RNA–Protein interactions for RNA: ENST00000570062.1

VPS39-213, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 842 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-213ENST00000570062 WFDC11Q8NEX6 87 aa6.24□□□□□ -1.41
VPS39-213ENST00000570062 OR1B1Q8NGR6 318 aa6.24□□□□□ -1.41
VPS39-213ENST00000570062 ZNF502Q8TBZ5 544 aa6.24□□□□□ -1.41
VPS39-213ENST00000570062 TVP23CQ96ET8 276 aa6.24□□□□□ -1.41
VPS39-213ENST00000570062 GPR82Q96P67 336 aa6.24□□□□□ -1.41
VPS39-213ENST00000570062 RARRES2Q99969 163 aa6.24□□□□□ -1.41
VPS39-213ENST00000570062 PAXXQ9BUH6 204 aa6.24□□□□□ -1.41
VPS39-213ENST00000570062 KRTAP4-9Q9BYQ8 210 aa6.24□□□□□ -1.41
VPS39-213ENST00000570062 TMEM231Q9H6L2 316 aa6.24□□□□□ -1.41
VPS39-213ENST00000570062 TUBA4BQ9H853 241 aa6.24□□□□□ -1.41
VPS39-213ENST00000570062 TMEM242Q9NWH2 141 aa6.24□□□□□ -1.41
VPS39-213ENST00000570062 MRPL27Q9P0M9 148 aaKnown RBP6.24□□□□□ -1.41
VPS39-213ENST00000570062 DMRT1Q9Y5R6 373 aa6.24□□□□□ -1.41
VPS39-213ENST00000570062 CXorf65A6NEN9 183 aa6.23□□□□□ -1.41
VPS39-213ENST00000570062 ZNF727A8MUV8 499 aa6.23□□□□□ -1.41
VPS39-213ENST00000570062 IGKV1-17P01599 117 aa6.23□□□□□ -1.41
VPS39-213ENST00000570062 TRGV3P03979 118 aa6.23□□□□□ -1.41
VPS39-213ENST00000570062 HIST1H1EP10412 219 aaKnown RBP6.23□□□□□ -1.41
VPS39-213ENST00000570062 CD81P60033 236 aa6.23□□□□□ -1.41
VPS39-213ENST00000570062 UBE2L3P68036 154 aaKnown RBP6.23□□□□□ -1.41
VPS39-213ENST00000570062 TMEM241Q24JQ0 296 aa6.23□□□□□ -1.41
VPS39-213ENST00000570062 TIGITQ495A1 244 aa6.23□□□□□ -1.41
VPS39-213ENST00000570062 GCSAMLQ5JQS6 135 aa6.23□□□□□ -1.41
VPS39-213ENST00000570062 C1orf194Q5T5A4 169 aa6.23□□□□□ -1.41
VPS39-213ENST00000570062 MIR17HGQ75NE6 70 aa6.23□□□□□ -1.41
VPS39-213ENST00000570062 ZNF491Q8N8L2 437 aa6.23□□□□□ -1.41
VPS39-213ENST00000570062 CLRN3Q8NCR9 226 aa6.23□□□□□ -1.41
VPS39-213ENST00000570062 OR4F17Q8NGA8 305 aa6.23□□□□□ -1.41
VPS39-213ENST00000570062 OR5AU1Q8NGC0 362 aa6.23□□□□□ -1.41
VPS39-213ENST00000570062 OR4F5Q8NH21 305 aa6.23□□□□□ -1.41
VPS39-213ENST00000570062 HIST1H2BAQ96A08 127 aa6.23□□□□□ -1.41
VPS39-213ENST00000570062 RNF125Q96EQ8 232 aa6.23□□□□□ -1.41
VPS39-213ENST00000570062 OR4F4Q96R69 305 aa6.23□□□□□ -1.41
VPS39-213ENST00000570062 JMJD8Q96S16 334 aa6.23□□□□□ -1.41
VPS39-213ENST00000570062 CTDSP1Q9GZU7 261 aa6.23□□□□□ -1.41
VPS39-213ENST00000570062 SMCO4Q9NRQ5 59 aa6.23□□□□□ -1.41
VPS39-213ENST00000570062 CLEC5AQ9NY25 188 aa6.23□□□□□ -1.41
VPS39-213ENST00000570062 DOK5Q9P104 306 aa6.23□□□□□ -1.41
VPS39-213ENST00000570062 NAT8Q9UHE5 227 aa6.23□□□□□ -1.41
VPS39-213ENST00000570062 RABAC1Q9UI14 185 aa6.23□□□□□ -1.41
VPS39-213ENST00000570062 LY96Q9Y6Y9 160 aa6.23□□□□□ -1.41
VPS39-213ENST00000570062 DCHS2Q6V1P9 2916 aa6.22□□□□□ -1.41
VPS39-213ENST00000570062 A0A087WWC5 75 aa6.22□□□□□ -1.41
VPS39-213ENST00000570062 FBLL1A6NHQ2 334 aaKnown RBP6.22□□□□□ -1.41
VPS39-213ENST00000570062 FAM74A7A6NL05 159 aa6.22□□□□□ -1.41
VPS39-213ENST00000570062 C9JQL5 133 aa6.22□□□□□ -1.41
VPS39-213ENST00000570062 H3BQ15 152 aa6.22□□□□□ -1.41
VPS39-213ENST00000570062 CLDN34H7C241 214 aa6.22□□□□□ -1.41
VPS39-213ENST00000570062 M0R036 132 aa6.22□□□□□ -1.41
VPS39-213ENST00000570062 PPP1R2P9O14990 202 aa6.22□□□□□ -1.41
VPS39-213ENST00000570062 TGOLN2O43493 480 aa6.22□□□□□ -1.41
VPS39-213ENST00000570062 IGHV4-59P01825 116 aa6.22□□□□□ -1.41
VPS39-213ENST00000570062 IGHG4P01861 327 aa6.22□□□□□ -1.41
VPS39-213ENST00000570062 CLEC3BP05452 202 aa6.22□□□□□ -1.41
VPS39-213ENST00000570062 ELANEP08246 267 aa6.22□□□□□ -1.41
VPS39-213ENST00000570062 CTSGP08311 255 aa6.22□□□□□ -1.41
VPS39-213ENST00000570062 RPL7P18124 248 aaKnown RBP6.22□□□□□ -1.41
VPS39-213ENST00000570062 GATA2P23769 480 aaPredicted RBP6.22□□□□□ -1.41
VPS39-213ENST00000570062 PPIFP30405 207 aaKnown RBP6.22□□□□□ -1.41
VPS39-213ENST00000570062 BMI1P35226 326 aa6.22□□□□□ -1.41
VPS39-213ENST00000570062 LYZP61626 148 aa6.22□□□□□ -1.41
VPS39-213ENST00000570062 PDE6HQ13956 83 aa6.22□□□□□ -1.41
VPS39-213ENST00000570062 ZNF124Q15973 351 aa6.22□□□□□ -1.41
VPS39-213ENST00000570062 TEX38Q6PEX7 206 aa6.22□□□□□ -1.41
VPS39-213ENST00000570062 PATE2Q6UY27 113 aa6.22□□□□□ -1.41
VPS39-213ENST00000570062 SSX7Q7RTT5 188 aa6.22□□□□□ -1.41
VPS39-213ENST00000570062 CYB561D1Q8N8Q1 229 aa6.22□□□□□ -1.41
VPS39-213ENST00000570062 MAPK1IP1LQ8NDC0 245 aa6.22□□□□□ -1.41
VPS39-213ENST00000570062 C11orf52Q96A22 123 aa6.22□□□□□ -1.41
VPS39-213ENST00000570062 BTF3L4Q96K17 158 aa6.22□□□□□ -1.41
VPS39-213ENST00000570062 SMIM7Q9BQ49 75 aa6.22□□□□□ -1.41
VPS39-213ENST00000570062 SHANK2-AS3Q9BTD1 123 aa6.22□□□□□ -1.41
VPS39-213ENST00000570062 SLC25A39Q9BZJ4 359 aaPredicted RBP6.22□□□□□ -1.41
VPS39-213ENST00000570062 GSX1Q9H4S2 264 aaPredicted RBP6.22□□□□□ -1.41
VPS39-213ENST00000570062 BIN3Q9NQY0 253 aa6.22□□□□□ -1.41
VPS39-213ENST00000570062 MRPL36Q9P0J6 103 aaKnown RBP6.22□□□□□ -1.41
VPS39-213ENST00000570062 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP6.21□□□□□ -1.42
VPS39-213ENST00000570062 IGHV3-21A0A0B4J1V1 117 aa6.21□□□□□ -1.42
VPS39-213ENST00000570062 SERTM2A0A1B0GWG4 89 aa6.21□□□□□ -1.42
VPS39-213ENST00000570062 A0A1W2PS18 150 aa6.21□□□□□ -1.42
VPS39-213ENST00000570062 G3V318 75 aa6.21□□□□□ -1.42
VPS39-213ENST00000570062 K7EQM0 130 aa6.21□□□□□ -1.42
VPS39-213ENST00000570062 ZNF253O75346 499 aa6.21□□□□□ -1.42
VPS39-213ENST00000570062 IGHV3-48P01763 117 aa6.21□□□□□ -1.42
VPS39-213ENST00000570062 MT-ND4LP03901 98 aa6.21□□□□□ -1.42
VPS39-213ENST00000570062 IL4P05112 153 aa6.21□□□□□ -1.42
VPS39-213ENST00000570062 NBEAP1P0C6P0 100 aa6.21□□□□□ -1.42
VPS39-213ENST00000570062 CD99P14209 185 aa6.21□□□□□ -1.42
VPS39-213ENST00000570062 ADCYAP1P18509 176 aa6.21□□□□□ -1.42
VPS39-213ENST00000570062 TPPP2P59282 170 aa6.21□□□□□ -1.42
VPS39-213ENST00000570062 TAS2R60P59551 318 aa6.21□□□□□ -1.42
VPS39-213ENST00000570062 BLCAPP62952 87 aa6.21□□□□□ -1.42
VPS39-213ENST00000570062 PSG9Q00887 426 aa6.21□□□□□ -1.42
VPS39-213ENST00000570062 FOXE3Q13461 319 aa6.21□□□□□ -1.42
VPS39-213ENST00000570062 SAMD13Q5VXD3 122 aa6.21□□□□□ -1.42
VPS39-213ENST00000570062 WFDC3Q8IUB2 231 aa6.21□□□□□ -1.42
VPS39-213ENST00000570062 BCL6BQ8N143 479 aaPredicted RBP6.21□□□□□ -1.42
VPS39-213ENST00000570062 Q8N2B8 174 aa6.21□□□□□ -1.42
VPS39-213ENST00000570062 ZNF418Q8TF45 676 aaPredicted RBP6.21□□□□□ -1.42
VPS39-213ENST00000570062 SMIM12Q96EX1 92 aa6.21□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms