RNA–Protein interactions for RNA: ENST00000274071.6

PDGFC-201, Transcript of platelet derived growth factor C, humanhuman

TSL 1 (best)

Gene PDGFC, Length 2,987 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFC-201ENST00000274071 BATF3Q9NR55 127 aa10.5□□□□□ -0.73
PDGFC-201ENST00000274071 MYO6Q9UM54 1294 aa10.5□□□□□ -0.73
PDGFC-201ENST00000274071 ELL2O00472 640 aaPredicted RBP10.49□□□□□ -0.73
PDGFC-201ENST00000274071 PYGBP11216 843 aa10.49□□□□□ -0.73
PDGFC-201ENST00000274071 PPFIA1Q13136 1202 aa10.49□□□□□ -0.73
PDGFC-201ENST00000274071 CCDC13Q8IYE1 715 aa10.49□□□□□ -0.73
PDGFC-201ENST00000274071 NECAB1Q8N987 351 aa10.49□□□□□ -0.73
PDGFC-201ENST00000274071 STK31Q9BXU1 1019 aa10.49□□□□□ -0.73
PDGFC-201ENST00000274071 SETD1BQ9UPS6 1966 aaKnown RBP10.49□□□□□ -0.73
PDGFC-201ENST00000274071 EPB41L2O43491 1005 aaKnown RBP10.49□□□□□ -0.73
PDGFC-201ENST00000274071 CDKL5O76039 1030 aa10.49□□□□□ -0.73
PDGFC-201ENST00000274071 LTKP29376 864 aa10.49□□□□□ -0.73
PDGFC-201ENST00000274071 GGCXP38435 758 aa10.49□□□□□ -0.73
PDGFC-201ENST00000274071 GNGT1P63211 74 aa10.49□□□□□ -0.73
PDGFC-201ENST00000274071 LAMB3Q13751 1172 aa10.49□□□□□ -0.73
PDGFC-201ENST00000274071 CAPRIN2Q6IMN6 1127 aaKnown RBP10.49□□□□□ -0.73
PDGFC-201ENST00000274071 TMEM139Q8IV31 216 aa10.49□□□□□ -0.73
PDGFC-201ENST00000274071 SLC39A2Q9NP94 309 aa10.49□□□□□ -0.73
PDGFC-201ENST00000274071 BLOC1S6Q9UL45 172 aa10.49□□□□□ -0.73
PDGFC-201ENST00000274071 HPCAL4Q9UM19 191 aa10.49□□□□□ -0.73
PDGFC-201ENST00000274071 TBC1D2BQ9UPU7 963 aa10.49□□□□□ -0.73
PDGFC-201ENST00000274071 GOLGA6L9A6NEM1 432 aa10.48□□□□□ -0.73
PDGFC-201ENST00000274071 ARHGAP6O43182 974 aa10.48□□□□□ -0.73
PDGFC-201ENST00000274071 SETSIPP0DME0 302 aa10.48□□□□□ -0.73
PDGFC-201ENST00000274071 YTHDF3Q7Z739 585 aaKnown RBP10.48□□□□□ -0.73
PDGFC-201ENST00000274071 UNC5CLQ8IV45 518 aa10.48□□□□□ -0.73
PDGFC-201ENST00000274071 RSRC1Q96IZ7 334 aaKnown RBP10.48□□□□□ -0.73
PDGFC-201ENST00000274071 SCLT1Q96NL6 688 aa10.48□□□□□ -0.73
PDGFC-201ENST00000274071 GOPCQ9HD26 462 aa10.48□□□□□ -0.73
PDGFC-201ENST00000274071 CDC23Q9UJX2 597 aa10.48□□□□□ -0.73
PDGFC-201ENST00000274071 NDUFAB1O14561 156 aa10.48□□□□□ -0.73
PDGFC-201ENST00000274071 IMPDH2P12268 514 aa10.48□□□□□ -0.73
PDGFC-201ENST00000274071 ME3Q16798 604 aa10.48□□□□□ -0.73
PDGFC-201ENST00000274071 CCDC181Q5TID7 509 aa10.48□□□□□ -0.73
PDGFC-201ENST00000274071 MIS18BP1Q6P0N0 1132 aa10.48□□□□□ -0.73
PDGFC-201ENST00000274071 FAM163AQ96GL9 167 aaPredicted RBP10.48□□□□□ -0.73
PDGFC-201ENST00000274071 GOLGA6CA6NDK9 693 aa10.47□□□□□ -0.73
PDGFC-201ENST00000274071 AGPSO00116 658 aa10.47□□□□□ -0.73
PDGFC-201ENST00000274071 TFRCP02786 760 aaKnown RBP10.47□□□□□ -0.73
PDGFC-201ENST00000274071 GOLGA6DP0CG33 693 aa10.47□□□□□ -0.73
PDGFC-201ENST00000274071 ACCSLQ4AC99 568 aa10.47□□□□□ -0.73
PDGFC-201ENST00000274071 FILIP1LQ4L180 1135 aa10.47□□□□□ -0.73
PDGFC-201ENST00000274071 PRPF40BQ6NWY9 871 aaKnown RBP10.47□□□□□ -0.73
PDGFC-201ENST00000274071 CYB5D1Q6P9G0 228 aa10.47□□□□□ -0.73
PDGFC-201ENST00000274071 API5Q9BZZ5 524 aaKnown RBP10.47□□□□□ -0.73
PDGFC-201ENST00000274071 GOLGA6AQ9NYA3 693 aa10.47□□□□□ -0.73
PDGFC-201ENST00000274071 TPX2Q9ULW0 747 aaKnown RBP10.47□□□□□ -0.73
PDGFC-201ENST00000274071 SSBP05455 408 aaKnown RBP eCLIP10.47□□□□□ -0.73
PDGFC-201ENST00000274071 TUBB4BP68371 445 aa10.47□□□□□ -0.73
PDGFC-201ENST00000274071 PLCB4Q15147 1175 aa10.47□□□□□ -0.73
PDGFC-201ENST00000274071 KRT24Q2M2I5 525 aa10.47□□□□□ -0.73
PDGFC-201ENST00000274071 HSP90AB2PQ58FF8 381 aa10.47□□□□□ -0.73
PDGFC-201ENST00000274071 TOGARAM2Q6ZUX3 1019 aa10.47□□□□□ -0.73
PDGFC-201ENST00000274071 SPATA21Q7Z572 469 aa10.47□□□□□ -0.73
PDGFC-201ENST00000274071 SPATS2Q86XZ4 545 aaKnown RBP10.47□□□□□ -0.73
PDGFC-201ENST00000274071 CCDC50Q8IVM0 306 aa10.47□□□□□ -0.73
PDGFC-201ENST00000274071 FUKQ8N0W3 1084 aa10.47□□□□□ -0.73
PDGFC-201ENST00000274071 NUDT16Q96DE0 195 aaKnown RBP10.47□□□□□ -0.73
PDGFC-201ENST00000274071 FMNL2Q96PY5 1086 aa10.47□□□□□ -0.73
PDGFC-201ENST00000274071 EPAS1Q99814 870 aa10.47□□□□□ -0.73
PDGFC-201ENST00000274071 TSGA10Q9BZW7 698 aa10.47□□□□□ -0.73
PDGFC-201ENST00000274071 MAF1Q9H063 256 aa10.47□□□□□ -0.73
PDGFC-201ENST00000274071 BIN2Q9UBW5 565 aaPredicted RBP10.47□□□□□ -0.73
PDGFC-201ENST00000274071 PCDHGC5Q9Y5F6 944 aa10.47□□□□□ -0.73
PDGFC-201ENST00000274071 ZSCAN9O15535 394 aaPredicted RBP10.47□□□□□ -0.73
PDGFC-201ENST00000274071 FESP07332 822 aa10.47□□□□□ -0.73
PDGFC-201ENST00000274071 TUBBP07437 444 aa10.47□□□□□ -0.73
PDGFC-201ENST00000274071 RANBP1P43487 201 aa10.47□□□□□ -0.73
PDGFC-201ENST00000274071 BZW1Q7L1Q6 419 aaKnown RBP10.47□□□□□ -0.73
PDGFC-201ENST00000274071 ZSCAN31Q96LW9 406 aaPredicted RBP10.47□□□□□ -0.73
PDGFC-201ENST00000274071 PLEKHG4BQ96PX9 1271 aa10.47□□□□□ -0.73
PDGFC-201ENST00000274071 SH2B1Q9NRF2 756 aaPredicted RBP10.47□□□□□ -0.73
PDGFC-201ENST00000274071 ANKRD26Q9UPS8 1709 aa10.46□□□□□ -0.73
PDGFC-201ENST00000274071 SALL3Q9BXA9 1300 aa10.46□□□□□ -0.73
PDGFC-201ENST00000274071 ATP7BP35670 1465 aa10.46□□□□□ -0.73
PDGFC-201ENST00000274071 SPDYE3A6NKU9 549 aa10.46□□□□□ -0.73
PDGFC-201ENST00000274071 SF3B2Q13435 895 aaKnown RBP10.46□□□□□ -0.73
PDGFC-201ENST00000274071 KARSQ15046 597 aaKnown RBP10.46□□□□□ -0.73
PDGFC-201ENST00000274071 WDR93Q6P2C0 686 aa10.46□□□□□ -0.73
PDGFC-201ENST00000274071 MYLK4Q86YV6 388 aaPredicted RBP10.46□□□□□ -0.73
PDGFC-201ENST00000274071 B4GALNT2Q8NHY0 566 aa10.46□□□□□ -0.73
PDGFC-201ENST00000274071 HOOK2Q96ED9 719 aa10.46□□□□□ -0.73
PDGFC-201ENST00000274071 CCDC97Q96F63 343 aaPredicted RBP10.46□□□□□ -0.73
PDGFC-201ENST00000274071 SH3GL2Q99962 352 aa10.46□□□□□ -0.73
PDGFC-201ENST00000274071 LRRCC1Q9C099 1032 aa10.46□□□□□ -0.73
PDGFC-201ENST00000274071 YIPF3Q9GZM5 350 aa10.46□□□□□ -0.73
PDGFC-201ENST00000274071 EID1Q9Y6B2 187 aa10.46□□□□□ -0.73
PDGFC-201ENST00000274071 TECPR2O15040 1411 aa10.46□□□□□ -0.73
PDGFC-201ENST00000274071 NCKAP5LQ9HCH0 1330 aa10.46□□□□□ -0.74
PDGFC-201ENST00000274071 H7C1W4 665 aa10.46□□□□□ -0.74
PDGFC-201ENST00000274071 SLC4A2P04920 1241 aa10.46□□□□□ -0.74
PDGFC-201ENST00000274071 SLC8A1P32418 973 aa10.46□□□□□ -0.74
PDGFC-201ENST00000274071 STIM1Q13586 685 aa10.46□□□□□ -0.74
PDGFC-201ENST00000274071 DPCR1Q3MIW9 517 aa10.46□□□□□ -0.74
PDGFC-201ENST00000274071 RNF187Q5TA31 235 aaPredicted RBP10.46□□□□□ -0.74
PDGFC-201ENST00000274071 SLC30A9Q6PML9 568 aa10.46□□□□□ -0.74
PDGFC-201ENST00000274071 CCAR1Q8IX12 1150 aaKnown RBP10.46□□□□□ -0.74
PDGFC-201ENST00000274071 NUP133Q8WUM0 1156 aa10.46□□□□□ -0.74
PDGFC-201ENST00000274071 MMTAG2Q9BU76 263 aaKnown RBP10.46□□□□□ -0.74
PDGFC-201ENST00000274071 GOLPH3LQ9H4A5 285 aa10.46□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 9.9 ms