RNA–Protein interactions for RNA: ENST00000552045.1

LIMA1-210, Transcript of LIM domain and actin binding 1, humanhuman

TSL 2

Gene LIMA1, Length 386 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-210ENST00000552045 PPIBP23284 216 aaKnown RBP2.82□□□□□ -1.96
LIMA1-210ENST00000552045 PEBP1P30086 187 aaKnown RBP2.82□□□□□ -1.96
LIMA1-210ENST00000552045 G6PCP35575 357 aa2.82□□□□□ -1.96
LIMA1-210ENST00000552045 SERPINB9P50453 376 aa2.82□□□□□ -1.96
LIMA1-210ENST00000552045 FAM173BQ6P4H8 233 aa2.82□□□□□ -1.96
LIMA1-210ENST00000552045 Q6ZTI0 123 aa2.82□□□□□ -1.96
LIMA1-210ENST00000552045 SLC36A1Q7Z2H8 476 aa2.82□□□□□ -1.96
LIMA1-210ENST00000552045 OR11H6Q8NGC7 330 aa2.82□□□□□ -1.96
LIMA1-210ENST00000552045 GNPDA2Q8TDQ7 276 aa2.82□□□□□ -1.96
LIMA1-210ENST00000552045 RASSF5Q8WWW0 418 aa2.82□□□□□ -1.96
LIMA1-210ENST00000552045 BPTFQ12830 3046 aa2.82□□□□□ -1.96
LIMA1-210ENST00000552045 ROCK1Q13464 1354 aa2.82□□□□□ -1.96
LIMA1-210ENST00000552045 CD163L1Q9NR16 1453 aa2.82□□□□□ -1.96
LIMA1-210ENST00000552045 ADGRB1O14514 1584 aa2.82□□□□□ -1.96
LIMA1-210ENST00000552045 OBSCNQ5VST9 7968 aa2.82□□□□□ -1.96
LIMA1-210ENST00000552045 PPLO60437 1756 aa2.82□□□□□ -1.96
LIMA1-210ENST00000552045 BCORQ6W2J9 1755 aa2.82□□□□□ -1.96
LIMA1-210ENST00000552045 MAP1BP46821 2468 aaKnown RBP2.81□□□□□ -1.96
LIMA1-210ENST00000552045 USP24Q9UPU5 2620 aa2.81□□□□□ -1.96
LIMA1-210ENST00000552045 SIGLEC16A6NMB1 481 aa2.81□□□□□ -1.96
LIMA1-210ENST00000552045 TMEM238C9JI98 176 aa2.81□□□□□ -1.96
LIMA1-210ENST00000552045 J3QQQ9 107 aa2.81□□□□□ -1.96
LIMA1-210ENST00000552045 RPS4Y1P22090 263 aaKnown RBP2.81□□□□□ -1.96
LIMA1-210ENST00000552045 KRTAP10-1P60331 282 aa2.81□□□□□ -1.96
LIMA1-210ENST00000552045 TMEM258P61165 79 aa2.81□□□□□ -1.96
LIMA1-210ENST00000552045 RPL26P61254 145 aaKnown RBP2.81□□□□□ -1.96
LIMA1-210ENST00000552045 KRR1Q13601 381 aaKnown RBP2.81□□□□□ -1.96
LIMA1-210ENST00000552045 TTTY12Q9BZ98 90 aa2.81□□□□□ -1.96
LIMA1-210ENST00000552045 RPL26L1Q9UNX3 145 aaKnown RBP2.81□□□□□ -1.96
LIMA1-210ENST00000552045 RIC1Q4ADV7 1423 aa2.81□□□□□ -1.96
LIMA1-210ENST00000552045 COL4A6Q14031 1691 aa2.81□□□□□ -1.96
LIMA1-210ENST00000552045 TJP1Q07157 1748 aa2.81□□□□□ -1.96
LIMA1-210ENST00000552045 PTPRBP23467 1997 aa2.81□□□□□ -1.96
LIMA1-210ENST00000552045 SCN10AQ9Y5Y9 1956 aa2.81□□□□□ -1.96
LIMA1-210ENST00000552045 HEATR5AQ86XA9 2040 aa2.81□□□□□ -1.96
LIMA1-210ENST00000552045 DNAH12Q6ZR08 3092 aa2.81□□□□□ -1.96
LIMA1-210ENST00000552045 TEP1Q99973 2627 aaKnown RBP2.8□□□□□ -1.96
LIMA1-210ENST00000552045 COL1A1P02452 1464 aaPredicted RBP2.8□□□□□ -1.96
LIMA1-210ENST00000552045 VPS8Q8N3P4 1428 aa2.8□□□□□ -1.96
LIMA1-210ENST00000552045 A0A1B0GVG6 124 aa2.8□□□□□ -1.96
LIMA1-210ENST00000552045 E5RI56 91 aa2.8□□□□□ -1.96
LIMA1-210ENST00000552045 TRAPPC2LH3BP13 241 aa2.8□□□□□ -1.96
LIMA1-210ENST00000552045 BUB1B-PAK6H3BSN5 160 aa2.8□□□□□ -1.96
LIMA1-210ENST00000552045 OR2J2O76002 312 aa2.8□□□□□ -1.96
LIMA1-210ENST00000552045 NFYAP23511 347 aaPredicted RBP2.8□□□□□ -1.96
LIMA1-210ENST00000552045 SUPT4H1P63272 117 aaKnown RBP2.8□□□□□ -1.96
LIMA1-210ENST00000552045 RPL19P84098 196 aaKnown RBP2.8□□□□□ -1.96
LIMA1-210ENST00000552045 TPRXLQ17RH7 258 aa2.8□□□□□ -1.96
LIMA1-210ENST00000552045 FAM27BQ5VT28 67 aa2.8□□□□□ -1.96
LIMA1-210ENST00000552045 KTN1-AS1Q86SY8 53 aa2.8□□□□□ -1.96
LIMA1-210ENST00000552045 SLC25A40Q8TBP6 338 aa2.8□□□□□ -1.96
LIMA1-210ENST00000552045 ZCCHC13Q8WW36 166 aaKnown RBP2.8□□□□□ -1.96
LIMA1-210ENST00000552045 PRRT1Q99946 306 aa2.8□□□□□ -1.96
LIMA1-210ENST00000552045 TXNDC17Q9BRA2 123 aa2.8□□□□□ -1.96
LIMA1-210ENST00000552045 PARVBQ9HBI1 364 aa2.8□□□□□ -1.96
LIMA1-210ENST00000552045 XIRP2A4UGR9 3374 aa2.8□□□□□ -1.96
LIMA1-210ENST00000552045 NCKAP5O14513 1909 aa2.8□□□□□ -1.96
LIMA1-210ENST00000552045 DLEC1Q9Y238 1755 aa2.79□□□□□ -1.96
LIMA1-210ENST00000552045 FAM208AQ9UK61 1670 aaKnown RBP2.79□□□□□ -1.96
LIMA1-210ENST00000552045 IGLV3-9A0A075B6K5 115 aa2.79□□□□□ -1.96
LIMA1-210ENST00000552045 A0A0D9SEW6 157 aa2.79□□□□□ -1.96
LIMA1-210ENST00000552045 H3BRN7 92 aa2.79□□□□□ -1.96
LIMA1-210ENST00000552045 SMIM17P0DL12 118 aa2.79□□□□□ -1.96
LIMA1-210ENST00000552045 P0DMU3 169 aa2.79□□□□□ -1.96
LIMA1-210ENST00000552045 FAM231AP0DMU4 169 aa2.79□□□□□ -1.96
LIMA1-210ENST00000552045 FAM231CP0DMU5 169 aa2.79□□□□□ -1.96
LIMA1-210ENST00000552045 G0S2P27469 103 aa2.79□□□□□ -1.96
LIMA1-210ENST00000552045 ERP29P30040 261 aaKnown RBP2.79□□□□□ -1.96
LIMA1-210ENST00000552045 EIF2B2P49770 351 aaKnown RBP2.79□□□□□ -1.96
LIMA1-210ENST00000552045 GNG10P50151 68 aa2.79□□□□□ -1.96
LIMA1-210ENST00000552045 ZNF80P51504 273 aaPredicted RBP2.79□□□□□ -1.96
LIMA1-210ENST00000552045 DEFA3P59666 94 aa2.79□□□□□ -1.96
LIMA1-210ENST00000552045 CDC42P60953 191 aa2.79□□□□□ -1.96
LIMA1-210ENST00000552045 HSPE1P61604 102 aaKnown RBP2.79□□□□□ -1.96
LIMA1-210ENST00000552045 GOLT1AQ6ZVE7 132 aa2.79□□□□□ -1.96
LIMA1-210ENST00000552045 TMED4Q7Z7H5 227 aa2.79□□□□□ -1.96
LIMA1-210ENST00000552045 TERB2Q8NHR7 220 aa2.79□□□□□ -1.96
LIMA1-210ENST00000552045 DOHHQ9BU89 302 aa2.79□□□□□ -1.96
LIMA1-210ENST00000552045 TIMM21Q9BVV7 248 aa2.79□□□□□ -1.96
LIMA1-210ENST00000552045 PLXNA3P51805 1871 aa2.79□□□□□ -1.96
LIMA1-210ENST00000552045 ZNF106Q9H2Y7 1883 aaKnown RBP2.79□□□□□ -1.96
LIMA1-210ENST00000552045 ABCA12Q86UK0 2595 aa2.79□□□□□ -1.96
LIMA1-210ENST00000552045 KIF1BO60333 1816 aa2.79□□□□□ -1.96
LIMA1-210ENST00000552045 RIF1Q5UIP0 2472 aaKnown RBP2.79□□□□□ -1.96
LIMA1-210ENST00000552045 SSC5DA1L4H1 1573 aa2.78□□□□□ -1.96
LIMA1-210ENST00000552045 ZFYVE26Q68DK2 2539 aa2.78□□□□□ -1.96
LIMA1-210ENST00000552045 TONSLQ96HA7 1378 aa2.78□□□□□ -1.96
LIMA1-210ENST00000552045 PLXND1Q9Y4D7 1925 aa2.78□□□□□ -1.96
LIMA1-210ENST00000552045 FAM186AA6NE01 2351 aa2.78□□□□□ -1.96
LIMA1-210ENST00000552045 TRBV10-2A0A0K0K1G8 114 aa2.78□□□□□ -1.96
LIMA1-210ENST00000552045 Q6Q795 121 aa2.78□□□□□ -1.96
LIMA1-210ENST00000552045 LYG2Q86SG7 212 aa2.78□□□□□ -1.96
LIMA1-210ENST00000552045 LRRC28Q86X40 367 aaPredicted RBP2.78□□□□□ -1.96
LIMA1-210ENST00000552045 BPIFA4PQ86YQ2 179 aa2.78□□□□□ -1.96
LIMA1-210ENST00000552045 C2orf50Q96LR7 162 aa2.78□□□□□ -1.96
LIMA1-210ENST00000552045 SCGB3A1Q96QR1 104 aa2.78□□□□□ -1.96
LIMA1-210ENST00000552045 KRTAP4-3Q9BYR4 195 aa2.78□□□□□ -1.96
LIMA1-210ENST00000552045 SLC39A9Q9NUM3 307 aa2.78□□□□□ -1.96
LIMA1-210ENST00000552045 TVP23BQ9NYZ1 205 aa2.78□□□□□ -1.96
LIMA1-210ENST00000552045 SCN7AQ01118 1682 aa2.78□□□□□ -1.96
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms