RNA–Protein interactions for RNA: ENST00000585941.5

LIG3-205, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-205ENST00000585941 COL8A1P27658 744 aa11.11□□□□□ -0.63
LIG3-205ENST00000585941 RHOGP84095 191 aa11.11□□□□□ -0.63
LIG3-205ENST00000585941 ZNF600Q6ZNG1 722 aa11.11□□□□□ -0.63
LIG3-205ENST00000585941 PYGO2Q9BRQ0 406 aa11.11□□□□□ -0.63
LIG3-205ENST00000585941 TGIF2-C20orf24A0A0A6YYL0 155 aa11.1□□□□□ -0.63
LIG3-205ENST00000585941 TRAV41A0A0B4J266 112 aa11.1□□□□□ -0.63
LIG3-205ENST00000585941 J3QKU1 62 aa11.1□□□□□ -0.63
LIG3-205ENST00000585941 PEX7O00628 323 aa11.1□□□□□ -0.63
LIG3-205ENST00000585941 AMY1AP04745 511 aa11.1□□□□□ -0.63
LIG3-205ENST00000585941 IGF1P05019 195 aa11.1□□□□□ -0.63
LIG3-205ENST00000585941 KRTAP10-9P60411 292 aa11.1□□□□□ -0.63
LIG3-205ENST00000585941 RANP62826 216 aaKnown RBP11.1□□□□□ -0.63
LIG3-205ENST00000585941 C15orf32Q32M92 178 aa11.1□□□□□ -0.63
LIG3-205ENST00000585941 CENPWQ5EE01 88 aa11.1□□□□□ -0.63
LIG3-205ENST00000585941 TEX38Q6PEX7 206 aa11.1□□□□□ -0.63
LIG3-205ENST00000585941 OR4F17Q8NGA8 305 aa11.1□□□□□ -0.63
LIG3-205ENST00000585941 ZNF502Q8TBZ5 544 aa11.1□□□□□ -0.63
LIG3-205ENST00000585941 KMT2BQ9UMN6 2715 aaPredicted RBP11.1□□□□□ -0.63
LIG3-205ENST00000585941 TRBV7-1A0A0A6YYK4 115 aa11.09□□□□□ -0.63
LIG3-205ENST00000585941 FAM223BA6NKX1 122 aa11.09□□□□□ -0.63
LIG3-205ENST00000585941 BRI3O95415 125 aa11.09□□□□□ -0.63
LIG3-205ENST00000585941 TGFAP01135 160 aa11.09□□□□□ -0.63
LIG3-205ENST00000585941 AVPP01185 164 aa11.09□□□□□ -0.63
LIG3-205ENST00000585941 CTSGP08311 255 aa11.09□□□□□ -0.63
LIG3-205ENST00000585941 C19orf54Q5BKX5 351 aa11.09□□□□□ -0.63
LIG3-205ENST00000585941 Q5PR19 223 aa11.09□□□□□ -0.63
LIG3-205ENST00000585941 FAM223AQ8IWN6 122 aa11.09□□□□□ -0.63
LIG3-205ENST00000585941 C5orf17Q8NAS9 161 aa11.09□□□□□ -0.63
LIG3-205ENST00000585941 OR10G8Q8NGN5 311 aa11.09□□□□□ -0.63
LIG3-205ENST00000585941 BLNKQ8WV28 456 aa11.09□□□□□ -0.63
LIG3-205ENST00000585941 EEF1AKMT3Q96AZ1 226 aa11.09□□□□□ -0.63
LIG3-205ENST00000585941 OTORQ9NRC9 128 aa11.09□□□□□ -0.63
LIG3-205ENST00000585941 EPDR1Q9UM22 224 aa11.09□□□□□ -0.63
LIG3-205ENST00000585941 S4R3C0 116 aa11.09□□□□□ -0.63
LIG3-205ENST00000585941 CENPEQ02224 2701 aa11.08□□□□□ -0.64
LIG3-205ENST00000585941 PGPEP1LA6NFU8 196 aa11.08□□□□□ -0.64
LIG3-205ENST00000585941 OR2T8A6NH00 312 aa11.08□□□□□ -0.64
LIG3-205ENST00000585941 RNF223E7ERA6 249 aa11.08□□□□□ -0.64
LIG3-205ENST00000585941 G3V318 75 aa11.08□□□□□ -0.64
LIG3-205ENST00000585941 H3BUA1 57 aa11.08□□□□□ -0.64
LIG3-205ENST00000585941 IGHG2P01859 326 aa11.08□□□□□ -0.64
LIG3-205ENST00000585941 SLC25A5P05141 298 aaKnown RBP11.08□□□□□ -0.64
LIG3-205ENST00000585941 PLA2G2AP14555 144 aa11.08□□□□□ -0.64
LIG3-205ENST00000585941 FOXL1Q12952 345 aa11.08□□□□□ -0.64
LIG3-205ENST00000585941 LEMD1Q68G75 181 aa11.08□□□□□ -0.64
LIG3-205ENST00000585941 LYPD1Q8N2G4 141 aa11.08□□□□□ -0.64
LIG3-205ENST00000585941 SMIM12Q96EX1 92 aa11.08□□□□□ -0.64
LIG3-205ENST00000585941 CHD6Q8TD26 2715 aa11.08□□□□□ -0.64
LIG3-205ENST00000585941 PGPA6NDG6 321 aa11.08□□□□□ -0.64
LIG3-205ENST00000585941 BMPR1BO00238 502 aa11.08□□□□□ -0.64
LIG3-205ENST00000585941 GGCTO75223 188 aaKnown RBP11.08□□□□□ -0.64
LIG3-205ENST00000585941 S100A6P06703 90 aa11.08□□□□□ -0.64
LIG3-205ENST00000585941 IGF2BP2-AS1Q96M15 143 aa11.08□□□□□ -0.64
LIG3-205ENST00000585941 ATG101Q9BSB4 218 aa11.08□□□□□ -0.64
LIG3-205ENST00000585941 NAV2Q8IVL1 2488 aa11.07□□□□□ -0.64
LIG3-205ENST00000585941 FBN2P35556 2912 aa11.07□□□□□ -0.64
LIG3-205ENST00000585941 TRAV9-1A0A075B6T8 112 aa11.07□□□□□ -0.64
LIG3-205ENST00000585941 ZNF98A6NK75 572 aa11.07□□□□□ -0.64
LIG3-205ENST00000585941 LINC01548A6NM66 108 aa11.07□□□□□ -0.64
LIG3-205ENST00000585941 K7EN84 100 aa11.07□□□□□ -0.64
LIG3-205ENST00000585941 GCGP01275 180 aa11.07□□□□□ -0.64
LIG3-205ENST00000585941 IGHV4-31P0DP07 118 aa11.07□□□□□ -0.64
LIG3-205ENST00000585941 RAB9AP51151 201 aa11.07□□□□□ -0.64
LIG3-205ENST00000585941 ATP5G2Q06055 141 aa11.07□□□□□ -0.64
LIG3-205ENST00000585941 USF2Q15853 346 aaPredicted RBP11.07□□□□□ -0.64
LIG3-205ENST00000585941 LY6EQ16553 131 aa11.07□□□□□ -0.64
LIG3-205ENST00000585941 ZFP82Q8N141 532 aa11.07□□□□□ -0.64
LIG3-205ENST00000585941 Q9H3A6 140 aa11.07□□□□□ -0.64
LIG3-205ENST00000585941 SRD5A3Q9H8P0 318 aa11.07□□□□□ -0.64
LIG3-205ENST00000585941 AURKAIP1Q9NWT8 199 aaPredicted RBP11.07□□□□□ -0.64
LIG3-205ENST00000585941 RABAC1Q9UI14 185 aa11.07□□□□□ -0.64
LIG3-205ENST00000585941 ZNF580Q9UK33 172 aa11.07□□□□□ -0.64
LIG3-205ENST00000585941 KLF12Q9Y4X4 402 aa11.07□□□□□ -0.64
LIG3-205ENST00000585941 CELSR2Q9HCU4 2923 aa11.07□□□□□ -0.64
LIG3-205ENST00000585941 SH2D7A6NKC9 451 aaPredicted RBP11.06□□□□□ -0.64
LIG3-205ENST00000585941 PPP5D1E7EU14 171 aa11.06□□□□□ -0.64
LIG3-205ENST00000585941 IGHV3-23P01764 117 aa11.06□□□□□ -0.64
LIG3-205ENST00000585941 IGLC2P0DOY2 106 aa11.06□□□□□ -0.64
LIG3-205ENST00000585941 PDE6HQ13956 83 aa11.06□□□□□ -0.64
LIG3-205ENST00000585941 TMEM183BQ1AE95 376 aa11.06□□□□□ -0.64
LIG3-205ENST00000585941 C9orf152Q5JTZ5 239 aa11.06□□□□□ -0.64
LIG3-205ENST00000585941 C9orf139Q6ZV77 190 aa11.06□□□□□ -0.64
LIG3-205ENST00000585941 OR5R1Q8NH85 324 aa11.06□□□□□ -0.64
LIG3-205ENST00000585941 OSTCQ9NRP0 149 aa11.06□□□□□ -0.64
LIG3-205ENST00000585941 ZNF586Q9NXT0 402 aa11.06□□□□□ -0.64
LIG3-205ENST00000585941 CR1P17927 2039 aa11.06□□□□□ -0.64
LIG3-205ENST00000585941 POLQO75417 2590 aa11.05□□□□□ -0.64
LIG3-205ENST00000585941 PRRC2AP48634 2157 aaKnown RBP11.05□□□□□ -0.64
LIG3-205ENST00000585941 TRBV19A0A075B6N1 114 aa11.05□□□□□ -0.64
LIG3-205ENST00000585941 AP4M1O00189 453 aa11.05□□□□□ -0.64
LIG3-205ENST00000585941 ISLRO14498 428 aa11.05□□□□□ -0.64
LIG3-205ENST00000585941 TYMSP04818 313 aa11.05□□□□□ -0.64
LIG3-205ENST00000585941 RPL7P18124 248 aaKnown RBP11.05□□□□□ -0.64
LIG3-205ENST00000585941 GPR183P32249 361 aa11.05□□□□□ -0.64
LIG3-205ENST00000585941 ADMP35318 185 aa11.05□□□□□ -0.64
LIG3-205ENST00000585941 ERVFC1-1P60608 527 aa11.05□□□□□ -0.64
LIG3-205ENST00000585941 UBE2G1P62253 170 aa11.05□□□□□ -0.64
LIG3-205ENST00000585941 FMC1Q96HJ9 113 aa11.05□□□□□ -0.64
LIG3-205ENST00000585941 CHRDL1Q9BU40 450 aa11.05□□□□□ -0.64
LIG3-205ENST00000585941 MAP1AP78559 2803 aaPredicted RBP11.05□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms