RNA–Protein interactions for RNA: ENST00000572259.1

VPS53-212, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 683 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-212ENST00000572259 TIMM50Q3ZCQ8 353 aa4.59□□□□□ -1.67
VPS53-212ENST00000572259 C18orf65Q6ZTR6 163 aa4.59□□□□□ -1.67
VPS53-212ENST00000572259 TCF23Q7RTU1 214 aa4.59□□□□□ -1.67
VPS53-212ENST00000572259 NOTCH2NLQ7Z3S9 236 aa4.59□□□□□ -1.67
VPS53-212ENST00000572259 NR2C2APQ86WQ0 139 aa4.59□□□□□ -1.67
VPS53-212ENST00000572259 LYPD6Q86Y78 171 aa4.59□□□□□ -1.67
VPS53-212ENST00000572259 C6orf223Q8N319 242 aa4.59□□□□□ -1.67
VPS53-212ENST00000572259 TAF15Q92804 592 aaKnown RBP eCLIP4.59□□□□□ -1.67
VPS53-212ENST00000572259 FAM3DQ96BQ1 224 aa4.59□□□□□ -1.67
VPS53-212ENST00000572259 GALMQ96C23 342 aa4.59□□□□□ -1.67
VPS53-212ENST00000572259 KIR2DL4Q99706 377 aa4.59□□□□□ -1.67
VPS53-212ENST00000572259 C16orf95Q9H693 158 aa4.59□□□□□ -1.67
VPS53-212ENST00000572259 C14orf166Q9Y224 244 aaKnown RBP4.59□□□□□ -1.67
VPS53-212ENST00000572259 TENM1Q9UKZ4 2725 aa4.58□□□□□ -1.68
VPS53-212ENST00000572259 TMEM14DPA8MWL7 114 aa4.58□□□□□ -1.68
VPS53-212ENST00000572259 MMP23AO75900 390 aa4.58□□□□□ -1.68
VPS53-212ENST00000572259 MOSP00540 346 aa4.58□□□□□ -1.68
VPS53-212ENST00000572259 IGLV1-47P01700 117 aa4.58□□□□□ -1.68
VPS53-212ENST00000572259 EIF4EP06730 217 aaKnown RBP4.58□□□□□ -1.68
VPS53-212ENST00000572259 OR5H8P0DN80 308 aa4.58□□□□□ -1.68
VPS53-212ENST00000572259 IGLL1P15814 213 aa4.58□□□□□ -1.68
VPS53-212ENST00000572259 MDKP21741 143 aaPredicted RBP4.58□□□□□ -1.68
VPS53-212ENST00000572259 PAX6P26367 422 aa4.58□□□□□ -1.68
VPS53-212ENST00000572259 VEGFCP49767 419 aa4.58□□□□□ -1.68
VPS53-212ENST00000572259 RAB5BP61020 215 aa4.58□□□□□ -1.68
VPS53-212ENST00000572259 RBX1P62877 108 aa4.58□□□□□ -1.68
VPS53-212ENST00000572259 PRR3P79522 188 aaKnown RBP4.58□□□□□ -1.68
VPS53-212ENST00000572259 ZNF266Q14584 549 aa4.58□□□□□ -1.68
VPS53-212ENST00000572259 SSX1Q16384 188 aa4.58□□□□□ -1.68
VPS53-212ENST00000572259 MOB1BQ7L9L4 216 aa4.58□□□□□ -1.68
VPS53-212ENST00000572259 CLVS1Q8IUQ0 354 aaPredicted RBP4.58□□□□□ -1.68
VPS53-212ENST00000572259 LINC00311Q8N616 119 aa4.58□□□□□ -1.68
VPS53-212ENST00000572259 OR51S1Q8NGJ8 323 aa4.58□□□□□ -1.68
VPS53-212ENST00000572259 OR4P4Q8NGL7 312 aa4.58□□□□□ -1.68
VPS53-212ENST00000572259 OR4K15Q8NH41 348 aa4.58□□□□□ -1.68
VPS53-212ENST00000572259 LINC01006Q8NI28 216 aa4.58□□□□□ -1.68
VPS53-212ENST00000572259 BLNKQ8WV28 456 aa4.58□□□□□ -1.68
VPS53-212ENST00000572259 MARC2Q969Z3 335 aa4.58□□□□□ -1.68
VPS53-212ENST00000572259 MIXL1Q9H2W2 232 aa4.58□□□□□ -1.68
VPS53-212ENST00000572259 TAF9BQ9HBM6 251 aa4.58□□□□□ -1.68
VPS53-212ENST00000572259 ZNF286AQ9HBT8 521 aa4.58□□□□□ -1.68
VPS53-212ENST00000572259 PRELID3BQ9Y3B1 194 aa4.58□□□□□ -1.68
VPS53-212ENST00000572259 TET2Q6N021 2002 aaPredicted RBP4.58□□□□□ -1.68
VPS53-212ENST00000572259 NOTCH3Q9UM47 2321 aa4.57□□□□□ -1.68
VPS53-212ENST00000572259 DNHD1Q96M86 4753 aa4.57□□□□□ -1.68
VPS53-212ENST00000572259 A0A087WW49 117 aa4.57□□□□□ -1.68
VPS53-212ENST00000572259 FAM172BPA6NC97 362 aa4.57□□□□□ -1.68
VPS53-212ENST00000572259 A6NDX4 124 aa4.57□□□□□ -1.68
VPS53-212ENST00000572259 IFITM5A6NNB3 132 aa4.57□□□□□ -1.68
VPS53-212ENST00000572259 BMPR1BO00238 502 aa4.57□□□□□ -1.68
VPS53-212ENST00000572259 HBZP02008 142 aa4.57□□□□□ -1.68
VPS53-212ENST00000572259 TALDO1P37837 337 aa4.57□□□□□ -1.68
VPS53-212ENST00000572259 RAB13P51153 203 aa4.57□□□□□ -1.68
VPS53-212ENST00000572259 HES1Q14469 280 aa4.57□□□□□ -1.68
VPS53-212ENST00000572259 NEDD8Q15843 81 aa4.57□□□□□ -1.68
VPS53-212ENST00000572259 PRSS8Q16651 343 aa4.57□□□□□ -1.68
VPS53-212ENST00000572259 TTC32Q5I0X7 151 aa4.57□□□□□ -1.68
VPS53-212ENST00000572259 OR10K2Q6IF99 312 aa4.57□□□□□ -1.68
VPS53-212ENST00000572259 SFXN4Q6P4A7 337 aa4.57□□□□□ -1.68
VPS53-212ENST00000572259 C6orf201Q7Z4U5 140 aa4.57□□□□□ -1.68
VPS53-212ENST00000572259 OR1P1Q8NH06 330 aa4.57□□□□□ -1.68
VPS53-212ENST00000572259 OR4X1Q8NH49 305 aa4.57□□□□□ -1.68
VPS53-212ENST00000572259 PTX4Q96A99 478 aa4.57□□□□□ -1.68
VPS53-212ENST00000572259 CMSS1Q9BQ75 279 aaKnown RBP4.57□□□□□ -1.68
VPS53-212ENST00000572259 LPAR5Q9H1C0 372 aa4.57□□□□□ -1.68
VPS53-212ENST00000572259 TXNL4BQ9NX01 149 aaKnown RBP4.57□□□□□ -1.68
VPS53-212ENST00000572259 DOK5Q9P104 306 aa4.57□□□□□ -1.68
VPS53-212ENST00000572259 JPT1Q9UK76 154 aa4.57□□□□□ -1.68
VPS53-212ENST00000572259 UFC1Q9Y3C8 167 aa4.57□□□□□ -1.68
VPS53-212ENST00000572259 NBEAL1Q6ZS30 2694 aa4.56□□□□□ -1.68
VPS53-212ENST00000572259 ANK2Q01484 3957 aa4.56□□□□□ -1.68
VPS53-212ENST00000572259 IGHV1OR15-1A0A075B7D0 117 aa4.56□□□□□ -1.68
VPS53-212ENST00000572259 TRBV6-6A0A0A6YYG2 114 aa4.56□□□□□ -1.68
VPS53-212ENST00000572259 IGHV3-43A0A0B4J1X8 118 aa4.56□□□□□ -1.68
VPS53-212ENST00000572259 A0A0U1RQV1 116 aa4.56□□□□□ -1.68
VPS53-212ENST00000572259 LY6LH3BQJ8 138 aa4.56□□□□□ -1.68
VPS53-212ENST00000572259 ARPC5O15511 151 aa4.56□□□□□ -1.68
VPS53-212ENST00000572259 SOCS1O15524 211 aa4.56□□□□□ -1.68
VPS53-212ENST00000572259 PLXNB1O43157 2135 aa4.56□□□□□ -1.68
VPS53-212ENST00000572259 YPEL1O60688 119 aa4.56□□□□□ -1.68
VPS53-212ENST00000572259 MED6O75586 246 aa4.56□□□□□ -1.68
VPS53-212ENST00000572259 IGHV3-7P01780 117 aa4.56□□□□□ -1.68
VPS53-212ENST00000572259 GIPP09681 153 aaPredicted RBP4.56□□□□□ -1.68
VPS53-212ENST00000572259 IGHV3-43DP0DP04 118 aa4.56□□□□□ -1.68
VPS53-212ENST00000572259 ZBTB25P24278 435 aa4.56□□□□□ -1.68
VPS53-212ENST00000572259 SLC6A1P30531 599 aa4.56□□□□□ -1.68
VPS53-212ENST00000572259 RCVRNP35243 200 aa4.56□□□□□ -1.68
VPS53-212ENST00000572259 VDAC2P45880 294 aaPredicted RBP4.56□□□□□ -1.68
VPS53-212ENST00000572259 TCTAP57738 103 aa4.56□□□□□ -1.68
VPS53-212ENST00000572259 HBG1P69891 147 aa4.56□□□□□ -1.68
VPS53-212ENST00000572259 HBG2P69892 147 aa4.56□□□□□ -1.68
VPS53-212ENST00000572259 QRFPP83859 136 aa4.56□□□□□ -1.68
VPS53-212ENST00000572259 ZNF816Q0VGE8 651 aaPredicted RBP4.56□□□□□ -1.68
VPS53-212ENST00000572259 ARFRP1Q13795 201 aa4.56□□□□□ -1.68
VPS53-212ENST00000572259 MORN2Q502X0 79 aa4.56□□□□□ -1.68
VPS53-212ENST00000572259 DYNAPQ8N1N2 210 aa4.56□□□□□ -1.68
VPS53-212ENST00000572259 OR1L8Q8NGR8 309 aa4.56□□□□□ -1.68
VPS53-212ENST00000572259 OR2T10Q8NGZ9 312 aa4.56□□□□□ -1.68
VPS53-212ENST00000572259 MRPL30Q8TCC3 161 aaKnown RBP4.56□□□□□ -1.68
VPS53-212ENST00000572259 LEAP2Q969E1 77 aa4.56□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms