RNA–Protein interactions for RNA: ENST00000003302.8

USP28-201, Transcript of ubiquitin specific peptidase 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP28, Length 4,669 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-201ENST00000003302 BTBD18B2RXH4 712 aa12.42□□□□□ -0.42
USP28-201ENST00000003302 VEGFAP15692 232 aaPredicted RBP12.42□□□□□ -0.42
USP28-201ENST00000003302 CHAF1AQ13111 956 aaPredicted RBP12.42□□□□□ -0.42
USP28-201ENST00000003302 KRT40Q6A162 431 aa12.42□□□□□ -0.42
USP28-201ENST00000003302 LDHAL6AQ6ZMR3 332 aa12.42□□□□□ -0.42
USP28-201ENST00000003302 CCDC191Q8NCU4 936 aa12.42□□□□□ -0.42
USP28-201ENST00000003302 FANCLQ9NW38 375 aa12.42□□□□□ -0.42
USP28-201ENST00000003302 PKD1L3Q7Z443 1732 aa12.42□□□□□ -0.42
USP28-201ENST00000003302 UBN2Q6ZU65 1347 aa12.42□□□□□ -0.42
USP28-201ENST00000003302 TAF1P21675 1872 aa12.42□□□□□ -0.42
USP28-201ENST00000003302 TOGARAM1Q9Y4F4 1720 aa12.42□□□□□ -0.42
USP28-201ENST00000003302 ABL1P00519 1130 aa12.42□□□□□ -0.42
USP28-201ENST00000003302 ZBTB1Q9Y2K1 713 aa12.42□□□□□ -0.42
USP28-201ENST00000003302 TCIRG1Q13488 830 aa12.41□□□□□ -0.42
USP28-201ENST00000003302 MTF1Q14872 753 aa12.41□□□□□ -0.42
USP28-201ENST00000003302 METTL24Q5JXM2 366 aa12.41□□□□□ -0.42
USP28-201ENST00000003302 APOA5Q6Q788 366 aa12.41□□□□□ -0.42
USP28-201ENST00000003302 ARHGAP30Q7Z6I6 1101 aaPredicted RBP12.41□□□□□ -0.42
USP28-201ENST00000003302 ADGRA1Q86SQ6 560 aa12.41□□□□□ -0.42
USP28-201ENST00000003302 VGLL2Q8N8G2 317 aa12.41□□□□□ -0.42
USP28-201ENST00000003302 MAP3K14Q99558 947 aa12.41□□□□□ -0.42
USP28-201ENST00000003302 ZSWIM5Q9P217 1185 aa12.41□□□□□ -0.42
USP28-201ENST00000003302 SPATA31A3Q5VYP0 1347 aa12.41□□□□□ -0.42
USP28-201ENST00000003302 ZNF213O14771 459 aa12.41□□□□□ -0.42
USP28-201ENST00000003302 MIGA1Q8NAN2 632 aa12.41□□□□□ -0.42
USP28-201ENST00000003302 KIF18AQ8NI77 898 aa12.41□□□□□ -0.42
USP28-201ENST00000003302 ALG1Q9BT22 464 aa12.41□□□□□ -0.42
USP28-201ENST00000003302 CHMP4AQ9BY43 222 aa12.41□□□□□ -0.42
USP28-201ENST00000003302 ANO10Q9NW15 660 aa12.41□□□□□ -0.42
USP28-201ENST00000003302 CYP2D7A0A087X1C5 515 aa12.41□□□□□ -0.42
USP28-201ENST00000003302 SLC3A2P08195 630 aaKnown RBP12.41□□□□□ -0.42
USP28-201ENST00000003302 CEP57L1Q8IYX8 460 aa12.41□□□□□ -0.42
USP28-201ENST00000003302 KCNQ4P56696 695 aa12.41□□□□□ -0.42
USP28-201ENST00000003302 BRINP3Q76B58 766 aa12.41□□□□□ -0.42
USP28-201ENST00000003302 STAMQ92783 540 aa12.41□□□□□ -0.42
USP28-201ENST00000003302 ARMT1Q9H993 441 aa12.41□□□□□ -0.42
USP28-201ENST00000003302 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.41□□□□□ -0.422e-6■■■■□ 19.4
USP28-201ENST00000003302 CPLX1O14810 134 aa12.4□□□□□ -0.42
USP28-201ENST00000003302 IMMTQ16891 758 aaKnown RBP12.4□□□□□ -0.42
USP28-201ENST00000003302 SLC4A8Q2Y0W8 1093 aa12.4□□□□□ -0.42
USP28-201ENST00000003302 RRP12Q5JTH9 1297 aaKnown RBP12.4□□□□□ -0.42
USP28-201ENST00000003302 IGDCC4Q8TDY8 1250 aa12.4□□□□□ -0.42
USP28-201ENST00000003302 APPBP2Q92624 585 aa12.4□□□□□ -0.42
USP28-201ENST00000003302 PCDHA5Q9Y5H7 936 aa12.4□□□□□ -0.42
USP28-201ENST00000003302 KIF1AQ12756 1690 aa12.4□□□□□ -0.42
USP28-201ENST00000003302 DDX60Q8IY21 1712 aaKnown RBP12.4□□□□□ -0.42
USP28-201ENST00000003302 A0A087X0B3 334 aa12.4□□□□□ -0.42
USP28-201ENST00000003302 SMYD4Q8IYR2 804 aaPredicted RBP12.4□□□□□ -0.42
USP28-201ENST00000003302 DESI2Q9BSY9 194 aa12.4□□□□□ -0.42
USP28-201ENST00000003302 TNKS1BP1Q9C0C2 1729 aaKnown RBP12.4□□□□□ -0.42
USP28-201ENST00000003302 LAMB4A4D0S4 1761 aa12.4□□□□□ -0.42
USP28-201ENST00000003302 HMGB1P09429 215 aaKnown RBP12.4□□□□□ -0.42
USP28-201ENST00000003302 FANCCQ00597 558 aa12.4□□□□□ -0.42
USP28-201ENST00000003302 POLR3EQ9NVU0 708 aa12.4□□□□□ -0.42
USP28-201ENST00000003302 DDX41Q9UJV9 622 aaKnown RBP12.4□□□□□ -0.42
USP28-201ENST00000003302 ADD2P35612 726 aa12.4□□□□□ -0.43
USP28-201ENST00000003302 ADKP55263 362 aaKnown RBP12.4□□□□□ -0.43
USP28-201ENST00000003302 CCDC102BQ68D86 513 aa12.4□□□□□ -0.43
USP28-201ENST00000003302 XIRP1Q702N8 1843 aaKnown RBP12.39□□□□□ -0.43
USP28-201ENST00000003302 SHANK3Q9BYB0 1731 aa12.39□□□□□ -0.43
USP28-201ENST00000003302 SEC31AO94979 1220 aaKnown RBP12.39□□□□□ -0.43
USP28-201ENST00000003302 CDC25BP30305 580 aa12.39□□□□□ -0.43
USP28-201ENST00000003302 TAF7LQ5H9L4 462 aa12.39□□□□□ -0.43
USP28-201ENST00000003302 UTP14AQ9BVJ6 771 aaKnown RBP12.39□□□□□ -0.43
USP28-201ENST00000003302 ATG3Q9NT62 314 aa12.39□□□□□ -0.43
USP28-201ENST00000003302 TCRBV5S4A2TA0A5A2 114 aa12.39□□□□□ -0.43
USP28-201ENST00000003302 CCDC158Q5M9N0 1113 aa12.39□□□□□ -0.43
USP28-201ENST00000003302 TRIM65Q6PJ69 517 aa12.39□□□□□ -0.43
USP28-201ENST00000003302 LY9Q9HBG7 655 aa12.39□□□□□ -0.43
USP28-201ENST00000003302 PDE6AP16499 860 aa12.39□□□□□ -0.43
USP28-201ENST00000003302 IFIT5Q13325 482 aaKnown RBP12.39□□□□□ -0.43
USP28-201ENST00000003302 TMEM139Q8IV31 216 aa12.39□□□□□ -0.43
USP28-201ENST00000003302 NCOA7Q8NI08 942 aa12.39□□□□□ -0.43
USP28-201ENST00000003302 WDR24Q96S15 920 aa12.39□□□□□ -0.43
USP28-201ENST00000003302 PCDHB6Q9Y5E3 794 aa12.39□□□□□ -0.43
USP28-201ENST00000003302 RFX7Q2KHR2 1363 aa12.39□□□□□ -0.43
USP28-201ENST00000003302 A0A0G2JS52 829 aa12.38□□□□□ -0.43
USP28-201ENST00000003302 SH2B2O14492 632 aaPredicted RBP12.38□□□□□ -0.43
USP28-201ENST00000003302 PRDM1O75626 825 aa12.38□□□□□ -0.43
USP28-201ENST00000003302 NLRP10Q86W26 655 aa12.38□□□□□ -0.43
USP28-201ENST00000003302 ZNF396Q96N95 335 aaPredicted RBP12.38□□□□□ -0.43
USP28-201ENST00000003302 SLC26A6Q9BXS9 759 aa12.38□□□□□ -0.43
USP28-201ENST00000003302 MYH7P12883 1935 aa12.38□□□□□ -0.43
USP28-201ENST00000003302 UBR2Q8IWV8 1755 aa12.38□□□□□ -0.43
USP28-201ENST00000003302 METAP2P50579 478 aaKnown RBP eCLIP12.38□□□□□ -0.43
USP28-201ENST00000003302 RASGRF1Q13972 1273 aa12.38□□□□□ -0.43
USP28-201ENST00000003302 SDR42E1Q8WUS8 393 aa12.38□□□□□ -0.43
USP28-201ENST00000003302 HPSEQ9Y251 543 aa12.38□□□□□ -0.43
USP28-201ENST00000003302 WDR17Q8IZU2 1322 aa12.38□□□□□ -0.43
USP28-201ENST00000003302 CSF1RP07333 972 aa12.38□□□□□ -0.43
USP28-201ENST00000003302 SLFN14P0C7P3 912 aa12.38□□□□□ -0.43
USP28-201ENST00000003302 MTERF4Q7Z6M4 381 aaKnown RBP12.38□□□□□ -0.43
USP28-201ENST00000003302 RALYLQ86SE5 291 aaKnown RBP12.38□□□□□ -0.43
USP28-201ENST00000003302 DNAI1Q9UI46 699 aa12.38□□□□□ -0.43
USP28-201ENST00000003302 TNS3Q68CZ2 1445 aa12.38□□□□□ -0.43
USP28-201ENST00000003302 SLC39A14Q15043 492 aa12.38□□□□□ -0.43
USP28-201ENST00000003302 OSBPL5Q9H0X9 879 aaPredicted RBP12.38□□□□□ -0.43
USP28-201ENST00000003302 ZCCHC17Q9NP64 241 aaKnown RBP12.38□□□□□ -0.43
USP28-201ENST00000003302 SAMSN1Q9NSI8 373 aaKnown RBP12.38□□□□□ -0.43
USP28-201ENST00000003302 ANGEL1Q9UNK9 670 aaKnown RBP12.38□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms