RNA–Protein interactions for RNA: ENST00000265745.13

VPS41-201, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 2

Gene VPS41, Length 769 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-201ENST00000265745 GNAI3P08754 354 aa12.1□□□□□ -0.47
VPS41-201ENST00000265745 TRIM27P14373 513 aa12.1□□□□□ -0.47
VPS41-201ENST00000265745 TNNI2P48788 182 aa12.1□□□□□ -0.47
VPS41-201ENST00000265745 MTX1Q13505 466 aa12.1□□□□□ -0.47
VPS41-201ENST00000265745 FKBP1CQ5VVH2 108 aa12.1□□□□□ -0.47
VPS41-201ENST00000265745 ATF7IPQ6VMQ6 1270 aa12.1□□□□□ -0.47
VPS41-201ENST00000265745 IFNL1Q8IU54 200 aa12.1□□□□□ -0.47
VPS41-201ENST00000265745 ANKRD13AQ8IZ07 590 aa12.1□□□□□ -0.47
VPS41-201ENST00000265745 GNL3LQ9NVN8 582 aaKnown RBP12.1□□□□□ -0.47
VPS41-201ENST00000265745 MAST3O60307 1309 aa12.1□□□□□ -0.47
VPS41-201ENST00000265745 SRGAP3O43295 1099 aa12.09□□□□□ -0.47
VPS41-201ENST00000265745 ALDH1A1P00352 501 aa12.09□□□□□ -0.47
VPS41-201ENST00000265745 GJA5P36382 358 aa12.09□□□□□ -0.47
VPS41-201ENST00000265745 CACNB3P54284 484 aa12.09□□□□□ -0.47
VPS41-201ENST00000265745 PPP1R3FQ6ZSY5 799 aaPredicted RBP12.09□□□□□ -0.47
VPS41-201ENST00000265745 FRAT1Q92837 279 aaPredicted RBP12.09□□□□□ -0.47
VPS41-201ENST00000265745 TNNQ9UQP3 1299 aa12.09□□□□□ -0.47
VPS41-201ENST00000265745 PHKA1P46020 1223 aa12.08□□□□□ -0.48
VPS41-201ENST00000265745 TIMM10P62072 90 aa12.08□□□□□ -0.48
VPS41-201ENST00000265745 MAP3K9P80192 1104 aa12.08□□□□□ -0.48
VPS41-201ENST00000265745 FAM83AQ86UY5 434 aa12.08□□□□□ -0.48
VPS41-201ENST00000265745 TESPA1A2RU30 521 aaPredicted RBP12.07□□□□□ -0.48
VPS41-201ENST00000265745 IGF2BP3O00425 579 aaKnown RBP eCLIP12.07□□□□□ -0.48
VPS41-201ENST00000265745 SEMA3EO15041 775 aa12.07□□□□□ -0.48
VPS41-201ENST00000265745 FKTNO75072 461 aa12.07□□□□□ -0.48
VPS41-201ENST00000265745 ADORA1P30542 326 aa12.07□□□□□ -0.48
VPS41-201ENST00000265745 PKN2Q16513 984 aaKnown RBP12.07□□□□□ -0.48
VPS41-201ENST00000265745 DIEXFQ68CQ4 756 aaKnown RBP12.07□□□□□ -0.48
VPS41-201ENST00000265745 CCDC102BQ68D86 513 aa12.07□□□□□ -0.48
VPS41-201ENST00000265745 DDX55Q8NHQ9 600 aaKnown RBP eCLIP12.07□□□□□ -0.48
VPS41-201ENST00000265745 CLUAP1Q96AJ1 413 aa12.07□□□□□ -0.48
VPS41-201ENST00000265745 MS4A4AQ96JQ5 239 aa12.07□□□□□ -0.48
VPS41-201ENST00000265745 PTPN18Q99952 460 aa12.07□□□□□ -0.48
VPS41-201ENST00000265745 TSPYL2Q9H2G4 693 aaPredicted RBP12.07□□□□□ -0.48
VPS41-201ENST00000265745 ELP3Q9H9T3 547 aa12.07□□□□□ -0.48
VPS41-201ENST00000265745 TMOD2Q9NZR1 351 aa12.07□□□□□ -0.48
VPS41-201ENST00000265745 DENND2AQ9ULE3 1009 aa12.07□□□□□ -0.48
VPS41-201ENST00000265745 DAGLAQ9Y4D2 1042 aa12.07□□□□□ -0.48
VPS41-201ENST00000265745 SALL1Q9NSC2 1324 aa12.07□□□□□ -0.48
VPS41-201ENST00000265745 GNAI2P04899 355 aa12.06□□□□□ -0.48
VPS41-201ENST00000265745 LDHBP07195 334 aaKnown RBP12.06□□□□□ -0.48
VPS41-201ENST00000265745 PRDX5P30044 214 aa12.06□□□□□ -0.48
VPS41-201ENST00000265745 HNRNPUQ00839 825 aaKnown RBP eCLIP12.06□□□□□ -0.48
VPS41-201ENST00000265745 TFCP2Q12800 502 aa12.06□□□□□ -0.48
VPS41-201ENST00000265745 VGLL4Q14135 290 aa12.06□□□□□ -0.48
VPS41-201ENST00000265745 DIXDC1Q155Q3 683 aa12.06□□□□□ -0.48
VPS41-201ENST00000265745 ZKSCAN2Q63HK3 967 aa12.06□□□□□ -0.48
VPS41-201ENST00000265745 CDC42EP5Q6NZY7 148 aa12.06□□□□□ -0.48
VPS41-201ENST00000265745 ZNF467Q7Z7K2 595 aaPredicted RBP12.06□□□□□ -0.48
VPS41-201ENST00000265745 OPTNQ96CV9 577 aa12.06□□□□□ -0.48
VPS41-201ENST00000265745 AKAP2Q9Y2D5 859 aa12.06□□□□□ -0.48
VPS41-201ENST00000265745 CASP8AP2Q9UKL3 1982 aa12.05□□□□□ -0.48
VPS41-201ENST00000265745 A0A1B0GUL7 405 aa12.05□□□□□ -0.48
VPS41-201ENST00000265745 MLLT1Q03111 559 aaPredicted RBP12.05□□□□□ -0.48
VPS41-201ENST00000265745 RASGRF1Q13972 1273 aa12.05□□□□□ -0.48
VPS41-201ENST00000265745 OTUD7BQ6GQQ9 843 aa12.05□□□□□ -0.48
VPS41-201ENST00000265745 TMEM57Q8N5G2 664 aa12.05□□□□□ -0.48
VPS41-201ENST00000265745 FAM151AQ8WW52 585 aa12.05□□□□□ -0.48
VPS41-201ENST00000265745 HOOK2Q96ED9 719 aa12.05□□□□□ -0.48
VPS41-201ENST00000265745 XAGE2Q96GT9 111 aa12.05□□□□□ -0.48
VPS41-201ENST00000265745 CSADQ9Y600 493 aa12.05□□□□□ -0.48
VPS41-201ENST00000265745 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP12.05□□□□□ -0.48
VPS41-201ENST00000265745 PNMA6EA0A0J9YXQ4 647 aa12.04□□□□□ -0.48
VPS41-201ENST00000265745 NFIAQ12857 509 aa12.04□□□□□ -0.48
VPS41-201ENST00000265745 MIGA2Q7L4E1 593 aa12.04□□□□□ -0.48
VPS41-201ENST00000265745 ZGPATQ8N5A5 531 aaKnown RBP12.04□□□□□ -0.48
VPS41-201ENST00000265745 USP40Q9NVE5 1235 aa12.04□□□□□ -0.48
VPS41-201ENST00000265745 HPS5Q9UPZ3 1129 aa12.04□□□□□ -0.48
VPS41-201ENST00000265745 A0A1B0GUL6 1792 aa12.03□□□□□ -0.48
VPS41-201ENST00000265745 SPDYE5A6NIY4 337 aa12.03□□□□□ -0.48
VPS41-201ENST00000265745 GTF2A2P52657 109 aa12.03□□□□□ -0.48
VPS41-201ENST00000265745 TCP10Q12799 353 aa12.03□□□□□ -0.48
VPS41-201ENST00000265745 CRHR2Q13324 411 aa12.03□□□□□ -0.48
VPS41-201ENST00000265745 MVPQ14764 893 aaKnown RBP12.03□□□□□ -0.48
VPS41-201ENST00000265745 DCAF15Q66K64 600 aa12.03□□□□□ -0.48
VPS41-201ENST00000265745 FBXO46Q6PJ61 603 aaPredicted RBP12.03□□□□□ -0.48
VPS41-201ENST00000265745 ERO1BQ86YB8 467 aa12.03□□□□□ -0.48
VPS41-201ENST00000265745 BRI3BPQ8WY22 251 aa12.03□□□□□ -0.48
VPS41-201ENST00000265745 ZKSCAN4Q969J2 545 aaPredicted RBP12.03□□□□□ -0.48
VPS41-201ENST00000265745 OTUD5Q96G74 571 aa12.03□□□□□ -0.48
VPS41-201ENST00000265745 FAM163AQ96GL9 167 aaPredicted RBP12.03□□□□□ -0.48
VPS41-201ENST00000265745 WRNIP1Q96S55 665 aa12.03□□□□□ -0.48
VPS41-201ENST00000265745 FAM198AQ9UFP1 575 aa12.03□□□□□ -0.48
VPS41-201ENST00000265745 SNCAIPQ9Y6H5 919 aa12.03□□□□□ -0.48
VPS41-201ENST00000265745 PDS5AQ29RF7 1337 aaKnown RBP12.03□□□□□ -0.48
VPS41-201ENST00000265745 G3BP1Q13283 466 aaKnown RBP eCLIP12.02□□□□□ -0.49
VPS41-201ENST00000265745 PDAP1Q13442 181 aaKnown RBP12.02□□□□□ -0.49
VPS41-201ENST00000265745 ZFPM1Q8IX07 1006 aa12.02□□□□□ -0.49
VPS41-201ENST00000265745 NEUROD6Q96NK8 337 aa12.02□□□□□ -0.49
VPS41-201ENST00000265745 ABCF2Q9UG63 623 aa12.02□□□□□ -0.49
VPS41-201ENST00000265745 ZNF112Q9UJU3 913 aa12.02□□□□□ -0.49
VPS41-201ENST00000265745 RPAP1Q9BWH6 1393 aaPredicted RBP12.02□□□□□ -0.49
VPS41-201ENST00000265745 CCL15-CCL14A0A0B4J2E2 113 aa12.01□□□□□ -0.49
VPS41-201ENST00000265745 IRF6O14896 467 aa12.01□□□□□ -0.49
VPS41-201ENST00000265745 INPP5BP32019 993 aa12.01□□□□□ -0.49
VPS41-201ENST00000265745 SOX10P56693 466 aa12.01□□□□□ -0.49
VPS41-201ENST00000265745 ATP8B2P98198 1209 aa12.01□□□□□ -0.49
VPS41-201ENST00000265745 CCL15Q16663 113 aa12.01□□□□□ -0.49
VPS41-201ENST00000265745 SPTY2D1Q68D10 685 aaPredicted RBP12.01□□□□□ -0.49
VPS41-201ENST00000265745 SSH3Q8TE77 659 aa12.01□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 48.7 ms