RNA–Protein interactions for RNA: ENST00000216414.12

CDKN3-201, Transcript of cyclin dependent kinase inhibitor 3, humanhuman

TSL 1 (best)

Gene CDKN3, Length 373 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDKN3-201ENST00000216414 PAPLNO95428 1278 aa5.78□□□□□ -1.48
CDKN3-201ENST00000216414 USPL1Q5W0Q7 1092 aa5.78□□□□□ -1.48
CDKN3-201ENST00000216414 OGFOD3Q6PK18 319 aa5.78□□□□□ -1.48
CDKN3-201ENST00000216414 CCER1Q8TC90 406 aaPredicted RBP5.78□□□□□ -1.48
CDKN3-201ENST00000216414 EHD4Q9H223 541 aa5.78□□□□□ -1.48
CDKN3-201ENST00000216414 B3GALT4O96024 378 aa5.77□□□□□ -1.49
CDKN3-201ENST00000216414 BNIP3Q12983 259 aa5.77□□□□□ -1.49
CDKN3-201ENST00000216414 ZNF792Q3KQV3 632 aa5.77□□□□□ -1.49
CDKN3-201ENST00000216414 KRTAP19-4Q3LI73 84 aa5.77□□□□□ -1.49
CDKN3-201ENST00000216414 CYP27C1Q4G0S4 372 aa5.77□□□□□ -1.49
CDKN3-201ENST00000216414 SEZ6L2Q6UXD5 910 aa5.77□□□□□ -1.49
CDKN3-201ENST00000216414 SPRED2Q7Z698 418 aa5.77□□□□□ -1.49
CDKN3-201ENST00000216414 STK11IPQ8N1F8 1099 aa5.77□□□□□ -1.49
CDKN3-201ENST00000216414 WDR18Q9BV38 432 aa5.77□□□□□ -1.49
CDKN3-201ENST00000216414 KRTAP4-5Q9BYR2 181 aa5.77□□□□□ -1.49
CDKN3-201ENST00000216414 GSX1Q9H4S2 264 aaPredicted RBP5.77□□□□□ -1.49
CDKN3-201ENST00000216414 ZNF576Q9H609 170 aa5.77□□□□□ -1.49
CDKN3-201ENST00000216414 CARNS1A5YM72 827 aa5.76□□□□□ -1.49
CDKN3-201ENST00000216414 PIDD1Q9HB75 910 aa5.76□□□□□ -1.49
CDKN3-201ENST00000216414 BRPF3Q9ULD4 1205 aa5.76□□□□□ -1.49
CDKN3-201ENST00000216414 PPP1R9AQ9ULJ8 1098 aa5.76□□□□□ -1.49
CDKN3-201ENST00000216414 NEFLP07196 543 aa5.75□□□□□ -1.49
CDKN3-201ENST00000216414 FAM87AP0C7U9 286 aa5.75□□□□□ -1.49
CDKN3-201ENST00000216414 LIG1P18858 919 aa5.75□□□□□ -1.49
CDKN3-201ENST00000216414 CDK5R2Q13319 367 aa5.75□□□□□ -1.49
CDKN3-201ENST00000216414 AP3B2Q13367 1082 aa5.75□□□□□ -1.49
CDKN3-201ENST00000216414 KIAA0319Q5VV43 1072 aa5.75□□□□□ -1.49
CDKN3-201ENST00000216414 PHLDB3Q6NSJ2 640 aa5.75□□□□□ -1.49
CDKN3-201ENST00000216414 PLD6Q8N2A8 252 aaKnown RBP5.75□□□□□ -1.49
CDKN3-201ENST00000216414 ZC3H12CQ9C0D7 883 aaKnown RBP5.75□□□□□ -1.49
CDKN3-201ENST00000216414 NPHS2Q9NP85 383 aa5.75□□□□□ -1.49
CDKN3-201ENST00000216414 TMPRSS2O15393 492 aa5.74□□□□□ -1.49
CDKN3-201ENST00000216414 ITPKAP23677 461 aa5.74□□□□□ -1.49
CDKN3-201ENST00000216414 ZNF157P51786 506 aaPredicted RBP5.74□□□□□ -1.49
CDKN3-201ENST00000216414 ARHGAP27Q6ZUM4 889 aa5.74□□□□□ -1.49
CDKN3-201ENST00000216414 WFDC3Q8IUB2 231 aa5.74□□□□□ -1.49
CDKN3-201ENST00000216414 CCDC82Q8N4S0 544 aa5.74□□□□□ -1.49
CDKN3-201ENST00000216414 FAM181AQ8N9Y4 354 aa5.74□□□□□ -1.49
CDKN3-201ENST00000216414 NETO1Q8TDF5 533 aa5.74□□□□□ -1.49
CDKN3-201ENST00000216414 MISP3Q96FF7 219 aa5.74□□□□□ -1.49
CDKN3-201ENST00000216414 RC3H2Q9HBD1 1191 aaKnown RBP5.74□□□□□ -1.49
CDKN3-201ENST00000216414 H3BRB1 525 aa5.73□□□□□ -1.49
CDKN3-201ENST00000216414 CPNE3O75131 537 aaKnown RBP5.73□□□□□ -1.49
CDKN3-201ENST00000216414 PPP1R15AO75807 674 aaPredicted RBP5.73□□□□□ -1.49
CDKN3-201ENST00000216414 CD8BP10966 210 aa5.73□□□□□ -1.49
CDKN3-201ENST00000216414 ORC1Q13415 861 aa5.73□□□□□ -1.49
CDKN3-201ENST00000216414 FAM168AQ92567 244 aa5.73□□□□□ -1.49
CDKN3-201ENST00000216414 WDR89Q96FK6 387 aaPredicted RBP5.73□□□□□ -1.49
CDKN3-201ENST00000216414 ATXN3LQ9H3M9 355 aa5.73□□□□□ -1.49
CDKN3-201ENST00000216414 TUT1Q9H6E5 874 aaKnown RBP5.73□□□□□ -1.49
CDKN3-201ENST00000216414 CRIM1Q9NZV1 1036 aa5.73□□□□□ -1.49
CDKN3-201ENST00000216414 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP5.73□□□□□ -1.49
CDKN3-201ENST00000216414 CARMIL2Q6F5E8 1435 aa5.73□□□□□ -1.49
CDKN3-201ENST00000216414 RNGTTO60942 597 aaKnown RBP5.72□□□□□ -1.49
CDKN3-201ENST00000216414 GADD45BO75293 160 aaPredicted RBP5.72□□□□□ -1.49
CDKN3-201ENST00000216414 RNASE1P07998 156 aaKnown RBP5.72□□□□□ -1.49
CDKN3-201ENST00000216414 SLFN14P0C7P3 912 aa5.72□□□□□ -1.49
CDKN3-201ENST00000216414 FUT4P22083 530 aa5.72□□□□□ -1.49
CDKN3-201ENST00000216414 CD96P40200 585 aa5.72□□□□□ -1.49
CDKN3-201ENST00000216414 ID3Q02535 119 aa5.72□□□□□ -1.49
CDKN3-201ENST00000216414 ATG4DQ86TL0 474 aaPredicted RBP5.72□□□□□ -1.49
CDKN3-201ENST00000216414 GLYCTKQ8IVS8 523 aa5.72□□□□□ -1.49
CDKN3-201ENST00000216414 TMEM40Q8WWA1 233 aa5.72□□□□□ -1.49
CDKN3-201ENST00000216414 FANCD2OSQ96PS1 177 aa5.72□□□□□ -1.49
CDKN3-201ENST00000216414 CCDC86Q9H6F5 360 aaKnown RBP5.72□□□□□ -1.49
CDKN3-201ENST00000216414 ABCB6Q9NP58 842 aa5.72□□□□□ -1.49
CDKN3-201ENST00000216414 SYNGAP1Q96PV0 1343 aa5.72□□□□□ -1.49
CDKN3-201ENST00000216414 NDUFB5O43674 189 aa5.71□□□□□ -1.5
CDKN3-201ENST00000216414 ICMTO60725 284 aa5.71□□□□□ -1.5
CDKN3-201ENST00000216414 SMYD4Q8IYR2 804 aaPredicted RBP5.71□□□□□ -1.5
CDKN3-201ENST00000216414 PI4K2BQ8TCG2 481 aa5.71□□□□□ -1.5
CDKN3-201ENST00000216414 ZNF865P0CJ78 1059 aaPredicted RBP5.7□□□□□ -1.5
CDKN3-201ENST00000216414 HCLS1P14317 486 aaPredicted RBP5.7□□□□□ -1.5
CDKN3-201ENST00000216414 HNRNPUQ00839 825 aaKnown RBP eCLIP5.7□□□□□ -1.5
CDKN3-201ENST00000216414 PRKCQQ04759 706 aa5.7□□□□□ -1.5
CDKN3-201ENST00000216414 PTPN12Q05209 780 aaKnown RBP5.7□□□□□ -1.5
CDKN3-201ENST00000216414 PDE3BQ13370 1112 aa5.7□□□□□ -1.5
CDKN3-201ENST00000216414 TTLL4Q14679 1199 aa5.7□□□□□ -1.5
CDKN3-201ENST00000216414 IFI16Q16666 785 aaKnown RBP5.7□□□□□ -1.5
CDKN3-201ENST00000216414 GLIS3Q8NEA6 775 aa5.7□□□□□ -1.5
CDKN3-201ENST00000216414 FAM84AQ96KN4 292 aa5.7□□□□□ -1.5
CDKN3-201ENST00000216414 MBNL3Q9NUK0 354 aaKnown RBP5.7□□□□□ -1.5
CDKN3-201ENST00000216414 EGFL7Q9UHF1 273 aa5.7□□□□□ -1.5
CDKN3-201ENST00000216414 ADAMTS6Q9UKP5 1117 aa5.7□□□□□ -1.5
CDKN3-201ENST00000216414 VAV3Q9UKW4 847 aa5.7□□□□□ -1.5
CDKN3-201ENST00000216414 TMEM238LA0A1B0GVL6 79 aa5.69□□□□□ -1.5
CDKN3-201ENST00000216414 ZNF862O60290 1169 aa5.69□□□□□ -1.5
CDKN3-201ENST00000216414 LEFTY1O75610 366 aa5.69□□□□□ -1.5
CDKN3-201ENST00000216414 CEACAM5P06731 702 aa5.69□□□□□ -1.5
CDKN3-201ENST00000216414 SERPINB4P48594 390 aa5.69□□□□□ -1.5
CDKN3-201ENST00000216414 FAAP100Q0VG06 881 aa5.69□□□□□ -1.5
CDKN3-201ENST00000216414 AOC3Q16853 763 aa5.69□□□□□ -1.5
CDKN3-201ENST00000216414 LRRN4CLQ8ND94 238 aa5.69□□□□□ -1.5
CDKN3-201ENST00000216414 BHLHE22Q8NFJ8 381 aaPredicted RBP5.69□□□□□ -1.5
CDKN3-201ENST00000216414 TMC1Q8TDI8 760 aa5.69□□□□□ -1.5
CDKN3-201ENST00000216414 KCNB2Q92953 911 aa5.69□□□□□ -1.5
CDKN3-201ENST00000216414 CCDC74AQ96AQ1 378 aa5.69□□□□□ -1.5
CDKN3-201ENST00000216414 HRASLS5Q96KN8 279 aa5.69□□□□□ -1.5
CDKN3-201ENST00000216414 TOX2Q96NM4 488 aa5.69□□□□□ -1.5
CDKN3-201ENST00000216414 SSU72Q9NP77 194 aaKnown RBP5.69□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms