RNA–Protein interactions for RNA: ENST00000560173.1

LDLR-211, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 389 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-211ENST00000560173 NHLH2Q02577 135 aa7.04□□□□□ -1.28
LDLR-211ENST00000560173 COMMD7Q86VX2 200 aa7.04□□□□□ -1.28
LDLR-211ENST00000560173 EIF4E3Q8N5X7 224 aaKnown RBP7.04□□□□□ -1.28
LDLR-211ENST00000560173 OR5C1Q8NGR4 320 aa7.04□□□□□ -1.28
LDLR-211ENST00000560173 SCGB1C1Q8TD33 95 aa7.04□□□□□ -1.28
LDLR-211ENST00000560173 NPIPB3Q92617 1050 aa7.04□□□□□ -1.28
LDLR-211ENST00000560173 ACY3Q96HD9 319 aa7.04□□□□□ -1.28
LDLR-211ENST00000560173 SMPXQ9UHP9 88 aa7.04□□□□□ -1.28
LDLR-211ENST00000560173 TENM3Q9P273 2699 aa7.04□□□□□ -1.28
LDLR-211ENST00000560173 RAB19A4D1S5 217 aa7.03□□□□□ -1.28
LDLR-211ENST00000560173 PRSS46E5RG02 174 aa7.03□□□□□ -1.28
LDLR-211ENST00000560173 H3BP45 60 aa7.03□□□□□ -1.28
LDLR-211ENST00000560173 TEX46H3BTG2 121 aa7.03□□□□□ -1.28
LDLR-211ENST00000560173 CHEK1O14757 476 aa7.03□□□□□ -1.28
LDLR-211ENST00000560173 SPP1P10451 314 aa7.03□□□□□ -1.28
LDLR-211ENST00000560173 PAX9P55771 341 aa7.03□□□□□ -1.28
LDLR-211ENST00000560173 YPEL3P61236 119 aaPredicted RBP7.03□□□□□ -1.28
LDLR-211ENST00000560173 RAB11AP62491 216 aa7.03□□□□□ -1.28
LDLR-211ENST00000560173 GUCA2BQ16661 112 aa7.03□□□□□ -1.28
LDLR-211ENST00000560173 SPANXN5Q5MJ07 72 aa7.03□□□□□ -1.28
LDLR-211ENST00000560173 UQCC3Q6UW78 93 aa7.03□□□□□ -1.28
LDLR-211ENST00000560173 TMEM14EPQ6UXP3 125 aa7.03□□□□□ -1.28
LDLR-211ENST00000560173 DPPA3Q6W0C5 159 aa7.03□□□□□ -1.28
LDLR-211ENST00000560173 GTSCR1Q86UQ5 136 aa7.03□□□□□ -1.28
LDLR-211ENST00000560173 LILRB2Q8N423 598 aa7.03□□□□□ -1.28
LDLR-211ENST00000560173 OR10P1Q8NGE3 313 aa7.03□□□□□ -1.28
LDLR-211ENST00000560173 TMED6Q8WW62 240 aa7.03□□□□□ -1.28
LDLR-211ENST00000560173 SLC35E1Q96K37 410 aa7.03□□□□□ -1.28
LDLR-211ENST00000560173 CITED4Q96RK1 184 aa7.03□□□□□ -1.28
LDLR-211ENST00000560173 GGACTQ9BVM4 153 aa7.03□□□□□ -1.28
LDLR-211ENST00000560173 RHPN1-AS1Q9BWJ2 59 aa7.03□□□□□ -1.28
LDLR-211ENST00000560173 SMIM3Q9BZL3 60 aa7.03□□□□□ -1.28
LDLR-211ENST00000560173 IGHV3-49A0A0A0MS15 119 aa7.02□□□□□ -1.29
LDLR-211ENST00000560173 ZNF705EA8MWA4 302 aaPredicted RBP7.02□□□□□ -1.29
LDLR-211ENST00000560173 A8MZ25 164 aa7.02□□□□□ -1.29
LDLR-211ENST00000560173 KRBOX1C9JBD0 128 aa7.02□□□□□ -1.29
LDLR-211ENST00000560173 TSPAN4O14817 238 aa7.02□□□□□ -1.29
LDLR-211ENST00000560173 CST7O76096 145 aa7.02□□□□□ -1.29
LDLR-211ENST00000560173 FRMD6-AS1P0C7T7 363 aa7.02□□□□□ -1.29
LDLR-211ENST00000560173 IGHV4-30-4P0DP06 118 aa7.02□□□□□ -1.29
LDLR-211ENST00000560173 CD81P60033 236 aa7.02□□□□□ -1.29
LDLR-211ENST00000560173 RAB2AP61019 212 aa7.02□□□□□ -1.29
LDLR-211ENST00000560173 GAMTQ14353 236 aa7.02□□□□□ -1.29
LDLR-211ENST00000560173 RBPMS2Q6ZRY4 209 aaKnown RBP7.02□□□□□ -1.29
LDLR-211ENST00000560173 RNF2Q99496 336 aa7.02□□□□□ -1.29
LDLR-211ENST00000560173 SPAG8Q99932 426 aaPredicted RBP7.02□□□□□ -1.29
LDLR-211ENST00000560173 PSMG3Q9BT73 122 aaPredicted RBP7.02□□□□□ -1.29
LDLR-211ENST00000560173 C19orf73Q9NVV2 129 aa7.02□□□□□ -1.29
LDLR-211ENST00000560173 HUWE1Q7Z6Z7 4374 aaKnown RBP7.01□□□□□ -1.29
LDLR-211ENST00000560173 IGKV1D-37A0A075B6S9 117 aa7.01□□□□□ -1.29
LDLR-211ENST00000560173 IGHV3OR16-13A0A075B7E8 117 aa7.01□□□□□ -1.29
LDLR-211ENST00000560173 IGHV3-74A0A0B4J1X5 117 aa7.01□□□□□ -1.29
LDLR-211ENST00000560173 MPDU1O75352 247 aa7.01□□□□□ -1.29
LDLR-211ENST00000560173 TOMM40O96008 361 aa7.01□□□□□ -1.29
LDLR-211ENST00000560173 APOHP02749 345 aaPredicted RBP7.01□□□□□ -1.29
LDLR-211ENST00000560173 CD7P09564 240 aa7.01□□□□□ -1.29
LDLR-211ENST00000560173 CRYBB3P26998 211 aa7.01□□□□□ -1.29
LDLR-211ENST00000560173 SERF2P84101 59 aa7.01□□□□□ -1.29
LDLR-211ENST00000560173 SLC38A11Q08AI6 406 aa7.01□□□□□ -1.29
LDLR-211ENST00000560173 CLINT1Q14677 625 aa7.01□□□□□ -1.29
LDLR-211ENST00000560173 FAM74A1Q5RGS3 127 aa7.01□□□□□ -1.29
LDLR-211ENST00000560173 AKR1C8PQ5T2L2 129 aa7.01□□□□□ -1.29
LDLR-211ENST00000560173 TMEM217Q8N7C4 229 aa7.01□□□□□ -1.29
LDLR-211ENST00000560173 Q8WTZ3 238 aa7.01□□□□□ -1.29
LDLR-211ENST00000560173 METTL26Q96S19 204 aa7.01□□□□□ -1.29
LDLR-211ENST00000560173 TMEM147Q9BVK8 224 aa7.01□□□□□ -1.29
LDLR-211ENST00000560173 VSIRQ9H7M9 311 aa7.01□□□□□ -1.29
LDLR-211ENST00000560173 KCNIP2Q9NS61 270 aa7.01□□□□□ -1.29
LDLR-211ENST00000560173 TIMM9Q9Y5J7 89 aa7.01□□□□□ -1.29
LDLR-211ENST00000560173 IGKV1OR2-108A0A075B7D4 117 aa7□□□□□ -1.29
LDLR-211ENST00000560173 ZFP92A6NM28 416 aa7□□□□□ -1.29
LDLR-211ENST00000560173 PMS2P5A8MQ11 134 aa7□□□□□ -1.29
LDLR-211ENST00000560173 FNDC10F2Z333 226 aa7□□□□□ -1.29
LDLR-211ENST00000560173 C17orf112F2Z3M2 114 aa7□□□□□ -1.29
LDLR-211ENST00000560173 HBE1P02100 147 aa7□□□□□ -1.29
LDLR-211ENST00000560173 MBP02144 154 aa7□□□□□ -1.29
LDLR-211ENST00000560173 METTL15P1P0C7V9 234 aa7□□□□□ -1.29
LDLR-211ENST00000560173 RD3LP0DJH9 198 aa7□□□□□ -1.29
LDLR-211ENST00000560173 PSG1P11464 419 aa7□□□□□ -1.29
LDLR-211ENST00000560173 NPPCP23582 126 aa7□□□□□ -1.29
LDLR-211ENST00000560173 BMI1P35226 326 aa7□□□□□ -1.29
LDLR-211ENST00000560173 CAMLGP49069 296 aa7□□□□□ -1.29
LDLR-211ENST00000560173 USF2Q15853 346 aaPredicted RBP7□□□□□ -1.29
LDLR-211ENST00000560173 FAM90A2PQ658T7 463 aa7□□□□□ -1.29
LDLR-211ENST00000560173 ZNF709Q8N972 641 aa7□□□□□ -1.29
LDLR-211ENST00000560173 THAP8Q8NA92 274 aa7□□□□□ -1.29
LDLR-211ENST00000560173 HSD17B11Q8NBQ5 300 aa7□□□□□ -1.29
LDLR-211ENST00000560173 OR2G3Q8NGZ4 309 aa7□□□□□ -1.29
LDLR-211ENST00000560173 TRGV9Q99603 122 aa7□□□□□ -1.29
LDLR-211ENST00000560173 ASCL2Q99929 193 aa7□□□□□ -1.29
LDLR-211ENST00000560173 WFDC10AQ9H1F0 79 aa7□□□□□ -1.29
LDLR-211ENST00000560173 WFDC1Q9HC57 220 aa7□□□□□ -1.29
LDLR-211ENST00000560173 UQCC1Q9NVA1 299 aa7□□□□□ -1.29
LDLR-211ENST00000560173 IGHV3-66A0A0C4DH42 116 aa6.99□□□□□ -1.29
LDLR-211ENST00000560173 OR4C46A6NHA9 309 aa6.99□□□□□ -1.29
LDLR-211ENST00000560173 OR11H12B2RN74 326 aa6.99□□□□□ -1.29
LDLR-211ENST00000560173 IL4P05112 153 aa6.99□□□□□ -1.29
LDLR-211ENST00000560173 CD5P06127 495 aa6.99□□□□□ -1.29
LDLR-211ENST00000560173 NHLRC4P0CG21 123 aaPredicted RBP6.99□□□□□ -1.29
LDLR-211ENST00000560173 ATP6V0CP27449 155 aa6.99□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms