RNA–Protein interactions for RNA: ENST00000560634.1

CSPG4P11-201, Transcript of chondroitin sulfate proteoglycan 4 pseudogene 11, humanhuman

BASIC

Gene CSPG4P11, Length 4,910 nt, Biotype unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4P11-201ENST00000560634 PAX4O43316 350 aa10.85□□□□□ -0.67
CSPG4P11-201ENST00000560634 C3orf79P0CE67 100 aa10.85□□□□□ -0.67
CSPG4P11-201ENST00000560634 CD33P20138 364 aa10.85□□□□□ -0.67
CSPG4P11-201ENST00000560634 UBE2V1Q13404 147 aa10.85□□□□□ -0.67
CSPG4P11-201ENST00000560634 GLRX5Q86SX6 157 aa10.85□□□□□ -0.67
CSPG4P11-201ENST00000560634 TNS1Q9HBL0 1735 aaKnown RBP10.85□□□□□ -0.67
CSPG4P11-201ENST00000560634 SCN8AQ9UQD0 1980 aa10.85□□□□□ -0.67
CSPG4P11-201ENST00000560634 IGKV2-40A0A087WW87 121 aaPredicted RBP10.85□□□□□ -0.67
CSPG4P11-201ENST00000560634 IGKV2D-40P01614 121 aaPredicted RBP10.85□□□□□ -0.67
CSPG4P11-201ENST00000560634 ZNF672Q499Z4 452 aaPredicted RBP10.85□□□□□ -0.67
CSPG4P11-201ENST00000560634 SPATA31B1PQ5VZV4 182 aa10.85□□□□□ -0.67
CSPG4P11-201ENST00000560634 EXOC3-AS1Q8N2X6 119 aa10.85□□□□□ -0.67
CSPG4P11-201ENST00000560634 SCRT1Q9BWW7 348 aa10.85□□□□□ -0.67
CSPG4P11-201ENST00000560634 MYOFQ9NZM1 2061 aa10.85□□□□□ -0.67
CSPG4P11-201ENST00000560634 SSBP2P81877 361 aaPredicted RBP10.84□□□□□ -0.67
CSPG4P11-201ENST00000560634 Q6ZS49 121 aa10.84□□□□□ -0.67
CSPG4P11-201ENST00000560634 LURAP1LQ8IV03 231 aa10.84□□□□□ -0.67
CSPG4P11-201ENST00000560634 RCHY1Q96PM5 261 aa10.84□□□□□ -0.67
CSPG4P11-201ENST00000560634 PSPNO60542 156 aa10.84□□□□□ -0.67
CSPG4P11-201ENST00000560634 NCR2O95944 276 aa10.84□□□□□ -0.67
CSPG4P11-201ENST00000560634 MST1P26927 711 aa10.84□□□□□ -0.67
CSPG4P11-201ENST00000560634 LTBRP36941 435 aa10.84□□□□□ -0.67
CSPG4P11-201ENST00000560634 SPRR3Q9UBC9 169 aa10.84□□□□□ -0.67
CSPG4P11-201ENST00000560634 IGHV1-3A0A0C4DH29 117 aa10.84□□□□□ -0.67
CSPG4P11-201ENST00000560634 SYS1-DBNDD2H3BUS1 97 aa10.84□□□□□ -0.67
CSPG4P11-201ENST00000560634 CRIM1Q9NZV1 1036 aa10.84□□□□□ -0.67
CSPG4P11-201ENST00000560634 ANKRD36A6QL64 1941 aa10.84□□□□□ -0.67
CSPG4P11-201ENST00000560634 CADP27708 2225 aa10.84□□□□□ -0.67
CSPG4P11-201ENST00000560634 LYNX1G3V0Z9 82 aa10.84□□□□□ -0.67
CSPG4P11-201ENST00000560634 EFNA2O43921 213 aa10.84□□□□□ -0.67
CSPG4P11-201ENST00000560634 LYNX1P0DP58 116 aa10.84□□□□□ -0.67
CSPG4P11-201ENST00000560634 ZNF415Q09FC8 603 aa10.84□□□□□ -0.67
CSPG4P11-201ENST00000560634 TPTE2P1Q5T6R2 138 aa10.84□□□□□ -0.67
CSPG4P11-201ENST00000560634 NUP35Q8NFH5 326 aa10.84□□□□□ -0.67
CSPG4P11-201ENST00000560634 REG4Q9BYZ8 158 aa10.84□□□□□ -0.67
CSPG4P11-201ENST00000560634 ACACAQ13085 2346 aa10.84□□□□□ -0.67
CSPG4P11-201ENST00000560634 TRBV7-1A0A0A6YYK4 115 aa10.83□□□□□ -0.68
CSPG4P11-201ENST00000560634 TFF1P04155 84 aa10.83□□□□□ -0.68
CSPG4P11-201ENST00000560634 TMEM256Q8N2U0 113 aa10.83□□□□□ -0.68
CSPG4P11-201ENST00000560634 DNAJC30Q96LL9 226 aa10.83□□□□□ -0.68
CSPG4P11-201ENST00000560634 ROS1P08922 2347 aa10.83□□□□□ -0.68
CSPG4P11-201ENST00000560634 SPTAN1Q13813 2472 aaKnown RBP10.83□□□□□ -0.68
CSPG4P11-201ENST00000560634 C2orf82Q6UX34 121 aa10.83□□□□□ -0.68
CSPG4P11-201ENST00000560634 ZNF562Q6V9R5 426 aa10.83□□□□□ -0.68
CSPG4P11-201ENST00000560634 GGNQ86UU5 652 aa10.83□□□□□ -0.68
CSPG4P11-201ENST00000560634 PRDM6Q9NQX0 595 aa10.83□□□□□ -0.68
CSPG4P11-201ENST00000560634 ABCA7Q8IZY2 2146 aa10.83□□□□□ -0.68
CSPG4P11-201ENST00000560634 TRAV40A0A0B4J280 105 aa10.83□□□□□ -0.68
CSPG4P11-201ENST00000560634 SRRM4A7MD48 611 aaKnown RBP10.83□□□□□ -0.68
CSPG4P11-201ENST00000560634 NTN3O00634 580 aaPredicted RBP10.83□□□□□ -0.68
CSPG4P11-201ENST00000560634 MLNRO43193 412 aa10.83□□□□□ -0.68
CSPG4P11-201ENST00000560634 TMEM200BQ69YZ2 307 aa10.83□□□□□ -0.68
CSPG4P11-201ENST00000560634 GATD1Q8NB37 220 aa10.83□□□□□ -0.68
CSPG4P11-201ENST00000560634 NRXN2Q9P2S2 1712 aa10.83□□□□□ -0.68
CSPG4P11-201ENST00000560634 DOCK3Q8IZD9 2030 aa10.83□□□□□ -0.68
CSPG4P11-201ENST00000560634 DIDO1Q9BTC0 2240 aaKnown RBP10.83□□□□□ -0.68
CSPG4P11-201ENST00000560634 IGHV3-64A0A075B6Q5 118 aa10.83□□□□□ -0.68
CSPG4P11-201ENST00000560634 IGKV1-27A0A075B6S5 117 aa10.83□□□□□ -0.68
CSPG4P11-201ENST00000560634 A6NNC1 897 aa10.83□□□□□ -0.68
CSPG4P11-201ENST00000560634 EFNA4P52798 201 aa10.83□□□□□ -0.68
CSPG4P11-201ENST00000560634 C5orf64Q2M2E5 130 aa10.83□□□□□ -0.68
CSPG4P11-201ENST00000560634 CD5LO43866 347 aa10.82□□□□□ -0.68
CSPG4P11-201ENST00000560634 PSG3Q16557 428 aa10.82□□□□□ -0.68
CSPG4P11-201ENST00000560634 PYY3Q5JQD4 70 aa10.82□□□□□ -0.68
CSPG4P11-201ENST00000560634 ATRXP46100 2492 aa10.82□□□□□ -0.68
CSPG4P11-201ENST00000560634 SCN10AQ9Y5Y9 1956 aa10.82□□□□□ -0.68
CSPG4P11-201ENST00000560634 MYMXA0A1B0GTQ4 84 aa10.82□□□□□ -0.68
CSPG4P11-201ENST00000560634 TMEM178BH3BS89 294 aa10.82□□□□□ -0.68
CSPG4P11-201ENST00000560634 RPL15P61313 204 aaKnown RBP10.82□□□□□ -0.68
CSPG4P11-201ENST00000560634 PRB3Q04118 309 aaPredicted RBP10.82□□□□□ -0.68
CSPG4P11-201ENST00000560634 MPV17L2Q567V2 206 aa10.82□□□□□ -0.68
CSPG4P11-201ENST00000560634 ZC2HC1BQ5TFG8 222 aa10.82□□□□□ -0.68
CSPG4P11-201ENST00000560634 FAM90A2PQ658T7 463 aa10.82□□□□□ -0.68
CSPG4P11-201ENST00000560634 SBF2Q86WG5 1849 aa10.82□□□□□ -0.68
CSPG4P11-201ENST00000560634 USMG5Q96IX5 58 aa10.82□□□□□ -0.68
CSPG4P11-201ENST00000560634 PINLYPA6NC86 204 aa10.82□□□□□ -0.68
CSPG4P11-201ENST00000560634 ESDP10768 282 aa10.82□□□□□ -0.68
CSPG4P11-201ENST00000560634 SRSF8Q9BRL6 282 aaKnown RBP10.82□□□□□ -0.68
CSPG4P11-201ENST00000560634 SH2D1AO60880 128 aa10.81□□□□□ -0.68
CSPG4P11-201ENST00000560634 LYL1P12980 280 aa10.81□□□□□ -0.68
CSPG4P11-201ENST00000560634 PRTN3P24158 256 aa10.81□□□□□ -0.68
CSPG4P11-201ENST00000560634 VMO1Q7Z5L0 202 aa10.81□□□□□ -0.68
CSPG4P11-201ENST00000560634 LAMTOR3Q9UHA4 124 aa10.81□□□□□ -0.68
CSPG4P11-201ENST00000560634 TRAV8-1A0A0A6YYK1 113 aa10.81□□□□□ -0.68
CSPG4P11-201ENST00000560634 M0R1W7 72 aa10.81□□□□□ -0.68
CSPG4P11-201ENST00000560634 HGFACQ04756 655 aa10.81□□□□□ -0.68
CSPG4P11-201ENST00000560634 TMEM155Q4W5P6 130 aa10.81□□□□□ -0.68
CSPG4P11-201ENST00000560634 OCIAD2Q56VL3 154 aa10.81□□□□□ -0.68
CSPG4P11-201ENST00000560634 LCN12Q6JVE5 192 aa10.81□□□□□ -0.68
CSPG4P11-201ENST00000560634 FREM3P0C091 2139 aa10.81□□□□□ -0.68
CSPG4P11-201ENST00000560634 H0YJW9 148 aa10.81□□□□□ -0.68
CSPG4P11-201ENST00000560634 NTF4P34130 210 aa10.81□□□□□ -0.68
CSPG4P11-201ENST00000560634 C1QTNF4Q9BXJ3 329 aa10.81□□□□□ -0.68
CSPG4P11-201ENST00000560634 GFRA4Q9GZZ7 299 aa10.81□□□□□ -0.68
CSPG4P11-201ENST00000560634 FOXG1P55316 489 aaPredicted RBP10.8□□□□□ -0.68
CSPG4P11-201ENST00000560634 CD177Q8N6Q3 437 aa10.8□□□□□ -0.68
CSPG4P11-201ENST00000560634 LY6G5BQ8NDX9 201 aa10.8□□□□□ -0.68
CSPG4P11-201ENST00000560634 hDV102S1A0JD36 115 aa10.8□□□□□ -0.68
CSPG4P11-201ENST00000560634 HIST1H4AP62805 103 aaKnown RBP10.8□□□□□ -0.68
CSPG4P11-201ENST00000560634 PDE6HQ13956 83 aa10.8□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms