RNA–Protein interactions for RNA: ENST00000262554.6

SPTLC1-201, Transcript of serine palmitoyltransferase long chain base subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SPTLC1, Length 1,894 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTLC1-201ENST00000262554 ABCF2Q9UG63 623 aa15.14■□□□□ 0.01
SPTLC1-201ENST00000262554 NEDD4P46934 1319 aa15.13■□□□□ 0.01
SPTLC1-201ENST00000262554 AFF2P51816 1311 aa15.13■□□□□ 0.01
SPTLC1-201ENST00000262554 ESPNB1AK53 854 aa15.13■□□□□ 0.01
SPTLC1-201ENST00000262554 RFC4P35249 363 aa15.13■□□□□ 0.01
SPTLC1-201ENST00000262554 AKNAD1Q5T1N1 836 aa15.13■□□□□ 0.01
SPTLC1-201ENST00000262554 GIMAP6Q6P9H5 292 aa15.13■□□□□ 0.01
SPTLC1-201ENST00000262554 MFSD6Q6ZSS7 791 aa15.13■□□□□ 0.01
SPTLC1-201ENST00000262554 C8orf76Q96K31 380 aa15.13■□□□□ 0.01
SPTLC1-201ENST00000262554 NUP62CLQ9H1M0 184 aa15.13■□□□□ 0.01
SPTLC1-201ENST00000262554 ORC3Q9UBD5 711 aaPredicted RBP15.13■□□□□ 0.01
SPTLC1-201ENST00000262554 SEMA3EO15041 775 aa15.12■□□□□ 0.01
SPTLC1-201ENST00000262554 NPHP1O15259 732 aa15.12■□□□□ 0.01
SPTLC1-201ENST00000262554 PPFIA3O75145 1194 aa15.12■□□□□ 0.01
SPTLC1-201ENST00000262554 CDKL5O76039 1030 aa15.12■□□□□ 0.01
SPTLC1-201ENST00000262554 LIG1P18858 919 aa15.12■□□□□ 0.01
SPTLC1-201ENST00000262554 METAP2P50579 478 aaKnown RBP eCLIP15.12■□□□□ 0.01
SPTLC1-201ENST00000262554 CTDSPL2Q05D32 466 aa15.12■□□□□ 0.01
SPTLC1-201ENST00000262554 TRAPPC3LQ5T215 181 aa15.12■□□□□ 0.01
SPTLC1-201ENST00000262554 MIGA1Q8NAN2 632 aa15.12■□□□□ 0.01
SPTLC1-201ENST00000262554 BICD2Q8TD16 824 aa15.12■□□□□ 0.01
SPTLC1-201ENST00000262554 FAM84BQ96KN1 310 aaPredicted RBP15.12■□□□□ 0.01
SPTLC1-201ENST00000262554 DDX19AQ9NUU7 478 aaKnown RBP15.12■□□□□ 0.01
SPTLC1-201ENST00000262554 COL1A1P02452 1464 aaPredicted RBP15.12■□□□□ 0.01
SPTLC1-201ENST00000262554 MAGEB6P1A0A0J9YX57 407 aa15.12■□□□□ 0.01
SPTLC1-201ENST00000262554 PRKAB2O43741 272 aa15.12■□□□□ 0.01
SPTLC1-201ENST00000262554 ONECUT3O60422 494 aaPredicted RBP15.12■□□□□ 0.01
SPTLC1-201ENST00000262554 ADD1P35611 737 aaKnown RBP15.12■□□□□ 0.01
SPTLC1-201ENST00000262554 GUCY1B3Q02153 619 aa15.12■□□□□ 0.01
SPTLC1-201ENST00000262554 TMEM67Q5HYA8 995 aa15.12■□□□□ 0.01
SPTLC1-201ENST00000262554 CPLX2Q6PUV4 134 aaKnown RBP15.12■□□□□ 0.01
SPTLC1-201ENST00000262554 NFXL1Q6ZNB6 911 aa15.12■□□□□ 0.01
SPTLC1-201ENST00000262554 RAB11FIP4Q86YS3 637 aa15.12■□□□□ 0.01
SPTLC1-201ENST00000262554 RGS22Q8NE09 1264 aa15.12■□□□□ 0.01
SPTLC1-201ENST00000262554 IGDCC4Q8TDY8 1250 aa15.12■□□□□ 0.01
SPTLC1-201ENST00000262554 STAG1Q8WVM7 1258 aa15.12■□□□□ 0.01
SPTLC1-201ENST00000262554 CACNA1SQ13698 1873 aa15.11■□□□□ 0.01
SPTLC1-201ENST00000262554 MAP3K11Q16584 847 aa15.11■□□□□ 0.01
SPTLC1-201ENST00000262554 HS1BP3Q53T59 392 aa15.11■□□□□ 0.01
SPTLC1-201ENST00000262554 APOA5Q6Q788 366 aa15.11■□□□□ 0.01
SPTLC1-201ENST00000262554 FBXO33Q7Z6M2 555 aa15.11■□□□□ 0.01
SPTLC1-201ENST00000262554 SGMS1Q86VZ5 419 aa15.11■□□□□ 0.01
SPTLC1-201ENST00000262554 PGBD1Q96JS3 809 aa15.11■□□□□ 0.01
SPTLC1-201ENST00000262554 FUCA2Q9BTY2 467 aa15.11■□□□□ 0.01
SPTLC1-201ENST00000262554 RCOR1Q9UKL0 485 aa15.11■□□□□ 0.01
SPTLC1-201ENST00000262554 TRPC5Q9UL62 973 aaPredicted RBP15.11■□□□□ 0.01
SPTLC1-201ENST00000262554 WTIPA6NIX2 430 aaPredicted RBP15.1■□□□□ 0.01
SPTLC1-201ENST00000262554 IFIT3O14879 490 aaKnown RBP15.1■□□□□ 0.01
SPTLC1-201ENST00000262554 KDM4AO75164 1064 aa15.1■□□□□ 0.01
SPTLC1-201ENST00000262554 CCDC192P0DO97 292 aa15.1■□□□□ 0.01
SPTLC1-201ENST00000262554 LIFRP42702 1097 aa15.1■□□□□ 0.01
SPTLC1-201ENST00000262554 CEBPZQ03701 1054 aaKnown RBP15.1■□□□□ 0.01
SPTLC1-201ENST00000262554 AMIGO3Q86WK7 504 aa15.1■□□□□ 0.01
SPTLC1-201ENST00000262554 SEPT12Q8IYM1 358 aa15.1■□□□□ 0.01
SPTLC1-201ENST00000262554 FBXO18Q8NFZ0 1043 aa15.1■□□□□ 0.01
SPTLC1-201ENST00000262554 TNMDQ9H2S6 317 aa15.1■□□□□ 0.01
SPTLC1-201ENST00000262554 RNF41Q9H4P4 317 aaPredicted RBP15.1■□□□□ 0.01
SPTLC1-201ENST00000262554 LY9Q9HBG7 655 aa15.1■□□□□ 0.01
SPTLC1-201ENST00000262554 DACT1Q9NYF0 836 aa15.1■□□□□ 0.01
SPTLC1-201ENST00000262554 ZSWIM5Q9P217 1185 aa15.1■□□□□ 0.01
SPTLC1-201ENST00000262554 PDS5AQ29RF7 1337 aaKnown RBP15.1■□□□□ 0.01
SPTLC1-201ENST00000262554 ZBTB43O43298 467 aa15.1■□□□□ 0.01
SPTLC1-201ENST00000262554 SART3Q15020 963 aaKnown RBP15.1■□□□□ 0.01
SPTLC1-201ENST00000262554 FAM196AQ6ZSG2 479 aa15.1■□□□□ 0.01
SPTLC1-201ENST00000262554 ADGRA1Q86SQ6 560 aa15.1■□□□□ 0.01
SPTLC1-201ENST00000262554 NKX2-3Q8TAU0 364 aa15.1■□□□□ 0.01
SPTLC1-201ENST00000262554 BCL11BQ9C0K0 894 aaPredicted RBP15.1■□□□□ 0.01
SPTLC1-201ENST00000262554 INCENPQ9NQS7 918 aa15.1■□□□□ 0.01
SPTLC1-201ENST00000262554 CCDC69A6NI79 296 aa15.09■□□□□ 0.01
SPTLC1-201ENST00000262554 HIBADHP31937 336 aaKnown RBP15.09■□□□□ 0.01
SPTLC1-201ENST00000262554 SYNE3Q6ZMZ3 975 aa15.09■□□□□ 0.01
SPTLC1-201ENST00000262554 MICU3Q86XE3 530 aa15.09■□□□□ 0.01
SPTLC1-201ENST00000262554 CCDC24Q8N4L8 307 aa15.09■□□□□ 0.01
SPTLC1-201ENST00000262554 CERKQ8TCT0 537 aa15.09■□□□□ 0.01
SPTLC1-201ENST00000262554 USP28Q96RU2 1077 aa15.09■□□□□ 0.01
SPTLC1-201ENST00000262554 MTA3Q9BTC8 594 aa15.09■□□□□ 0.01
SPTLC1-201ENST00000262554 TOMM22Q9NS69 142 aa15.09■□□□□ 0.01
SPTLC1-201ENST00000262554 TNRC6CQ9HCJ0 1690 aaKnown RBP15.09■□□□□ 0.01
SPTLC1-201ENST00000262554 GOLGA8AA7E2F4 631 aa15.08■□□□□ 0.01
SPTLC1-201ENST00000262554 TM4SF1P30408 202 aa15.08■□□□□ 0.01
SPTLC1-201ENST00000262554 CLCN1P35523 988 aa15.08■□□□□ 0.01
SPTLC1-201ENST00000262554 PPARAQ07869 468 aa15.08■□□□□ 0.01
SPTLC1-201ENST00000262554 RRP12Q5JTH9 1297 aaKnown RBP15.08■□□□□ 0.01
SPTLC1-201ENST00000262554 BRAPQ7Z569 592 aa15.08■□□□□ 0.01
SPTLC1-201ENST00000262554 ILDR1Q86SU0 546 aaPredicted RBP15.08■□□□□ 0.01
SPTLC1-201ENST00000262554 CLSTN2Q9H4D0 955 aa15.08■□□□□ 0.01
SPTLC1-201ENST00000262554 SLC12A7Q9Y666 1083 aa15.08■□□□□ 0.01
SPTLC1-201ENST00000262554 CCDC88AQ3V6T2 1871 aa15.08■□□□□ 0
SPTLC1-201ENST00000262554 ERICH2A1L162 156 aa15.08■□□□□ 0
SPTLC1-201ENST00000262554 HSPA1LP34931 641 aa15.08■□□□□ 0
SPTLC1-201ENST00000262554 VASPP50552 380 aaPredicted RBP15.08■□□□□ 0
SPTLC1-201ENST00000262554 CAMK4Q16566 473 aa15.08■□□□□ 0
SPTLC1-201ENST00000262554 RIOK1Q9BRS2 568 aaKnown RBP15.08■□□□□ 0
SPTLC1-201ENST00000262554 SENP2Q9HC62 589 aa15.08■□□□□ 0
SPTLC1-201ENST00000262554 TACC3Q9Y6A5 838 aa15.08■□□□□ 0
SPTLC1-201ENST00000262554 ECM29Q5VYK3 1845 aa15.07■□□□□ 0
SPTLC1-201ENST00000262554 NR1I2O75469 434 aa15.07■□□□□ 0
SPTLC1-201ENST00000262554 OTUD7BQ6GQQ9 843 aa15.07■□□□□ 0
SPTLC1-201ENST00000262554 ZSCAN30Q86W11 494 aa15.07■□□□□ 0
SPTLC1-201ENST00000262554 TMTC2Q8N394 836 aa15.07■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 136.3 ms