RNA–Protein interactions for RNA: ENST00000637968.1

SCN1A-216, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,614 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-216ENST00000637968 FREM3P0C091 2139 aa4.68□□□□□ -1.66
SCN1A-216ENST00000637968 UTF1Q5T230 341 aa4.68□□□□□ -1.66
SCN1A-216ENST00000637968 C2orf82Q6UX34 121 aa4.68□□□□□ -1.66
SCN1A-216ENST00000637968 DLL3Q9NYJ7 618 aa4.68□□□□□ -1.66
SCN1A-216ENST00000637968 RAXQ9Y2V3 346 aa4.68□□□□□ -1.66
SCN1A-216ENST00000637968 SHISA9B4DS77 424 aa4.68□□□□□ -1.66
SCN1A-216ENST00000637968 K7EMI3 77 aa4.68□□□□□ -1.66
SCN1A-216ENST00000637968 TNFRSF13BO14836 293 aaPredicted RBP4.68□□□□□ -1.66
SCN1A-216ENST00000637968 NCR2O95944 276 aa4.68□□□□□ -1.66
SCN1A-216ENST00000637968 CISD3P0C7P0 127 aa4.68□□□□□ -1.66
SCN1A-216ENST00000637968 CD24P25063 80 aa4.68□□□□□ -1.66
SCN1A-216ENST00000637968 DSCR4P56555 118 aaPredicted RBP4.68□□□□□ -1.66
SCN1A-216ENST00000637968 VN1R4Q7Z5H5 301 aa4.68□□□□□ -1.66
SCN1A-216ENST00000637968 RND1Q92730 232 aa4.68□□□□□ -1.66
SCN1A-216ENST00000637968 PILRAQ9UKJ1 303 aa4.68□□□□□ -1.66
SCN1A-216ENST00000637968 ARHGAP21Q5T5U3 1957 aa4.68□□□□□ -1.66
SCN1A-216ENST00000637968 SPTA1P02549 2419 aa4.68□□□□□ -1.66
SCN1A-216ENST00000637968 ZFAND5O76080 213 aa4.68□□□□□ -1.66
SCN1A-216ENST00000637968 LTAP01374 205 aa4.68□□□□□ -1.66
SCN1A-216ENST00000637968 IFI27P40305 119 aaPredicted RBP4.68□□□□□ -1.66
SCN1A-216ENST00000637968 PCBD1P61457 104 aa4.68□□□□□ -1.66
SCN1A-216ENST00000637968 TREML4Q6UXN2 200 aa4.68□□□□□ -1.66
SCN1A-216ENST00000637968 NFE4Q86UQ8 179 aa4.68□□□□□ -1.66
SCN1A-216ENST00000637968 NABP1Q96AH0 204 aa4.68□□□□□ -1.66
SCN1A-216ENST00000637968 TMEM133Q9H2Q1 129 aa4.68□□□□□ -1.66
SCN1A-216ENST00000637968 KLF13Q9Y2Y9 288 aaPredicted RBP4.68□□□□□ -1.66
SCN1A-216ENST00000637968 SNRNP200O75643 2136 aaKnown RBP4.67□□□□□ -1.66
SCN1A-216ENST00000637968 RP1P56715 2156 aa4.67□□□□□ -1.66
SCN1A-216ENST00000637968 HAX1O00165 279 aa4.67□□□□□ -1.66
SCN1A-216ENST00000637968 MGST3O14880 152 aa4.67□□□□□ -1.66
SCN1A-216ENST00000637968 IGHV4-39P01824 125 aa4.67□□□□□ -1.66
SCN1A-216ENST00000637968 TMEM258P61165 79 aa4.67□□□□□ -1.66
SCN1A-216ENST00000637968 FAM120AOSQ5T036 256 aa4.67□□□□□ -1.66
SCN1A-216ENST00000637968 SRSF12Q8WXF0 261 aaKnown RBP4.67□□□□□ -1.66
SCN1A-216ENST00000637968 FAM168AQ92567 244 aa4.67□□□□□ -1.66
SCN1A-216ENST00000637968 MBD6Q96DN6 1003 aa4.67□□□□□ -1.66
SCN1A-216ENST00000637968 TM4SF19Q96DZ7 209 aa4.67□□□□□ -1.66
SCN1A-216ENST00000637968 C20orf173Q96LM9 149 aa4.67□□□□□ -1.66
SCN1A-216ENST00000637968 MYO16Q9Y6X6 1858 aa4.67□□□□□ -1.66
SCN1A-216ENST00000637968 ABCA7Q8IZY2 2146 aa4.67□□□□□ -1.66
SCN1A-216ENST00000637968 HEATR1Q9H583 2144 aaKnown RBP4.67□□□□□ -1.66
SCN1A-216ENST00000637968 IGKV1-8A0A0C4DH67 115 aa4.67□□□□□ -1.66
SCN1A-216ENST00000637968 C15orf62A8K5M9 175 aa4.67□□□□□ -1.66
SCN1A-216ENST00000637968 SLC25A48Q6ZT89 311 aaKnown RBP4.67□□□□□ -1.66
SCN1A-216ENST00000637968 ZNRF2Q8NHG8 242 aa4.67□□□□□ -1.66
SCN1A-216ENST00000637968 BEX4Q9NWD9 120 aaPredicted RBP4.67□□□□□ -1.66
SCN1A-216ENST00000637968 COL4A5P29400 1685 aa4.67□□□□□ -1.66
SCN1A-216ENST00000637968 M0R2P5 195 aa4.67□□□□□ -1.66
SCN1A-216ENST00000637968 RPL35AP18077 110 aaKnown RBP4.67□□□□□ -1.66
SCN1A-216ENST00000637968 ACP1P24666 158 aa4.67□□□□□ -1.66
SCN1A-216ENST00000637968 TNFAIP6P98066 277 aaPredicted RBP4.67□□□□□ -1.66
SCN1A-216ENST00000637968 TMEM170BQ5T4T1 132 aa4.67□□□□□ -1.66
SCN1A-216ENST00000637968 Q6ZS52 159 aa4.67□□□□□ -1.66
SCN1A-216ENST00000637968 UBALD1Q8TB05 177 aa4.67□□□□□ -1.66
SCN1A-216ENST00000637968 AJUBAQ96IF1 538 aa4.67□□□□□ -1.66
SCN1A-216ENST00000637968 GFRA4Q9GZZ7 299 aa4.67□□□□□ -1.66
SCN1A-216ENST00000637968 ATOX1O00244 68 aa4.66□□□□□ -1.66
SCN1A-216ENST00000637968 LEPP41159 167 aa4.66□□□□□ -1.66
SCN1A-216ENST00000637968 CT83Q5H943 113 aa4.66□□□□□ -1.66
SCN1A-216ENST00000637968 Q6ZNB5 142 aa4.66□□□□□ -1.66
SCN1A-216ENST00000637968 TRPT1Q86TN4 253 aaKnown RBP4.66□□□□□ -1.66
SCN1A-216ENST00000637968 MDP1Q86V88 176 aa4.66□□□□□ -1.66
SCN1A-216ENST00000637968 LINC00477Q96M19 166 aa4.66□□□□□ -1.66
SCN1A-216ENST00000637968 MRPL20Q9BYC9 149 aaKnown RBP4.66□□□□□ -1.66
SCN1A-216ENST00000637968 CALYQ9NYX4 217 aa4.66□□□□□ -1.66
SCN1A-216ENST00000637968 DKK2Q9UBU2 259 aa4.66□□□□□ -1.66
SCN1A-216ENST00000637968 APC2O95996 2303 aa4.66□□□□□ -1.66
SCN1A-216ENST00000637968 PGPA6NDG6 321 aa4.66□□□□□ -1.66
SCN1A-216ENST00000637968 LMO7DNF2Z398 122 aa4.66□□□□□ -1.66
SCN1A-216ENST00000637968 PRRG2O14669 202 aa4.66□□□□□ -1.66
SCN1A-216ENST00000637968 NDUFA3O95167 84 aa4.66□□□□□ -1.66
SCN1A-216ENST00000637968 COL9A1P20849 921 aa4.66□□□□□ -1.66
SCN1A-216ENST00000637968 RASL10AQ92737 203 aa4.66□□□□□ -1.66
SCN1A-216ENST00000637968 LINC00526Q96FQ7 95 aa4.66□□□□□ -1.66
SCN1A-216ENST00000637968 TRGV11A0A075B6L2 103 aa4.66□□□□□ -1.66
SCN1A-216ENST00000637968 ZNF815PA8K554 130 aa4.66□□□□□ -1.66
SCN1A-216ENST00000637968 M0R3E3 92 aa4.66□□□□□ -1.66
SCN1A-216ENST00000637968 NDUFS7O75251 213 aa4.66□□□□□ -1.66
SCN1A-216ENST00000637968 SUB1P53999 127 aaKnown RBP eCLIP4.66□□□□□ -1.66
SCN1A-216ENST00000637968 C10orf113Q5VZT2 155 aa4.66□□□□□ -1.66
SCN1A-216ENST00000637968 PCSK4Q6UW60 755 aa4.66□□□□□ -1.66
SCN1A-216ENST00000637968 GOLT1AQ6ZVE7 132 aa4.66□□□□□ -1.66
SCN1A-216ENST00000637968 DRAM1Q8N682 238 aa4.66□□□□□ -1.66
SCN1A-216ENST00000637968 SLC25A39Q9BZJ4 359 aaPredicted RBP4.66□□□□□ -1.66
SCN1A-216ENST00000637968 PRO0461Q9UI25 63 aa4.66□□□□□ -1.66
SCN1A-216ENST00000637968 LINC00527Q9UJ94 153 aa4.66□□□□□ -1.66
SCN1A-216ENST00000637968 TRIP6Q15654 476 aaKnown RBP4.66□□□□□ -1.66
SCN1A-216ENST00000637968 Q6ZQT7 251 aa4.66□□□□□ -1.66
SCN1A-216ENST00000637968 Q6ZS49 121 aa4.66□□□□□ -1.66
SCN1A-216ENST00000637968 DEFB124Q8NES8 71 aa4.66□□□□□ -1.66
SCN1A-216ENST00000637968 TMEM158Q8WZ71 300 aa4.66□□□□□ -1.66
SCN1A-216ENST00000637968 PLXNA1Q9UIW2 1896 aa4.65□□□□□ -1.66
SCN1A-216ENST00000637968 RBAKDNA6NC62 111 aa4.65□□□□□ -1.66
SCN1A-216ENST00000637968 NPIPB11E5RHQ5 1161 aa4.65□□□□□ -1.66
SCN1A-216ENST00000637968 GFRA3O60609 400 aa4.65□□□□□ -1.66
SCN1A-216ENST00000637968 DLX1P56177 255 aa4.65□□□□□ -1.66
SCN1A-216ENST00000637968 FXYD7P58549 80 aa4.65□□□□□ -1.66
SCN1A-216ENST00000637968 FGF12P61328 243 aa4.65□□□□□ -1.66
SCN1A-216ENST00000637968 MS4A18Q3C1V0 323 aa4.65□□□□□ -1.66
SCN1A-216ENST00000637968 GDF5OSQ5U4N7 250 aa4.65□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms