RNA–Protein interactions for RNA: ENST00000254950.12

VPS4A-201, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4A, Length 4,100 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-201ENST00000254950 TCEAL9Q9UHQ7 104 aa13.47□□□□□ -0.25
VPS4A-201ENST00000254950 SLIT2O94813 1529 aa13.47□□□□□ -0.25
VPS4A-201ENST00000254950 STRCQ7RTU9 1775 aa13.47□□□□□ -0.25
VPS4A-201ENST00000254950 PRDM1O75626 825 aa13.46□□□□□ -0.25
VPS4A-201ENST00000254950 CYP21A2P08686 494 aa13.46□□□□□ -0.25
VPS4A-201ENST00000254950 RAB3GAP1Q15042 981 aa13.46□□□□□ -0.25
VPS4A-201ENST00000254950 SDR42E1Q8WUS8 393 aa13.46□□□□□ -0.25
VPS4A-201ENST00000254950 PUS7LQ9H0K6 701 aaKnown RBP13.46□□□□□ -0.25
VPS4A-201ENST00000254950 ARPP21Q9UBL0 812 aaPredicted RBP13.46□□□□□ -0.25
VPS4A-201ENST00000254950 MRC1P22897 1456 aa13.46□□□□□ -0.25
VPS4A-201ENST00000254950 RGPD1P0DJD0 1748 aa13.46□□□□□ -0.25
VPS4A-201ENST00000254950 PPARAQ07869 468 aa13.46□□□□□ -0.25
VPS4A-201ENST00000254950 SLC10A5Q5PT55 438 aa13.46□□□□□ -0.25
VPS4A-201ENST00000254950 MAPKAPK5Q8IW41 473 aa13.46□□□□□ -0.25
VPS4A-201ENST00000254950 NLRP5P59047 1200 aa13.46□□□□□ -0.26
VPS4A-201ENST00000254950 TGFBRAP1Q8WUH2 860 aa13.46□□□□□ -0.26
VPS4A-201ENST00000254950 TFIP11Q9UBB9 837 aaKnown RBP13.45□□□□□ -0.26
VPS4A-201ENST00000254950 CEP131Q9UPN4 1083 aa13.45□□□□□ -0.26
VPS4A-201ENST00000254950 DISP2A7MBM2 1401 aa13.45□□□□□ -0.26
VPS4A-201ENST00000254950 GYS1P13807 737 aa13.45□□□□□ -0.26
VPS4A-201ENST00000254950 ADCK5Q3MIX3 580 aa13.45□□□□□ -0.26
VPS4A-201ENST00000254950 PTF1AQ7RTS3 328 aa13.45□□□□□ -0.26
VPS4A-201ENST00000254950 LLPHQ9BRT6 129 aaKnown RBP13.45□□□□□ -0.26
VPS4A-201ENST00000254950 ANO8Q9HCE9 1232 aaPredicted RBP13.45□□□□□ -0.26
VPS4A-201ENST00000254950 BCS1LQ9Y276 419 aa13.45□□□□□ -0.26
VPS4A-201ENST00000254950 SCARF1Q14162 830 aa13.45□□□□□ -0.26
VPS4A-201ENST00000254950 NECTIN1Q15223 517 aa13.45□□□□□ -0.26
VPS4A-201ENST00000254950 LRP10Q7Z4F1 713 aa13.45□□□□□ -0.26
VPS4A-201ENST00000254950 FBXO41Q8TF61 875 aa13.45□□□□□ -0.26
VPS4A-201ENST00000254950 CRAMP1Q96RY5 1269 aa13.45□□□□□ -0.26
VPS4A-201ENST00000254950 ATP8A2Q9NTI2 1148 aa13.45□□□□□ -0.26
VPS4A-201ENST00000254950 F13A1P00488 732 aa13.45□□□□□ -0.26
VPS4A-201ENST00000254950 SYT1P21579 422 aa13.45□□□□□ -0.26
VPS4A-201ENST00000254950 MSNP26038 577 aaKnown RBP13.45□□□□□ -0.26
VPS4A-201ENST00000254950 ARID4AP29374 1257 aaPredicted RBP13.45□□□□□ -0.26
VPS4A-201ENST00000254950 TPD52L1Q16890 204 aaPredicted RBP13.45□□□□□ -0.26
VPS4A-201ENST00000254950 CCDC12Q8WUD4 166 aaPredicted RBP13.45□□□□□ -0.26
VPS4A-201ENST00000254950 COA1Q9GZY4 146 aa13.45□□□□□ -0.26
VPS4A-201ENST00000254950 GDPD2Q9HCC8 539 aa13.45□□□□□ -0.26
VPS4A-201ENST00000254950 FAM13BQ9NYF5 915 aa13.45□□□□□ -0.26
VPS4A-201ENST00000254950 ATF5Q9Y2D1 282 aaPredicted RBP13.45□□□□□ -0.26
VPS4A-201ENST00000254950 DNTTIP2Q5QJE6 756 aaKnown RBP13.44□□□□□ -0.26
VPS4A-201ENST00000254950 TTLL6Q8N841 843 aa13.44□□□□□ -0.26
VPS4A-201ENST00000254950 FEZ1Q99689 392 aa13.44□□□□□ -0.26
VPS4A-201ENST00000254950 RBM27Q9P2N5 1060 aaKnown RBP13.44□□□□□ -0.26
VPS4A-201ENST00000254950 RXRAP19793 462 aa13.44□□□□□ -0.26
VPS4A-201ENST00000254950 TNMDQ9H2S6 317 aa13.44□□□□□ -0.26
VPS4A-201ENST00000254950 MRE11P49959 708 aa13.44□□□□□ -0.26
VPS4A-201ENST00000254950 CCDC93Q567U6 631 aa13.44□□□□□ -0.26
VPS4A-201ENST00000254950 RBM26Q5T8P6 1007 aaKnown RBP13.44□□□□□ -0.26
VPS4A-201ENST00000254950 PLSCR1O15162 318 aa13.43□□□□□ -0.26
VPS4A-201ENST00000254950 CDK11BP21127 795 aaKnown RBP13.43□□□□□ -0.26
VPS4A-201ENST00000254950 BTDP43251 543 aa13.43□□□□□ -0.26
VPS4A-201ENST00000254950 KIAA0825Q8IV33 1275 aa13.43□□□□□ -0.26
VPS4A-201ENST00000254950 FAM84BQ96KN1 310 aaPredicted RBP13.43□□□□□ -0.26
VPS4A-201ENST00000254950 GPR101Q96P66 508 aaPredicted RBP13.43□□□□□ -0.26
VPS4A-201ENST00000254950 VAT1LQ9HCJ6 419 aa13.43□□□□□ -0.26
VPS4A-201ENST00000254950 USP40Q9NVE5 1235 aa13.43□□□□□ -0.26
VPS4A-201ENST00000254950 EIF6P56537 245 aaKnown RBP13.43□□□□□ -0.26
VPS4A-201ENST00000254950 SLC15A2Q16348 729 aa13.43□□□□□ -0.26
VPS4A-201ENST00000254950 TMED8Q6PL24 325 aaPredicted RBP13.43□□□□□ -0.26
VPS4A-201ENST00000254950 CCDC194A0A1B0GVG4 234 aa13.43□□□□□ -0.26
VPS4A-201ENST00000254950 SP8Q8IXZ3 490 aa13.43□□□□□ -0.26
VPS4A-201ENST00000254950 NUP62CLQ9H1M0 184 aa13.43□□□□□ -0.26
VPS4A-201ENST00000254950 ZNF609O15014 1411 aa13.42□□□□□ -0.26
VPS4A-201ENST00000254950 KIAA2012Q0VF49 1180 aa13.42□□□□□ -0.26
VPS4A-201ENST00000254950 EZH2Q15910 746 aaKnown RBP13.42□□□□□ -0.26
VPS4A-201ENST00000254950 LCORLQ8N3X6 602 aa13.42□□□□□ -0.26
VPS4A-201ENST00000254950 ZNF512BQ96KM6 892 aaPredicted RBP13.42□□□□□ -0.26
VPS4A-201ENST00000254950 STRBPQ96SI9 672 aaKnown RBP13.42□□□□□ -0.26
VPS4A-201ENST00000254950 NCOA5Q9HCD5 579 aaKnown RBP13.42□□□□□ -0.26
VPS4A-201ENST00000254950 CD209Q9NNX6 404 aa13.42□□□□□ -0.26
VPS4A-201ENST00000254950 TNNI2P48788 182 aa13.42□□□□□ -0.26
VPS4A-201ENST00000254950 ME3Q16798 604 aa13.42□□□□□ -0.26
VPS4A-201ENST00000254950 TSPY26PQ9H489 355 aa13.42□□□□□ -0.26
VPS4A-201ENST00000254950 DBNDD1Q9H9R9 158 aa13.42□□□□□ -0.26
VPS4A-201ENST00000254950 GJA3Q9Y6H8 435 aa13.42□□□□□ -0.26
VPS4A-201ENST00000254950 DYNLL1P63167 89 aaKnown RBP13.42□□□□□ -0.26
VPS4A-201ENST00000254950 DLGAP5Q15398 846 aa13.42□□□□□ -0.26
VPS4A-201ENST00000254950 RNF214Q8ND24 703 aa13.42□□□□□ -0.26
VPS4A-201ENST00000254950 NAT10Q9H0A0 1025 aaKnown RBP13.42□□□□□ -0.26
VPS4A-201ENST00000254950 RBM28Q9NW13 759 aaKnown RBP13.42□□□□□ -0.26
VPS4A-201ENST00000254950 BCL9LQ86UU0 1499 aa13.42□□□□□ -0.26
VPS4A-201ENST00000254950 PCP11498 1178 aaKnown RBP13.41□□□□□ -0.26
VPS4A-201ENST00000254950 SCNN1DP51172 638 aa13.41□□□□□ -0.26
VPS4A-201ENST00000254950 MECOMQ03112 1051 aa13.41□□□□□ -0.26
VPS4A-201ENST00000254950 SLFNL1Q499Z3 407 aa13.41□□□□□ -0.26
VPS4A-201ENST00000254950 HOMER1Q86YM7 354 aa13.41□□□□□ -0.26
VPS4A-201ENST00000254950 CREBRFQ8IUR6 639 aa13.41□□□□□ -0.26
VPS4A-201ENST00000254950 ZNF274Q96GC6 653 aaPredicted RBP13.41□□□□□ -0.26
VPS4A-201ENST00000254950 SALL3Q9BXA9 1300 aa13.41□□□□□ -0.26
VPS4A-201ENST00000254950 GPSM2P81274 684 aa13.41□□□□□ -0.26
VPS4A-201ENST00000254950 COL23A1Q86Y22 540 aaPredicted RBP13.41□□□□□ -0.26
VPS4A-201ENST00000254950 STRCP1A6NGW2 1772 aa13.41□□□□□ -0.26
VPS4A-201ENST00000254950 CCDC192P0DO97 292 aa13.41□□□□□ -0.26
VPS4A-201ENST00000254950 CDK5RAP3Q96JB5 506 aa13.41□□□□□ -0.26
VPS4A-201ENST00000254950 PRKAB2O43741 272 aa13.41□□□□□ -0.26
VPS4A-201ENST00000254950 ZBTB7AO95365 584 aa13.41□□□□□ -0.26
VPS4A-201ENST00000254950 PPP2R5BQ15173 497 aa13.41□□□□□ -0.26
VPS4A-201ENST00000254950 RTKN2Q8IZC4 609 aa13.41□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms