RNA–Protein interactions for RNA: ENST00000544349.5

VPS33A-209, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 2

Gene VPS33A, Length 2,114 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-209ENST00000544349 ZNF355PQ9NSJ1 428 aa11.3□□□□□ -0.6
VPS33A-209ENST00000544349 DOPEY2Q9Y3R5 2298 aa11.3□□□□□ -0.6
VPS33A-209ENST00000544349 HELTA6NFD8 242 aa11.29□□□□□ -0.6
VPS33A-209ENST00000544349 RNF223E7ERA6 249 aa11.29□□□□□ -0.6
VPS33A-209ENST00000544349 AVPP01185 164 aa11.29□□□□□ -0.6
VPS33A-209ENST00000544349 SNRPCP09234 159 aaKnown RBP11.29□□□□□ -0.6
VPS33A-209ENST00000544349 TAS2R45P59539 299 aa11.29□□□□□ -0.6
VPS33A-209ENST00000544349 ERVFC1-1P60608 527 aa11.29□□□□□ -0.6
VPS33A-209ENST00000544349 NHLRC2Q8NBF2 726 aa11.29□□□□□ -0.6
VPS33A-209ENST00000544349 MAPK1IP1LQ8NDC0 245 aa11.29□□□□□ -0.6
VPS33A-209ENST00000544349 ARPC1AQ92747 370 aa11.29□□□□□ -0.6
VPS33A-209ENST00000544349 MBD6Q96DN6 1003 aa11.29□□□□□ -0.6
VPS33A-209ENST00000544349 TCRBV4S1A1TA0A5B7 111 aa11.29□□□□□ -0.6
VPS33A-209ENST00000544349 COX7A2P2O60397 106 aa11.29□□□□□ -0.6
VPS33A-209ENST00000544349 YPEL3P61236 119 aaPredicted RBP11.29□□□□□ -0.6
VPS33A-209ENST00000544349 NDPQ00604 133 aa11.29□□□□□ -0.6
VPS33A-209ENST00000544349 THAP8Q8NA92 274 aa11.29□□□□□ -0.6
VPS33A-209ENST00000544349 TP53TG3Q9ULZ0 132 aa11.29□□□□□ -0.6
VPS33A-209ENST00000544349 ANKRD17O75179 2603 aaKnown RBP11.28□□□□□ -0.6
VPS33A-209ENST00000544349 IGHV7-81A0A0B4J1V7 117 aa11.28□□□□□ -0.6
VPS33A-209ENST00000544349 A0A1W2PRE2 83 aa11.28□□□□□ -0.6
VPS33A-209ENST00000544349 HLA-DRB1P01911 266 aa11.28□□□□□ -0.6
VPS33A-209ENST00000544349 LINC00310P59036 64 aa11.28□□□□□ -0.6
VPS33A-209ENST00000544349 KLF17Q5JT82 389 aaPredicted RBP11.28□□□□□ -0.6
VPS33A-209ENST00000544349 OR1L6Q8NGR2 347 aa11.28□□□□□ -0.6
VPS33A-209ENST00000544349 LINC00479Q96M42 142 aa11.28□□□□□ -0.6
VPS33A-209ENST00000544349 RASL11BQ9BPW5 248 aa11.28□□□□□ -0.6
VPS33A-209ENST00000544349 C19orf24Q9BVV8 132 aa11.28□□□□□ -0.6
VPS33A-209ENST00000544349 ABCA1O95477 2261 aa11.27□□□□□ -0.6
VPS33A-209ENST00000544349 IGHV3-21A0A0B4J1V1 117 aa11.27□□□□□ -0.6
VPS33A-209ENST00000544349 RPEL1Q2QD12 228 aa11.27□□□□□ -0.6
VPS33A-209ENST00000544349 C10orf113Q5VZT2 155 aa11.27□□□□□ -0.6
VPS33A-209ENST00000544349 OR8I2Q8N0Y5 310 aa11.27□□□□□ -0.6
VPS33A-209ENST00000544349 PIFOQ8TCI5 191 aa11.27□□□□□ -0.6
VPS33A-209ENST00000544349 BTF3L4Q96K17 158 aa11.27□□□□□ -0.6
VPS33A-209ENST00000544349 DNAJC4Q9NNZ3 241 aa11.27□□□□□ -0.6
VPS33A-209ENST00000544349 IER3P46695 156 aa11.27□□□□□ -0.61
VPS33A-209ENST00000544349 TCL1AP56279 114 aa11.27□□□□□ -0.61
VPS33A-209ENST00000544349 PRSS57Q6UWY2 283 aa11.27□□□□□ -0.61
VPS33A-209ENST00000544349 TMEM116Q8NCL8 245 aa11.27□□□□□ -0.61
VPS33A-209ENST00000544349 MRPL18Q9H0U6 180 aaKnown RBP11.27□□□□□ -0.61
VPS33A-209ENST00000544349 SOX21Q9Y651 276 aaPredicted RBP11.27□□□□□ -0.61
VPS33A-209ENST00000544349 FLNBO75369 2602 aaKnown RBP11.27□□□□□ -0.61
VPS33A-209ENST00000544349 PTPN13Q12923 2485 aa11.26□□□□□ -0.61
VPS33A-209ENST00000544349 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP11.26□□□□□ -0.61
VPS33A-209ENST00000544349 NPIPB5A8MRT5 1133 aa11.26□□□□□ -0.61
VPS33A-209ENST00000544349 F2Z2F3 143 aa11.26□□□□□ -0.61
VPS33A-209ENST00000544349 I3L2K1 104 aa11.26□□□□□ -0.61
VPS33A-209ENST00000544349 J3QLI3 93 aa11.26□□□□□ -0.61
VPS33A-209ENST00000544349 SPINK4O60575 86 aa11.26□□□□□ -0.61
VPS33A-209ENST00000544349 TGFAP01135 160 aa11.26□□□□□ -0.61
VPS33A-209ENST00000544349 KRTAP1-3Q8IUG1 177 aa11.26□□□□□ -0.61
VPS33A-209ENST00000544349 TTC9CQ8N5M4 171 aa11.26□□□□□ -0.61
VPS33A-209ENST00000544349 TMEM18Q96B42 140 aa11.26□□□□□ -0.61
VPS33A-209ENST00000544349 CR1P17927 2039 aa11.26□□□□□ -0.61
VPS33A-209ENST00000544349 CELSR2Q9HCU4 2923 aa11.26□□□□□ -0.61
VPS33A-209ENST00000544349 TRAV9-1A0A075B6T8 112 aa11.26□□□□□ -0.61
VPS33A-209ENST00000544349 GCGP01275 180 aa11.26□□□□□ -0.61
VPS33A-209ENST00000544349 EGR2P11161 476 aaPredicted RBP11.26□□□□□ -0.61
VPS33A-209ENST00000544349 PKIAP61925 76 aa11.26□□□□□ -0.61
VPS33A-209ENST00000544349 SLC35B1P78383 322 aa11.26□□□□□ -0.61
VPS33A-209ENST00000544349 ZNF329Q86UD4 541 aa11.26□□□□□ -0.61
VPS33A-209ENST00000544349 C22orf15Q8WYQ4 148 aa11.26□□□□□ -0.61
VPS33A-209ENST00000544349 FXYD5Q96DB9 178 aa11.26□□□□□ -0.61
VPS33A-209ENST00000544349 Q96MF0 132 aa11.26□□□□□ -0.61
VPS33A-209ENST00000544349 RBM14Q96PK6 669 aaKnown RBP11.26□□□□□ -0.61
VPS33A-209ENST00000544349 HSPB9Q9BQS6 159 aa11.26□□□□□ -0.61
VPS33A-209ENST00000544349 PAXXQ9BUH6 204 aa11.26□□□□□ -0.61
VPS33A-209ENST00000544349 CSMD2Q7Z408 3487 aa11.25□□□□□ -0.61
VPS33A-209ENST00000544349 CA1P00915 261 aaPredicted RBP11.25□□□□□ -0.61
VPS33A-209ENST00000544349 IGHV4-31P0DP07 118 aa11.25□□□□□ -0.61
VPS33A-209ENST00000544349 MGST1P10620 155 aaKnown RBP11.25□□□□□ -0.61
VPS33A-209ENST00000544349 TIGITQ495A1 244 aa11.25□□□□□ -0.61
VPS33A-209ENST00000544349 C14orf144Q96I85 54 aa11.25□□□□□ -0.61
VPS33A-209ENST00000544349 RNF2Q99496 336 aa11.25□□□□□ -0.61
VPS33A-209ENST00000544349 SETXQ7Z333 2677 aaKnown RBP11.25□□□□□ -0.61
VPS33A-209ENST00000544349 ZNF705GA8MUZ8 300 aaPredicted RBP11.24□□□□□ -0.61
VPS33A-209ENST00000544349 DDTP30046 118 aa11.24□□□□□ -0.61
VPS33A-209ENST00000544349 BPIFB3P59826 476 aa11.24□□□□□ -0.61
VPS33A-209ENST00000544349 SELENOTP62341 195 aa11.24□□□□□ -0.61
VPS33A-209ENST00000544349 GNG5P63218 68 aa11.24□□□□□ -0.61
VPS33A-209ENST00000544349 LINC00305Q7Z4B0 112 aa11.24□□□□□ -0.61
VPS33A-209ENST00000544349 C5orf56Q8N8D9 126 aa11.24□□□□□ -0.61
VPS33A-209ENST00000544349 TRGV9Q99603 122 aa11.24□□□□□ -0.61
VPS33A-209ENST00000544349 GSX1Q9H4S2 264 aaPredicted RBP11.24□□□□□ -0.61
VPS33A-209ENST00000544349 OSTCQ9NRP0 149 aa11.24□□□□□ -0.61
VPS33A-209ENST00000544349 TNFRSF19Q9NS68 423 aa11.24□□□□□ -0.61
VPS33A-209ENST00000544349 CSMD1Q96PZ7 3565 aa11.24□□□□□ -0.61
VPS33A-209ENST00000544349 TRAV34A0A0B4J273 112 aa11.24□□□□□ -0.61
VPS33A-209ENST00000544349 SNURFLB1AK76 121 aa11.24□□□□□ -0.61
VPS33A-209ENST00000544349 K7EIM0 57 aa11.24□□□□□ -0.61
VPS33A-209ENST00000544349 DEFA6Q01524 100 aa11.24□□□□□ -0.61
VPS33A-209ENST00000544349 TMEM219Q86XT9 240 aa11.24□□□□□ -0.61
VPS33A-209ENST00000544349 ZNF664Q8N3J9 261 aa11.24□□□□□ -0.61
VPS33A-209ENST00000544349 OR1L4Q8NGR5 311 aa11.24□□□□□ -0.61
VPS33A-209ENST00000544349 IGLV11-55A0A075B6I3 123 aa11.23□□□□□ -0.61
VPS33A-209ENST00000544349 TSTD3H0UI37 97 aa11.23□□□□□ -0.61
VPS33A-209ENST00000544349 ORM2P19652 201 aa11.23□□□□□ -0.61
VPS33A-209ENST00000544349 IBA57Q5T440 356 aaKnown RBP11.23□□□□□ -0.61
VPS33A-209ENST00000544349 FANCD2OSQ96PS1 177 aa11.23□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 65.7 ms