RNA–Protein interactions for RNA: ENST00000298260.8

SKA3-201, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 2,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-201ENST00000298260 IKBKBO14920 756 aa15.44■□□□□ 0.06
SKA3-201ENST00000298260 KIF4BQ2VIQ3 1234 aa15.44■□□□□ 0.06
SKA3-201ENST00000298260 LMOD2Q6P5Q4 547 aa15.44■□□□□ 0.06
SKA3-201ENST00000298260 SYNE3Q6ZMZ3 975 aa15.44■□□□□ 0.06
SKA3-201ENST00000298260 LLPHQ9BRT6 129 aaKnown RBP15.44■□□□□ 0.06
SKA3-201ENST00000298260 PCDHA5Q9Y5H7 936 aa15.44■□□□□ 0.06
SKA3-201ENST00000298260 HSP90B2PQ58FF3 399 aa15.44■□□□□ 0.06
SKA3-201ENST00000298260 TTC19Q6DKK2 380 aaPredicted RBP15.44■□□□□ 0.06
SKA3-201ENST00000298260 GRAMD1CQ8IYS0 662 aa15.44■□□□□ 0.06
SKA3-201ENST00000298260 DBNDD2Q9BQY9 259 aa15.44■□□□□ 0.06
SKA3-201ENST00000298260 GNL3Q9BVP2 549 aaKnown RBP eCLIP15.44■□□□□ 0.06
SKA3-201ENST00000298260 SAMSN1Q9NSI8 373 aaKnown RBP15.44■□□□□ 0.06
SKA3-201ENST00000298260 RGPD1P0DJD0 1748 aa15.44■□□□□ 0.06
SKA3-201ENST00000298260 TEX33O43247 280 aa15.44■□□□□ 0.06
SKA3-201ENST00000298260 COBLO75128 1261 aa15.44■□□□□ 0.06
SKA3-201ENST00000298260 RNF40O75150 1001 aa15.44■□□□□ 0.06
SKA3-201ENST00000298260 TFCP2Q12800 502 aa15.44■□□□□ 0.06
SKA3-201ENST00000298260 NCAPH2Q6IBW4 605 aa15.44■□□□□ 0.06
SKA3-201ENST00000298260 SHC4Q6S5L8 630 aa15.44■□□□□ 0.06
SKA3-201ENST00000298260 METTL16Q86W50 562 aaKnown RBP15.44■□□□□ 0.06
SKA3-201ENST00000298260 GSPT2Q8IYD1 628 aaKnown RBP15.44■□□□□ 0.06
SKA3-201ENST00000298260 TEX13AQ9BXU3 409 aaPredicted RBP15.44■□□□□ 0.06
SKA3-201ENST00000298260 MON2Q7Z3U7 1717 aa15.43■□□□□ 0.06
SKA3-201ENST00000298260 RGPD8O14715 1765 aaPredicted RBP15.43■□□□□ 0.06
SKA3-201ENST00000298260 CBFA2T2O43439 604 aa15.43■□□□□ 0.06
SKA3-201ENST00000298260 RXRAP19793 462 aa15.43■□□□□ 0.06
SKA3-201ENST00000298260 ESCO1Q5FWF5 840 aa15.43■□□□□ 0.06
SKA3-201ENST00000298260 ANO1Q5XXA6 986 aa15.43■□□□□ 0.06
SKA3-201ENST00000298260 MPRIPQ6WCQ1 1025 aa15.43■□□□□ 0.06
SKA3-201ENST00000298260 PROSER2Q86WR7 435 aaPredicted RBP15.43■□□□□ 0.06
SKA3-201ENST00000298260 KCNG4Q8TDN1 519 aa15.43■□□□□ 0.06
SKA3-201ENST00000298260 FAM212AQ96EL1 285 aa15.43■□□□□ 0.06
SKA3-201ENST00000298260 ORAI2Q96SN7 254 aa15.43■□□□□ 0.06
SKA3-201ENST00000298260 U3KPZ7 1027 aaPredicted RBP15.43■□□□□ 0.06
SKA3-201ENST00000298260 KDRP35968 1356 aa15.43■□□□□ 0.06
SKA3-201ENST00000298260 ABCC6O95255 1503 aa15.43■□□□□ 0.06
SKA3-201ENST00000298260 E7EWF7 191 aa15.43■□□□□ 0.06
SKA3-201ENST00000298260 APPP05067 770 aa15.43■□□□□ 0.06
SKA3-201ENST00000298260 IBSPP21815 317 aaPredicted RBP15.43■□□□□ 0.06
SKA3-201ENST00000298260 MCMDC2Q4G0Z9 681 aa15.43■□□□□ 0.06
SKA3-201ENST00000298260 BRMS1Q9HCU9 246 aa15.43■□□□□ 0.06
SKA3-201ENST00000298260 UBE2Q2LH0YL09 131 aa15.42■□□□□ 0.06
SKA3-201ENST00000298260 STX10O60499 249 aa15.42■□□□□ 0.06
SKA3-201ENST00000298260 TBX2Q13207 712 aaPredicted RBP15.42■□□□□ 0.06
SKA3-201ENST00000298260 DHX8Q14562 1220 aaKnown RBP15.42■□□□□ 0.06
SKA3-201ENST00000298260 SLC35F6Q8N357 371 aa15.42■□□□□ 0.06
SKA3-201ENST00000298260 ACRBPQ8NEB7 543 aa15.42■□□□□ 0.06
SKA3-201ENST00000298260 POLD4Q9HCU8 107 aa15.42■□□□□ 0.06
SKA3-201ENST00000298260 NFE2L3Q9Y4A8 694 aa15.42■□□□□ 0.06
SKA3-201ENST00000298260 TECPR2O15040 1411 aa15.42■□□□□ 0.06
SKA3-201ENST00000298260 JCADQ9P266 1359 aa15.42■□□□□ 0.06
SKA3-201ENST00000298260 GRM8O00222 908 aa15.42■□□□□ 0.06
SKA3-201ENST00000298260 A1BGP04217 495 aa15.42■□□□□ 0.06
SKA3-201ENST00000298260 PIP4K2AP48426 406 aaPredicted RBP15.42■□□□□ 0.06
SKA3-201ENST00000298260 EXOSC10Q01780 885 aaKnown RBP15.42■□□□□ 0.06
SKA3-201ENST00000298260 TADA2BQ86TJ2 420 aa15.42■□□□□ 0.06
SKA3-201ENST00000298260 FLT4P35916 1363 aa15.41■□□□□ 0.06
SKA3-201ENST00000298260 EIF3JO75822 258 aaKnown RBP15.41■□□□□ 0.06
SKA3-201ENST00000298260 CCT5P48643 541 aa15.41■□□□□ 0.06
SKA3-201ENST00000298260 AKAP17AQ02040 695 aaKnown RBP15.41■□□□□ 0.06
SKA3-201ENST00000298260 HSP90AB3PQ58FF7 597 aa15.41■□□□□ 0.06
SKA3-201ENST00000298260 SPECC1LQ69YQ0 1117 aa15.41■□□□□ 0.06
SKA3-201ENST00000298260 CDC23Q9UJX2 597 aa15.41■□□□□ 0.06
SKA3-201ENST00000298260 GOLIM4O00461 696 aa15.41■□□□□ 0.06
SKA3-201ENST00000298260 EXOC5O00471 708 aa15.41■□□□□ 0.06
SKA3-201ENST00000298260 FCHSD1Q86WN1 690 aa15.41■□□□□ 0.06
SKA3-201ENST00000298260 MED15Q96RN5 788 aa15.41■□□□□ 0.06
SKA3-201ENST00000298260 POLR3EQ9NVU0 708 aa15.41■□□□□ 0.06
SKA3-201ENST00000298260 CMA1P23946 247 aa15.4■□□□□ 0.06
SKA3-201ENST00000298260 MNAT1P51948 309 aa15.4■□□□□ 0.06
SKA3-201ENST00000298260 DNAJC21Q5F1R6 531 aaKnown RBP15.4■□□□□ 0.06
SKA3-201ENST00000298260 OLFM4Q6UX06 510 aa15.4■□□□□ 0.06
SKA3-201ENST00000298260 TUBE1Q9UJT0 475 aa15.4■□□□□ 0.06
SKA3-201ENST00000298260 RAB21Q9UL25 225 aa15.4■□□□□ 0.06
SKA3-201ENST00000298260 SYF2O95926 243 aaKnown RBP15.4■□□□□ 0.06
SKA3-201ENST00000298260 CCDC175P0C221 793 aa15.4■□□□□ 0.06
SKA3-201ENST00000298260 MMS22LQ6ZRQ5 1243 aa15.4■□□□□ 0.06
SKA3-201ENST00000298260 HNRNPLLQ8WVV9 542 aaKnown RBP15.4■□□□□ 0.06
SKA3-201ENST00000298260 TFR2Q9UP52 801 aa15.4■□□□□ 0.06
SKA3-201ENST00000298260 ADGRG1Q9Y653 693 aa15.4■□□□□ 0.06
SKA3-201ENST00000298260 ERLIN1O75477 346 aa15.39■□□□□ 0.06
SKA3-201ENST00000298260 RPS6KA5O75582 802 aa15.39■□□□□ 0.06
SKA3-201ENST00000298260 USP5P45974 858 aa15.39■□□□□ 0.06
SKA3-201ENST00000298260 NLRP6P59044 892 aa15.39■□□□□ 0.06
SKA3-201ENST00000298260 ATL3Q6DD88 541 aa15.39■□□□□ 0.06
SKA3-201ENST00000298260 IGSF22Q8N9C0 903 aa15.39■□□□□ 0.06
SKA3-201ENST00000298260 CXorf56Q9H5V9 222 aa15.39■□□□□ 0.06
SKA3-201ENST00000298260 BTBD11A6QL63 1104 aa15.39■□□□□ 0.05
SKA3-201ENST00000298260 ENC1O14682 589 aa15.39■□□□□ 0.05
SKA3-201ENST00000298260 PPFIA4O75335 1185 aa15.39■□□□□ 0.05
SKA3-201ENST00000298260 YEATS4O95619 227 aa15.39■□□□□ 0.05
SKA3-201ENST00000298260 STX17P56962 302 aa15.39■□□□□ 0.05
SKA3-201ENST00000298260 GRIN1Q05586 938 aa15.39■□□□□ 0.05
SKA3-201ENST00000298260 RBL2Q08999 1139 aa15.39■□□□□ 0.05
SKA3-201ENST00000298260 MCTP2Q6DN12 878 aa15.39■□□□□ 0.05
SKA3-201ENST00000298260 MSANTD4Q8NCY6 345 aa15.39■□□□□ 0.05
SKA3-201ENST00000298260 C19orf44Q9H6X5 657 aa15.39■□□□□ 0.05
SKA3-201ENST00000298260 SEC31BQ9NQW1 1179 aa15.39■□□□□ 0.05
SKA3-201ENST00000298260 DENND2AQ9ULE3 1009 aa15.39■□□□□ 0.05
SKA3-201ENST00000298260 PPARDQ03181 441 aa15.39■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms