RNA–Protein interactions for RNA: ENST00000553280.1

SCFD1-209, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 574 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-209ENST00000553280 SLC25A21Q9BQT8 299 aaPredicted RBP1.93□□□□□ -2.1
SCFD1-209ENST00000553280 CAMSAP2Q08AD1 1489 aa1.93□□□□□ -2.1
SCFD1-209ENST00000553280 COL4A5P29400 1685 aa1.93□□□□□ -2.1
SCFD1-209ENST00000553280 CD109Q6YHK3 1445 aa1.92□□□□□ -2.1
SCFD1-209ENST00000553280 DENND4CQ5VZ89 1909 aa1.92□□□□□ -2.1
SCFD1-209ENST00000553280 TRAV12-1A0A0B4J245 112 aa1.92□□□□□ -2.1
SCFD1-209ENST00000553280 TLCD2A6NGC4 264 aa1.92□□□□□ -2.1
SCFD1-209ENST00000553280 A8MWV9 139 aa1.92□□□□□ -2.1
SCFD1-209ENST00000553280 LYZL6O75951 148 aa1.92□□□□□ -2.1
SCFD1-209ENST00000553280 CRHP06850 196 aa1.92□□□□□ -2.1
SCFD1-209ENST00000553280 BRS3P32247 399 aa1.92□□□□□ -2.1
SCFD1-209ENST00000553280 LTC4SQ16873 150 aa1.92□□□□□ -2.1
SCFD1-209ENST00000553280 Q8IYB0 196 aa1.92□□□□□ -2.1
SCFD1-209ENST00000553280 FAM24BQ8N5W8 94 aa1.92□□□□□ -2.1
SCFD1-209ENST00000553280 RTL8AQ9BWD3 113 aa1.92□□□□□ -2.1
SCFD1-209ENST00000553280 SOX21Q9Y651 276 aaPredicted RBP1.92□□□□□ -2.1
SCFD1-209ENST00000553280 RTTNQ86VV8 2226 aa1.92□□□□□ -2.1
SCFD1-209ENST00000553280 COL4A1P02462 1669 aa1.91□□□□□ -2.1
SCFD1-209ENST00000553280 PIAS1O75925 651 aa1.91□□□□□ -2.1
SCFD1-209ENST00000553280 TFAMQ00059 246 aaKnown RBP1.91□□□□□ -2.1
SCFD1-209ENST00000553280 SMIM15Q7Z3B0 74 aa1.91□□□□□ -2.1
SCFD1-209ENST00000553280 C12orf29Q8N999 325 aa1.91□□□□□ -2.1
SCFD1-209ENST00000553280 ZNF418Q8TF45 676 aaPredicted RBP1.91□□□□□ -2.1
SCFD1-209ENST00000553280 NPCDR1Q9BY65 106 aa1.91□□□□□ -2.1
SCFD1-209ENST00000553280 CYSTM1Q9H1C7 97 aa1.91□□□□□ -2.1
SCFD1-209ENST00000553280 COL11A1P12107 1806 aaPredicted RBP1.91□□□□□ -2.1
SCFD1-209ENST00000553280 UNC13AQ9UPW8 1703 aa1.91□□□□□ -2.1
SCFD1-209ENST00000553280 CEP164Q9UPV0 1460 aa1.9□□□□□ -2.11
SCFD1-209ENST00000553280 MAP1LC3B2A6NCE7 125 aa1.9□□□□□ -2.11
SCFD1-209ENST00000553280 HLA-EP13747 358 aa1.9□□□□□ -2.11
SCFD1-209ENST00000553280 DR1Q01658 176 aa1.9□□□□□ -2.11
SCFD1-209ENST00000553280 DEFB113Q30KQ7 82 aa1.9□□□□□ -2.11
SCFD1-209ENST00000553280 EIF5AL1Q6IS14 154 aaKnown RBP1.9□□□□□ -2.11
SCFD1-209ENST00000553280 DCUN1D2Q6PH85 259 aa1.9□□□□□ -2.11
SCFD1-209ENST00000553280 IFT20Q8IY31 132 aa1.9□□□□□ -2.11
SCFD1-209ENST00000553280 OR10K1Q8NGX5 313 aa1.9□□□□□ -2.11
SCFD1-209ENST00000553280 OR4C6Q8NH72 309 aa1.9□□□□□ -2.11
SCFD1-209ENST00000553280 SFT2D1Q8WV19 159 aa1.9□□□□□ -2.11
SCFD1-209ENST00000553280 DDA1Q9BW61 102 aa1.9□□□□□ -2.11
SCFD1-209ENST00000553280 MAP1LC3BQ9GZQ8 125 aa1.9□□□□□ -2.11
SCFD1-209ENST00000553280 C6orf62Q9GZU0 229 aaPredicted RBP1.9□□□□□ -2.11
SCFD1-209ENST00000553280 POPDC3Q9HBV1 291 aa1.9□□□□□ -2.11
SCFD1-209ENST00000553280 MED9Q9NWA0 146 aa1.9□□□□□ -2.11
SCFD1-209ENST00000553280 OR52A1Q9UKL2 312 aa1.9□□□□□ -2.11
SCFD1-209ENST00000553280 ZCCHC11Q5TAX3 1644 aaKnown RBP1.89□□□□□ -2.11
SCFD1-209ENST00000553280 H0YJX3 145 aa1.89□□□□□ -2.11
SCFD1-209ENST00000553280 IFNA21P01568 189 aa1.89□□□□□ -2.11
SCFD1-209ENST00000553280 RAB4BP61018 213 aa1.89□□□□□ -2.11
SCFD1-209ENST00000553280 CDK5R1Q15078 307 aa1.89□□□□□ -2.11
SCFD1-209ENST00000553280 FKBP1CQ5VVH2 108 aa1.89□□□□□ -2.11
SCFD1-209ENST00000553280 PPTC7Q8NI37 304 aa1.89□□□□□ -2.11
SCFD1-209ENST00000553280 REG4Q9BYZ8 158 aa1.89□□□□□ -2.11
SCFD1-209ENST00000553280 LAMTOR3Q9UHA4 124 aa1.89□□□□□ -2.11
SCFD1-209ENST00000553280 TRAV5A0A0B4J249 113 aa1.88□□□□□ -2.11
SCFD1-209ENST00000553280 KRTAP21-2Q3LI59 83 aa1.88□□□□□ -2.11
SCFD1-209ENST00000553280 C1orf140Q5VVS0 124 aa1.88□□□□□ -2.11
SCFD1-209ENST00000553280 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP1.88□□□□□ -2.11
SCFD1-209ENST00000553280 PATE2Q6UY27 113 aa1.88□□□□□ -2.11
SCFD1-209ENST00000553280 DYDC1Q8WWB3 177 aa1.88□□□□□ -2.11
SCFD1-209ENST00000553280 OBSL1O75147 1896 aa1.88□□□□□ -2.11
SCFD1-209ENST00000553280 PFDN1O60925 122 aa1.87□□□□□ -2.11
SCFD1-209ENST00000553280 CXCL1P09341 107 aa1.87□□□□□ -2.11
SCFD1-209ENST00000553280 ARPP19P56211 112 aa1.87□□□□□ -2.11
SCFD1-209ENST00000553280 ROMO1P60602 79 aa1.87□□□□□ -2.11
SCFD1-209ENST00000553280 PLCXD2Q0VAA5 305 aa1.87□□□□□ -2.11
SCFD1-209ENST00000553280 RTL8BQ17RB0 113 aa1.87□□□□□ -2.11
SCFD1-209ENST00000553280 UNQ6190/PRO20217Q6UXQ8 127 aa1.87□□□□□ -2.11
SCFD1-209ENST00000553280 C15orf53Q8NAA6 179 aa1.87□□□□□ -2.11
SCFD1-209ENST00000553280 MED11Q9P086 117 aa1.87□□□□□ -2.11
SCFD1-209ENST00000553280 TECPR2O15040 1411 aa1.86□□□□□ -2.11
SCFD1-209ENST00000553280 UBR2Q8IWV8 1755 aa1.86□□□□□ -2.11
SCFD1-209ENST00000553280 A0A1W2PRE2 83 aa1.86□□□□□ -2.11
SCFD1-209ENST00000553280 DHFRP00374 187 aa1.86□□□□□ -2.11
SCFD1-209ENST00000553280 TMBIM6P55061 237 aa1.86□□□□□ -2.11
SCFD1-209ENST00000553280 RETNLBQ9BQ08 111 aa1.86□□□□□ -2.11
SCFD1-209ENST00000553280 MRPL40Q9NQ50 206 aaKnown RBP1.86□□□□□ -2.11
SCFD1-209ENST00000553280 TRPM1Q7Z4N2 1603 aa1.86□□□□□ -2.11
SCFD1-209ENST00000553280 ODAMA1E959 279 aa1.85□□□□□ -2.11
SCFD1-209ENST00000553280 HCRTO43612 131 aa1.85□□□□□ -2.11
SCFD1-209ENST00000553280 C1orf137Q5JT78 98 aa1.85□□□□□ -2.11
SCFD1-209ENST00000553280 CROCCP2Q86T23 111 aa1.85□□□□□ -2.11
SCFD1-209ENST00000553280 PRR15Q8IV56 129 aa1.85□□□□□ -2.11
SCFD1-209ENST00000553280 DEFB119Q8N690 84 aa1.85□□□□□ -2.11
SCFD1-209ENST00000553280 NUBP2Q9Y5Y2 271 aa1.85□□□□□ -2.11
SCFD1-209ENST00000553280 LY96Q9Y6Y9 160 aa1.85□□□□□ -2.11
SCFD1-209ENST00000553280 ADGBQ8N7X0 1667 aa1.85□□□□□ -2.11
SCFD1-209ENST00000553280 MYH7BA7E2Y1 1941 aa1.85□□□□□ -2.11
SCFD1-209ENST00000553280 ARHGEF11O15085 1522 aa1.85□□□□□ -2.11
SCFD1-209ENST00000553280 FBN1P35555 2871 aaKnown RBP1.84□□□□□ -2.11
SCFD1-209ENST00000553280 CR1P17927 2039 aa1.84□□□□□ -2.11
SCFD1-209ENST00000553280 TAF1LQ8IZX4 1826 aa1.84□□□□□ -2.11
SCFD1-209ENST00000553280 GNG14A0A1W2PPG7 69 aa1.84□□□□□ -2.11
SCFD1-209ENST00000553280 E7EQ34 232 aa1.84□□□□□ -2.11
SCFD1-209ENST00000553280 HIST1H2BKO60814 126 aa1.84□□□□□ -2.11
SCFD1-209ENST00000553280 HYPMO75409 117 aa1.84□□□□□ -2.11
SCFD1-209ENST00000553280 HIST1H2BJP06899 126 aa1.84□□□□□ -2.11
SCFD1-209ENST00000553280 SURF2Q15527 256 aaPredicted RBP1.84□□□□□ -2.11
SCFD1-209ENST00000553280 MSMO1Q15800 293 aa1.84□□□□□ -2.11
SCFD1-209ENST00000553280 PHF5AQ7RTV0 110 aaKnown RBP1.84□□□□□ -2.11
SCFD1-209ENST00000553280 OR2T35Q8NGX2 323 aa1.84□□□□□ -2.11
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms