RNA–Protein interactions for RNA: ENST00000555550.1

SCFD1-216, Transcript of sec1 family domain containing 1, humanhuman

TSL 4

Gene SCFD1, Length 541 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-216ENST00000555550 TAX1BP3O14907 124 aa0.36□□□□□ -2.35
SCFD1-216ENST00000555550 INE1O15225 51 aa0.36□□□□□ -2.35
SCFD1-216ENST00000555550 ORC5O43913 435 aa0.36□□□□□ -2.35
SCFD1-216ENST00000555550 OR1I1O60431 355 aa0.36□□□□□ -2.35
SCFD1-216ENST00000555550 TCL1BO95988 128 aa0.36□□□□□ -2.35
SCFD1-216ENST00000555550 CRHP06850 196 aa0.36□□□□□ -2.35
SCFD1-216ENST00000555550 ZNF93P35789 620 aaPredicted RBP0.36□□□□□ -2.35
SCFD1-216ENST00000555550 NCALDP61601 193 aa0.36□□□□□ -2.35
SCFD1-216ENST00000555550 GNG3P63215 75 aa0.36□□□□□ -2.35
SCFD1-216ENST00000555550 ELOBQ15370 118 aa0.36□□□□□ -2.35
SCFD1-216ENST00000555550 LTC4SQ16873 150 aa0.36□□□□□ -2.35
SCFD1-216ENST00000555550 C1orf137Q5JT78 98 aa0.36□□□□□ -2.35
SCFD1-216ENST00000555550 TMEM78Q5T7P6 136 aa0.36□□□□□ -2.35
SCFD1-216ENST00000555550 C22orf39Q6P5X5 142 aa0.36□□□□□ -2.35
SCFD1-216ENST00000555550 GRINAQ7Z429 371 aa0.36□□□□□ -2.35
SCFD1-216ENST00000555550 LINC00311Q8N616 119 aa0.36□□□□□ -2.35
SCFD1-216ENST00000555550 Q8N814 137 aa0.36□□□□□ -2.35
SCFD1-216ENST00000555550 NUP35Q8NFH5 326 aa0.36□□□□□ -2.35
SCFD1-216ENST00000555550 OR4D11Q8NGI4 311 aa0.36□□□□□ -2.35
SCFD1-216ENST00000555550 GNPDA2Q8TDQ7 276 aa0.36□□□□□ -2.35
SCFD1-216ENST00000555550 PATE1Q8WXA2 126 aa0.36□□□□□ -2.35
SCFD1-216ENST00000555550 TEX37Q96LM6 180 aa0.36□□□□□ -2.35
SCFD1-216ENST00000555550 SLC50A1Q9BRV3 221 aa0.36□□□□□ -2.35
SCFD1-216ENST00000555550 CCDC94Q9BW85 323 aaPredicted RBP0.36□□□□□ -2.35
SCFD1-216ENST00000555550 REG4Q9BYZ8 158 aa0.36□□□□□ -2.35
SCFD1-216ENST00000555550 OSTCQ9NRP0 149 aa0.36□□□□□ -2.35
SCFD1-216ENST00000555550 TAS2R4Q9NYW5 299 aa0.36□□□□□ -2.35
SCFD1-216ENST00000555550 OPTCQ9UBM4 332 aa0.36□□□□□ -2.35
SCFD1-216ENST00000555550 PYCARDQ9ULZ3 195 aa0.36□□□□□ -2.35
SCFD1-216ENST00000555550 ARL2BPQ9Y2Y0 163 aa0.36□□□□□ -2.35
SCFD1-216ENST00000555550 FLNAP21333 2647 aaKnown RBP0.36□□□□□ -2.35
SCFD1-216ENST00000555550 CEP192Q8TEP8 1941 aa0.36□□□□□ -2.35
SCFD1-216ENST00000555550 SYNMO15061 1565 aa0.36□□□□□ -2.35
SCFD1-216ENST00000555550 TNRC6AQ8NDV7 1962 aaKnown RBP0.36□□□□□ -2.35
SCFD1-216ENST00000555550 SCN8AQ9UQD0 1980 aa0.36□□□□□ -2.35
SCFD1-216ENST00000555550 EPPK1P58107 5090 aaKnown RBP0.35□□□□□ -2.35
SCFD1-216ENST00000555550 MED12LQ86YW9 2145 aa0.35□□□□□ -2.35
SCFD1-216ENST00000555550 NUP210LQ5VU65 1888 aa0.35□□□□□ -2.35
SCFD1-216ENST00000555550 JMJD1CQ15652 2540 aa0.35□□□□□ -2.35
SCFD1-216ENST00000555550 WDR97A6NE52 1622 aa0.35□□□□□ -2.35
SCFD1-216ENST00000555550 TRANK1O15050 2925 aa0.35□□□□□ -2.35
SCFD1-216ENST00000555550 PHRF1Q9P1Y6 1649 aaKnown RBP0.35□□□□□ -2.35
SCFD1-216ENST00000555550 HIVEP3Q5T1R4 2406 aa0.35□□□□□ -2.35
SCFD1-216ENST00000555550 C7orf71A4D174 169 aa0.35□□□□□ -2.35
SCFD1-216ENST00000555550 PHGR1C9JFL3 82 aa0.35□□□□□ -2.35
SCFD1-216ENST00000555550 J3QRK9 145 aa0.35□□□□□ -2.35
SCFD1-216ENST00000555550 SDCBPO00560 298 aaPredicted RBP0.35□□□□□ -2.35
SCFD1-216ENST00000555550 BAALC-AS2P0C853 105 aa0.35□□□□□ -2.35
SCFD1-216ENST00000555550 G0S2P27469 103 aa0.35□□□□□ -2.35
SCFD1-216ENST00000555550 CASP1P29466 404 aa0.35□□□□□ -2.35
SCFD1-216ENST00000555550 ERP29P30040 261 aaKnown RBP0.35□□□□□ -2.35
SCFD1-216ENST00000555550 YPEL3P61236 119 aaPredicted RBP0.35□□□□□ -2.35
SCFD1-216ENST00000555550 B2MP61769 119 aa0.35□□□□□ -2.35
SCFD1-216ENST00000555550 GNG5P63218 68 aa0.35□□□□□ -2.35
SCFD1-216ENST00000555550 ESRGQ1W209 222 aa0.35□□□□□ -2.35
SCFD1-216ENST00000555550 KRTAP21-1Q3LI58 79 aa0.35□□□□□ -2.35
SCFD1-216ENST00000555550 BRMS1LQ5PSV4 323 aa0.35□□□□□ -2.35
SCFD1-216ENST00000555550 SOSTDC1Q6X4U4 206 aa0.35□□□□□ -2.35
SCFD1-216ENST00000555550 ZNF833PQ6ZTB9 187 aa0.35□□□□□ -2.35
SCFD1-216ENST00000555550 PDZD9Q8IXQ8 264 aa0.35□□□□□ -2.35
SCFD1-216ENST00000555550 OR4E2Q8NGC2 313 aa0.35□□□□□ -2.35
SCFD1-216ENST00000555550 MCFD2Q8NI22 146 aa0.35□□□□□ -2.35
SCFD1-216ENST00000555550 PLEKHB2Q96CS7 222 aa0.35□□□□□ -2.35
SCFD1-216ENST00000555550 LYSMD1Q96S90 227 aa0.35□□□□□ -2.35
SCFD1-216ENST00000555550 HIST1H2BLQ99880 126 aa0.35□□□□□ -2.35
SCFD1-216ENST00000555550 PRADC1Q9BSG0 188 aa0.35□□□□□ -2.35
SCFD1-216ENST00000555550 FAM96AQ9H5X1 160 aa0.35□□□□□ -2.35
SCFD1-216ENST00000555550 BCL2L10Q9HD36 194 aa0.35□□□□□ -2.35
SCFD1-216ENST00000555550 ENY2Q9NPA8 101 aa0.35□□□□□ -2.35
SCFD1-216ENST00000555550 SLC39A9Q9NUM3 307 aa0.35□□□□□ -2.35
SCFD1-216ENST00000555550 SLC35A3Q9Y2D2 325 aa0.35□□□□□ -2.35
SCFD1-216ENST00000555550 RNF11Q9Y3C5 154 aa0.35□□□□□ -2.35
SCFD1-216ENST00000555550 UFC1Q9Y3C8 167 aa0.35□□□□□ -2.35
SCFD1-216ENST00000555550 CREBBPQ92793 2442 aa0.35□□□□□ -2.35
SCFD1-216ENST00000555550 ABCA2Q9BZC7 2435 aa0.35□□□□□ -2.35
SCFD1-216ENST00000555550 HIVEP1P15822 2718 aa0.35□□□□□ -2.35
SCFD1-216ENST00000555550 HMCN2Q8NDA2 5059 aa0.34□□□□□ -2.35
SCFD1-216ENST00000555550 NCOA6Q14686 2063 aaPredicted RBP0.34□□□□□ -2.35
SCFD1-216ENST00000555550 ARHGEF11O15085 1522 aa0.34□□□□□ -2.35
SCFD1-216ENST00000555550 TRAV3A0A0B4J244 114 aa0.34□□□□□ -2.36
SCFD1-216ENST00000555550 IFNA1P01562 189 aa0.34□□□□□ -2.36
SCFD1-216ENST00000555550 EIF2B2P49770 351 aaKnown RBP0.34□□□□□ -2.36
SCFD1-216ENST00000555550 RHOGP84095 191 aa0.34□□□□□ -2.36
SCFD1-216ENST00000555550 NDUFA5Q16718 116 aa0.34□□□□□ -2.36
SCFD1-216ENST00000555550 RNASE10Q5GAN6 216 aaKnown RBP0.34□□□□□ -2.36
SCFD1-216ENST00000555550 KRTAP19-3Q7Z4W3 81 aa0.34□□□□□ -2.36
SCFD1-216ENST00000555550 PRR15Q8IV56 129 aa0.34□□□□□ -2.36
SCFD1-216ENST00000555550 CCL4L1Q8NHW4 92 aa0.34□□□□□ -2.36
SCFD1-216ENST00000555550 Q8TAT8 98 aa0.34□□□□□ -2.36
SCFD1-216ENST00000555550 NEK7Q8TDX7 302 aa0.34□□□□□ -2.36
SCFD1-216ENST00000555550 CANT1Q8WVQ1 401 aa0.34□□□□□ -2.36
SCFD1-216ENST00000555550 SERPINI1Q99574 410 aa0.34□□□□□ -2.36
SCFD1-216ENST00000555550 IMUPQ9GZP8 106 aa0.34□□□□□ -2.36
SCFD1-216ENST00000555550 CCDC90BQ9GZT6 254 aa0.34□□□□□ -2.36
SCFD1-216ENST00000555550 PBOV1Q9GZY1 135 aa0.34□□□□□ -2.36
SCFD1-216ENST00000555550 LYRM2Q9NU23 88 aaPredicted RBP0.34□□□□□ -2.36
SCFD1-216ENST00000555550 UTP11Q9Y3A2 253 aaKnown RBP0.34□□□□□ -2.36
SCFD1-216ENST00000555550 FAM32AQ9Y421 112 aaKnown RBP0.34□□□□□ -2.36
SCFD1-216ENST00000555550 SNURFQ9Y675 71 aa0.34□□□□□ -2.36
SCFD1-216ENST00000555550 ALPK3Q96L96 1907 aa0.34□□□□□ -2.36
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms