2Q03828 476 aa11.4□□□□□ -0.58
RFX3-201ENST00000302303 KIF4BQ2VIQ3 1234 aa11.4□□□□□ -0.58
RFX3-201ENST00000302303 SPDYE2Q495Y8 402 aa11.4□□□□□ -0.58
RFX3-201ENST00000302303 RBM26Q5T8P6 1007 aaKnown RBP11.4□□□□□ -0.58
RFX3-201ENST00000302303 ZFPM1Q8IX07 1006 aa11.4□□□□□ -0.58
RFX3-201ENST00000302303 SLF2Q8IX21 1173 aa11.4□□□□□ -0.58
RFX3-201ENST00000302303 SDR42E1Q8WUS8 393 aa11.4□□□□□ -0.58
RFX3-201ENST00000302303 IDI2Q9BXS1 227 aa11.4□□□□□ -0.58
RFX3-201ENST00000302303 TAF1DQ9H5J8 278 aaPredicted RBP11.4□□□□□ -0.58
RFX3-201ENST00000302303 ADARB2Q9NS39 739 aaKnown RBP11.4□□□□□ -0.58
RFX3-201ENST00000302303 USP40Q9NVE5 1235 aa11.4□□□□□ -0.58
RFX3-201ENST00000302303 ZNF70Q9UC06 446 aaPredicted RBP11.4□□□□□ -0.58
RFX3-201ENST00000302303 CNTNAP1P78357 1384 aa11.4□□□□□ -0.59
RFX3-201ENST00000302303 RPAP1Q9BWH6 1393 aaPredicted RBP11.4□□□□□ -0.59
RFX3-201ENST00000302303 PATL2C9JE40 543 aaKnown RBP11.4□□□□□ -0.59
RFX3-201ENST00000302303 POTEIP0CG38 1075 aa11.4□□□□□ -0.59
RFX3-201ENST00000302303 POTEJP0CG39 1038 aa11.4□□□□□ -0.59
RFX3-201ENST00000302303 RBM5P52756 815 aaKnown RBP eCLIP11.4□□□□□ -0.59
RFX3-201ENST00000302303 MAP4K1Q92918 833 aa11.4□□□□□ -0.59
RFX3-201ENST00000302303 AIDAQ96BJ3 306 aa11.4□□□□□ -0.59
RFX3-201ENST00000302303 NMRK2Q9NPI5 230 aa11.4□□□□□ -0.59
RFX3-201ENST00000302303 DCP1AQ9NPI6 582 aaPredicted RBP11.4□□□□□ -0.59
RFX3-201ENST00000302303 HACL1Q9UJ83 578 aa11.4□□□□□ -0.59
RFX3-201ENST00000302303 CDK5RAP2Q96SN8 1893 aa11.39□□□□□ -0.59
RFX3-201ENST00000302303 CLRN2A0PK11 232 aa11.39□□□□□ -0.59
RFX3-201ENST00000302303 BAG3O95817 575 aa11.39□□□□□ -0.59
RFX3-201ENST00000302303 FGAP02671 866 aa11.39□□□□□ -0.59
RFX3-201ENST00000302303 EPHX2P34913 555 aa11.39□□□□□ -0.59
RFX3-201ENST00000302303 ALX1Q15699 326 aa11.39□□□□□ -0.59
RFX3-201ENST00000302303 SH3BP5LQ7L8J4 393 aa11.39□□□□□ -0.59
RFX3-201ENST00000302303 TGFBRAP1Q8WUH2 860 aa11.39□□□□□ -0.59
RFX3-201ENST00000302303 RUFY2Q8WXA3 655 aa11.39□□□□□ -0.59
RFX3-201ENST00000302303 DSCC1Q9BVC3 393 aa11.39□□□□□ -0.59
RFX3-201ENST00000302303 USP26Q9BXU7 913 aa11.39□□□□□ -0.59
RFX3-201ENST00000302303 RRAGCQ9HB90 399 aa11.39□□□□□ -0.59
RFX3-201ENST00000302303 SCAF8Q9UPN6 1271 aaKnown RBP11.39□□□□□ -0.59
RFX3-201ENST00000302303 TACC3Q9Y6A5 838 aa11.39□□□□□ -0.59
RFX3-201ENST00000302303 SLC4A4Q9Y6R1 1079 aa11.39□□□□□ -0.59
RFX3-201ENST00000302303 SCN4AP35499 1836 aa11.38□□□□□ -0.59
RFX3-201ENST00000302303 NECTIN1Q15223 517 aa11.38□□□□□ -0.59
RFX3-201ENST00000302303 USP50Q70EL3 339 aaPredicted RBP11.38□□□□□ -0.59
RFX3-201ENST00000302303 CDAN1Q8IWY9 1227 aa11.38□□□□□ -0.59
RFX3-201ENST00000302303 TEX11Q8IYF3 940 aa11.38□□□□□ -0.59
RFX3-201ENST00000302303 IFNL3Q8IZI9 196 aa11.38□□□□□ -0.59
RFX3-201ENST00000302303 TAF6LQ9Y6J9 622 aa11.38□□□□□ -0.59
RFX3-201ENST00000302303 FLT1P17948 1338 aa11.38□□□□□ -0.59
RFX3-201ENST00000302303 FOCADQ5VW36 1801 aa11.37□□□□□ -0.59
RFX3-201ENST00000302303 ECM29Q5VYK3 1845 aa11.37□□□□□ -0.59
RFX3-201ENST00000302303 SLURP2P0DP57 97 aa11.37□□□□□ -0.59
RFX3-201ENST00000302303 PLCG2P16885 1265 aa11.37□□□□□ -0.59
RFX3-201ENST00000302303 DDX60LQ5H9U9 1706 aaKnown RBP11.37□□□□□ -0.59
RFX3-201ENST00000302303 FKBP1CQ5VVH2 108 aa11.37□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 55.1 ms