RNA–Protein interactions for RNA: ENST00000563984.1

VPS35-205, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 775 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-205ENST00000563984 PLCH1Q4KWH8 1693 aa3.93□□□□□ -1.78
VPS35-205ENST00000563984 TDRD15B5MCY1 1934 aaKnown RBP3.93□□□□□ -1.78
VPS35-205ENST00000563984 PHRF1Q9P1Y6 1649 aaKnown RBP3.92□□□□□ -1.78
VPS35-205ENST00000563984 MYLKQ15746 1914 aa3.92□□□□□ -1.78
VPS35-205ENST00000563984 TRAV14DV4A0A0A6YYC5 116 aa3.92□□□□□ -1.78
VPS35-205ENST00000563984 TRAV8-1A0A0A6YYK1 113 aa3.92□□□□□ -1.78
VPS35-205ENST00000563984 IGHV1-58A0A0C4DH39 117 aa3.92□□□□□ -1.78
VPS35-205ENST00000563984 ZFP92A6NM28 416 aa3.92□□□□□ -1.78
VPS35-205ENST00000563984 A8MWL6 223 aa3.92□□□□□ -1.78
VPS35-205ENST00000563984 FAM72CH0Y354 149 aa3.92□□□□□ -1.78
VPS35-205ENST00000563984 H3BP45 60 aa3.92□□□□□ -1.78
VPS35-205ENST00000563984 SSSCA1O60232 199 aa3.92□□□□□ -1.78
VPS35-205ENST00000563984 ATP1B1P05026 303 aa3.92□□□□□ -1.78
VPS35-205ENST00000563984 CD55P08174 381 aa3.92□□□□□ -1.78
VPS35-205ENST00000563984 HOXB7P09629 217 aa3.92□□□□□ -1.78
VPS35-205ENST00000563984 PIPP12273 146 aaPredicted RBP3.92□□□□□ -1.78
VPS35-205ENST00000563984 CBLN1P23435 193 aa3.92□□□□□ -1.78
VPS35-205ENST00000563984 WFDC2Q14508 124 aa3.92□□□□□ -1.78
VPS35-205ENST00000563984 CDK5R1Q15078 307 aa3.92□□□□□ -1.78
VPS35-205ENST00000563984 IGFBP7Q16270 282 aa3.92□□□□□ -1.78
VPS35-205ENST00000563984 LGALS9BQ3B8N2 356 aa3.92□□□□□ -1.78
VPS35-205ENST00000563984 LINC00303Q3SY05 128 aa3.92□□□□□ -1.78
VPS35-205ENST00000563984 SP6Q3SY56 376 aa3.92□□□□□ -1.78
VPS35-205ENST00000563984 NMSQ5H8A3 153 aa3.92□□□□□ -1.78
VPS35-205ENST00000563984 FAM72AQ5TYM5 149 aa3.92□□□□□ -1.78
VPS35-205ENST00000563984 FAM72DQ6L9T8 149 aa3.92□□□□□ -1.78
VPS35-205ENST00000563984 TMEM136Q6ZRR5 245 aa3.92□□□□□ -1.78
VPS35-205ENST00000563984 Q75L30 129 aa3.92□□□□□ -1.78
VPS35-205ENST00000563984 ATP5L2Q7Z4Y8 100 aa3.92□□□□□ -1.78
VPS35-205ENST00000563984 NFE4Q86UQ8 179 aa3.92□□□□□ -1.78
VPS35-205ENST00000563984 FAM72BQ86X60 149 aa3.92□□□□□ -1.78
VPS35-205ENST00000563984 OR52N5Q8NH56 324 aa3.92□□□□□ -1.78
VPS35-205ENST00000563984 FAM213BQ8TBF2 198 aa3.92□□□□□ -1.78
VPS35-205ENST00000563984 ZC2HC1AQ96GY0 325 aa3.92□□□□□ -1.78
VPS35-205ENST00000563984 PRSS27Q9BQR3 290 aa3.92□□□□□ -1.78
VPS35-205ENST00000563984 SHANK2-AS3Q9BTD1 123 aa3.92□□□□□ -1.78
VPS35-205ENST00000563984 SCRT1Q9BWW7 348 aa3.92□□□□□ -1.78
VPS35-205ENST00000563984 SRXN1Q9BYN0 137 aa3.92□□□□□ -1.78
VPS35-205ENST00000563984 ZNF581Q9P0T4 197 aa3.92□□□□□ -1.78
VPS35-205ENST00000563984 CKLFQ9UBR5 152 aa3.92□□□□□ -1.78
VPS35-205ENST00000563984 C19orf25Q9UFG5 118 aaPredicted RBP3.92□□□□□ -1.78
VPS35-205ENST00000563984 ANAPC10Q9UM13 185 aa3.92□□□□□ -1.78
VPS35-205ENST00000563984 HES2Q9Y543 173 aa3.92□□□□□ -1.78
VPS35-205ENST00000563984 AFDNP55196 1824 aaKnown RBP3.92□□□□□ -1.78
VPS35-205ENST00000563984 TMEM131Q92545 1883 aa3.92□□□□□ -1.78
VPS35-205ENST00000563984 TOPAZ1Q8N9V7 1692 aa3.91□□□□□ -1.78
VPS35-205ENST00000563984 PATJQ8NI35 1801 aa3.91□□□□□ -1.78
VPS35-205ENST00000563984 TRBV5-5A0A0J9YX44 114 aa3.91□□□□□ -1.78
VPS35-205ENST00000563984 TRBV7-7A0A0K0K1E9 115 aa3.91□□□□□ -1.78
VPS35-205ENST00000563984 H3BT86 120 aa3.91□□□□□ -1.78
VPS35-205ENST00000563984 LGALS9O00182 355 aa3.91□□□□□ -1.78
VPS35-205ENST00000563984 UBE2L6O14933 153 aa3.91□□□□□ -1.78
VPS35-205ENST00000563984 CST7O76096 145 aa3.91□□□□□ -1.78
VPS35-205ENST00000563984 NDUFB2O95178 105 aa3.91□□□□□ -1.78
VPS35-205ENST00000563984 GYPBP06028 91 aa3.91□□□□□ -1.78
VPS35-205ENST00000563984 PTHLHP12272 177 aa3.91□□□□□ -1.78
VPS35-205ENST00000563984 CCL23P55773 120 aa3.91□□□□□ -1.78
VPS35-205ENST00000563984 NPC2P61916 151 aa3.91□□□□□ -1.78
VPS35-205ENST00000563984 RPS18P62269 152 aaKnown RBP3.91□□□□□ -1.78
VPS35-205ENST00000563984 MRPS36P82909 103 aaKnown RBP3.91□□□□□ -1.78
VPS35-205ENST00000563984 CYCSP99999 105 aaKnown RBP3.91□□□□□ -1.78
VPS35-205ENST00000563984 ERCC8Q13216 396 aa3.91□□□□□ -1.78
VPS35-205ENST00000563984 DOCK1Q14185 1865 aa3.91□□□□□ -1.78
VPS35-205ENST00000563984 MRGPRG-AS1Q2M3A8 158 aa3.91□□□□□ -1.78
VPS35-205ENST00000563984 KTN1-AS1Q86SY8 53 aa3.91□□□□□ -1.78
VPS35-205ENST00000563984 BPIFA4PQ86YQ2 179 aa3.91□□□□□ -1.78
VPS35-205ENST00000563984 C15orf53Q8NAA6 179 aa3.91□□□□□ -1.78
VPS35-205ENST00000563984 FAM19A4Q96LR4 140 aa3.91□□□□□ -1.78
VPS35-205ENST00000563984 LINC00479Q96M42 142 aa3.91□□□□□ -1.78
VPS35-205ENST00000563984 OR2A5Q96R48 311 aa3.91□□□□□ -1.78
VPS35-205ENST00000563984 TM2D3Q9BRN9 247 aa3.91□□□□□ -1.78
VPS35-205ENST00000563984 PLEKHF2Q9H8W4 249 aa3.91□□□□□ -1.78
VPS35-205ENST00000563984 Q9HAA7 133 aa3.91□□□□□ -1.78
VPS35-205ENST00000563984 FAM60AQ9NP50 221 aa3.91□□□□□ -1.78
VPS35-205ENST00000563984 SIX2Q9NPC8 291 aa3.91□□□□□ -1.78
VPS35-205ENST00000563984 MANBALQ9NQG1 85 aa3.91□□□□□ -1.78
VPS35-205ENST00000563984 TNFRSF19Q9NS68 423 aa3.91□□□□□ -1.78
VPS35-205ENST00000563984 RGPD2P0DJD1 1756 aa3.91□□□□□ -1.78
VPS35-205ENST00000563984 ARFGEF2Q9Y6D5 1785 aa3.91□□□□□ -1.78
VPS35-205ENST00000563984 MRC1P22897 1456 aa3.91□□□□□ -1.78
VPS35-205ENST00000563984 DOCK6Q96HP0 2047 aa3.9□□□□□ -1.78
VPS35-205ENST00000563984 ALPK3Q96L96 1907 aa3.9□□□□□ -1.78
VPS35-205ENST00000563984 TRAV9-1A0A075B6T8 112 aa3.9□□□□□ -1.79
VPS35-205ENST00000563984 TRBV6-7A0A0A0MS04 114 aa3.9□□□□□ -1.79
VPS35-205ENST00000563984 LOC101059948A0A1B0GTJ6 334 aa3.9□□□□□ -1.79
VPS35-205ENST00000563984 RBAKDNA6NC62 111 aa3.9□□□□□ -1.79
VPS35-205ENST00000563984 C11orf98E9PRG8 122 aa3.9□□□□□ -1.79
VPS35-205ENST00000563984 UPK2O00526 184 aa3.9□□□□□ -1.79
VPS35-205ENST00000563984 NDUFB3O43676 98 aa3.9□□□□□ -1.79
VPS35-205ENST00000563984 SCRG1O75711 98 aa3.9□□□□□ -1.79
VPS35-205ENST00000563984 TCRAP04437 139 aa3.9□□□□□ -1.79
VPS35-205ENST00000563984 COX6A1P12074 109 aa3.9□□□□□ -1.79
VPS35-205ENST00000563984 HLA-DRB4P13762 266 aa3.9□□□□□ -1.79
VPS35-205ENST00000563984 IL3RAP26951 378 aa3.9□□□□□ -1.79
VPS35-205ENST00000563984 PSMB2P49721 201 aa3.9□□□□□ -1.79
VPS35-205ENST00000563984 INSL3P51460 131 aa3.9□□□□□ -1.79
VPS35-205ENST00000563984 RIGQ13278 110 aa3.9□□□□□ -1.79
VPS35-205ENST00000563984 FAM120AOSQ5T036 256 aa3.9□□□□□ -1.79
VPS35-205ENST00000563984 FAM222AQ5U5X8 452 aa3.9□□□□□ -1.79
VPS35-205ENST00000563984 VN1R4Q7Z5H5 301 aa3.9□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms