RNA–Protein interactions for RNA: ENST00000597423.1

TRIM28-209, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-209ENST00000597423 SEPSECSQ9HD40 501 aaKnown RBP11.75□□□□□ -0.53
TRIM28-209ENST00000597423 IGHV3-35A0A0C4DH35 117 aa11.74□□□□□ -0.53
TRIM28-209ENST00000597423 ZNF320A2RRD8 509 aa11.74□□□□□ -0.53
TRIM28-209ENST00000597423 I3L521 148 aa11.74□□□□□ -0.53
TRIM28-209ENST00000597423 TRBV12-3P01733 135 aa11.74□□□□□ -0.53
TRIM28-209ENST00000597423 SRSF2Q01130 221 aaKnown RBP11.74□□□□□ -0.53
TRIM28-209ENST00000597423 KHDC3LQ587J8 217 aa11.74□□□□□ -0.53
TRIM28-209ENST00000597423 PQLC2Q6ZP29 291 aa11.74□□□□□ -0.53
TRIM28-209ENST00000597423 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP11.74□□□□□ -0.53
TRIM28-209ENST00000597423 KLHL30-AS1Q8NEE0 82 aa11.74□□□□□ -0.53
TRIM28-209ENST00000597423 OR1N2Q8NGR9 330 aa11.74□□□□□ -0.53
TRIM28-209ENST00000597423 C20orf24Q9BUV8 137 aa11.74□□□□□ -0.53
TRIM28-209ENST00000597423 UFC1Q9Y3C8 167 aa11.74□□□□□ -0.53
TRIM28-209ENST00000597423 LINC01619G3V211 115 aa11.73□□□□□ -0.53
TRIM28-209ENST00000597423 K7EMT4 169 aa11.73□□□□□ -0.53
TRIM28-209ENST00000597423 STAG3L2P0CL84 134 aa11.73□□□□□ -0.53
TRIM28-209ENST00000597423 STAG3L3P0CL85 134 aa11.73□□□□□ -0.53
TRIM28-209ENST00000597423 BMI1P35226 326 aa11.73□□□□□ -0.53
TRIM28-209ENST00000597423 IL34Q6ZMJ4 242 aa11.73□□□□□ -0.53
TRIM28-209ENST00000597423 MIR17HGQ75NE6 70 aa11.73□□□□□ -0.53
TRIM28-209ENST00000597423 LYPD6BQ8NI32 183 aa11.73□□□□□ -0.53
TRIM28-209ENST00000597423 PCNPQ8WW12 178 aaKnown RBP11.73□□□□□ -0.53
TRIM28-209ENST00000597423 CITED2Q99967 270 aaPredicted RBP11.73□□□□□ -0.53
TRIM28-209ENST00000597423 SHANK2-AS3Q9BTD1 123 aa11.73□□□□□ -0.53
TRIM28-209ENST00000597423 SLC25A39Q9BZJ4 359 aaPredicted RBP11.73□□□□□ -0.53
TRIM28-209ENST00000597423 A0A1W2PS18 150 aa11.72□□□□□ -0.53
TRIM28-209ENST00000597423 IFNA1P01562 189 aa11.72□□□□□ -0.53
TRIM28-209ENST00000597423 TAGLN2P37802 199 aaKnown RBP11.72□□□□□ -0.53
TRIM28-209ENST00000597423 PSMB3P49720 205 aa11.72□□□□□ -0.53
TRIM28-209ENST00000597423 USF2Q15853 346 aaPredicted RBP11.72□□□□□ -0.53
TRIM28-209ENST00000597423 ZNF726P1Q15940 193 aa11.72□□□□□ -0.53
TRIM28-209ENST00000597423 C1orf194Q5T5A4 169 aa11.72□□□□□ -0.53
TRIM28-209ENST00000597423 C11orf44Q8N8P7 122 aa11.72□□□□□ -0.53
TRIM28-209ENST00000597423 MARC2Q969Z3 335 aa11.72□□□□□ -0.53
TRIM28-209ENST00000597423 GRAMD2BQ96HH9 432 aa11.72□□□□□ -0.53
TRIM28-209ENST00000597423 ZFAND3Q9H8U3 227 aa11.72□□□□□ -0.53
TRIM28-209ENST00000597423 TMEM167BQ9NRX6 74 aa11.72□□□□□ -0.53
TRIM28-209ENST00000597423 MED9Q9NWA0 146 aa11.72□□□□□ -0.53
TRIM28-209ENST00000597423 ZFHX3Q15911 3703 aa11.72□□□□□ -0.53
TRIM28-209ENST00000597423 LINC00862A6NCI5 91 aa11.71□□□□□ -0.53
TRIM28-209ENST00000597423 LGALS9O00182 355 aa11.71□□□□□ -0.53
TRIM28-209ENST00000597423 HMGB3O15347 200 aaKnown RBP11.71□□□□□ -0.53
TRIM28-209ENST00000597423 OR7C2O60412 319 aa11.71□□□□□ -0.53
TRIM28-209ENST00000597423 PMS2P11Q13670 270 aa11.71□□□□□ -0.53
TRIM28-209ENST00000597423 NDUFA11Q86Y39 141 aa11.71□□□□□ -0.53
TRIM28-209ENST00000597423 BPIFA4PQ86YQ2 179 aa11.71□□□□□ -0.53
TRIM28-209ENST00000597423 C1QL4Q86Z23 238 aa11.71□□□□□ -0.53
TRIM28-209ENST00000597423 IQCF2Q8IXL9 164 aa11.71□□□□□ -0.53
TRIM28-209ENST00000597423 OR11H1Q8NG94 326 aa11.71□□□□□ -0.53
TRIM28-209ENST00000597423 TMEM190Q8WZ59 177 aa11.71□□□□□ -0.53
TRIM28-209ENST00000597423 GPR82Q96P67 336 aa11.71□□□□□ -0.53
TRIM28-209ENST00000597423 UHRF2Q96PU4 802 aa11.71□□□□□ -0.53
TRIM28-209ENST00000597423 TMEM231Q9H6L2 316 aa11.71□□□□□ -0.53
TRIM28-209ENST00000597423 IGHV4OR15-8A0A075B7B6 117 aa11.7□□□□□ -0.54
TRIM28-209ENST00000597423 A0A087WW49 117 aa11.7□□□□□ -0.54
TRIM28-209ENST00000597423 A0A1B0GV50 99 aa11.7□□□□□ -0.54
TRIM28-209ENST00000597423 ZNF98A6NK75 572 aa11.7□□□□□ -0.54
TRIM28-209ENST00000597423 H3BRN7 92 aa11.7□□□□□ -0.54
TRIM28-209ENST00000597423 CRYBB3P26998 211 aa11.7□□□□□ -0.54
TRIM28-209ENST00000597423 HOXD3P31249 432 aaPredicted RBP11.7□□□□□ -0.54
TRIM28-209ENST00000597423 FGF8P55075 233 aaPredicted RBP11.7□□□□□ -0.54
TRIM28-209ENST00000597423 SPATA31B1PQ5VZV4 182 aa11.7□□□□□ -0.54
TRIM28-209ENST00000597423 REC114Q7Z4M0 266 aa11.7□□□□□ -0.54
TRIM28-209ENST00000597423 OR8I2Q8N0Y5 310 aa11.7□□□□□ -0.54
TRIM28-209ENST00000597423 PAXXQ9BUH6 204 aa11.7□□□□□ -0.54
TRIM28-209ENST00000597423 OR51M1Q9H341 326 aa11.7□□□□□ -0.54
TRIM28-209ENST00000597423 DAZ1Q9NQZ3 744 aaKnown RBP11.7□□□□□ -0.54
TRIM28-209ENST00000597423 TMEM14CQ9P0S9 112 aa11.7□□□□□ -0.54
TRIM28-209ENST00000597423 MAST4O15021 2626 aa11.7□□□□□ -0.54
TRIM28-209ENST00000597423 TRAV5A0A0B4J249 113 aa11.69□□□□□ -0.54
TRIM28-209ENST00000597423 A0A1W2PRX2 142 aa11.69□□□□□ -0.54
TRIM28-209ENST00000597423 ARL14EPLP0DKL9 152 aa11.69□□□□□ -0.54
TRIM28-209ENST00000597423 RPL7P18124 248 aaKnown RBP11.69□□□□□ -0.54
TRIM28-209ENST00000597423 GCHFRP30047 84 aa11.69□□□□□ -0.54
TRIM28-209ENST00000597423 KLF5Q13887 457 aaPredicted RBP11.69□□□□□ -0.54
TRIM28-209ENST00000597423 OR4F17Q8NGA8 305 aa11.69□□□□□ -0.54
TRIM28-209ENST00000597423 OR4F4Q96R69 305 aa11.69□□□□□ -0.54
TRIM28-209ENST00000597423 SLC25A2Q9BXI2 301 aa11.69□□□□□ -0.54
TRIM28-209ENST00000597423 MANBALQ9NQG1 85 aa11.69□□□□□ -0.54
TRIM28-209ENST00000597423 PEMTQ9UBM1 199 aa11.69□□□□□ -0.54
TRIM28-209ENST00000597423 IGHV3OR16-8A0A075B7F1 116 aa11.68□□□□□ -0.54
TRIM28-209ENST00000597423 RAB19A4D1S5 217 aa11.68□□□□□ -0.54
TRIM28-209ENST00000597423 M0QZ24 198 aa11.68□□□□□ -0.54
TRIM28-209ENST00000597423 CCL24O00175 119 aa11.68□□□□□ -0.54
TRIM28-209ENST00000597423 PEA15Q15121 130 aa11.68□□□□□ -0.54
TRIM28-209ENST00000597423 AWAT1Q58HT5 328 aa11.68□□□□□ -0.54
TRIM28-209ENST00000597423 UNQ9165/PRO28630Q6UXU0 137 aa11.68□□□□□ -0.54
TRIM28-209ENST00000597423 C8orf86Q6ZUL3 223 aa11.68□□□□□ -0.54
TRIM28-209ENST00000597423 SSX7Q7RTT5 188 aa11.68□□□□□ -0.54
TRIM28-209ENST00000597423 TMEM158Q8WZ71 300 aa11.68□□□□□ -0.54
TRIM28-209ENST00000597423 FAM167A-AS1Q96KT0 104 aa11.68□□□□□ -0.54
TRIM28-209ENST00000597423 ELOVL1Q9BW60 279 aa11.68□□□□□ -0.54
TRIM28-209ENST00000597423 SCRT1Q9BWW7 348 aa11.68□□□□□ -0.54
TRIM28-209ENST00000597423 GNG13Q9P2W3 67 aa11.68□□□□□ -0.54
TRIM28-209ENST00000597423 U3KQE9 123 aa11.68□□□□□ -0.54
TRIM28-209ENST00000597423 ZNF207O43670 478 aaKnown RBP11.67□□□□□ -0.54
TRIM28-209ENST00000597423 BUB3O43684 328 aa11.67□□□□□ -0.54
TRIM28-209ENST00000597423 HIST1H1EP10412 219 aaKnown RBP11.67□□□□□ -0.54
TRIM28-209ENST00000597423 MYCNOSP40205 109 aa11.67□□□□□ -0.54
TRIM28-209ENST00000597423 GALR1P47211 349 aa11.67□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 70 ms