RNA–Protein interactions for RNA: ENST00000543185.5

HDAC4-215, Transcript of histone deacetylase 4, humanhuman

TSL 5 BASIC

Gene HDAC4, Length 8,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-215ENST00000543185 ID3Q02535 119 aa16.14■□□□□ 0.17
HDAC4-215ENST00000543185 ADAMTSL5Q6ZMM2 481 aa16.14■□□□□ 0.17
HDAC4-215ENST00000543185 ZNF48Q96MX3 618 aaPredicted RBP16.14■□□□□ 0.17
HDAC4-215ENST00000543185 VGLL1Q99990 258 aa16.14■□□□□ 0.17
HDAC4-215ENST00000543185 PSG8Q9UQ74 426 aa16.14■□□□□ 0.17
HDAC4-215ENST00000543185 A0A1W2PQF6 199 aa16.14■□□□□ 0.17
HDAC4-215ENST00000543185 VCYO14598 125 aa16.14■□□□□ 0.17
HDAC4-215ENST00000543185 EFEMP2O95967 443 aa16.14■□□□□ 0.17
HDAC4-215ENST00000543185 LINC00114Q6XXX2 140 aa16.14■□□□□ 0.17
HDAC4-215ENST00000543185 TRGV9Q99603 122 aa16.14■□□□□ 0.17
HDAC4-215ENST00000543185 C20orf144Q9BQM9 153 aa16.14■□□□□ 0.17
HDAC4-215ENST00000543185 ADARB2-AS1A8MUL3 147 aa16.13■□□□□ 0.17
HDAC4-215ENST00000543185 IGKV3-20P01619 116 aa16.13■□□□□ 0.17
HDAC4-215ENST00000543185 GNG5P63218 68 aa16.13■□□□□ 0.17
HDAC4-215ENST00000543185 GGTLC1Q9BX51 225 aa16.13■□□□□ 0.17
HDAC4-215ENST00000543185 WFDC6Q9BQY6 131 aa16.13■□□□□ 0.17
HDAC4-215ENST00000543185 TNS1Q9HBL0 1735 aaKnown RBP16.13■□□□□ 0.17
HDAC4-215ENST00000543185 PDE6HQ13956 83 aa16.13■□□□□ 0.17
HDAC4-215ENST00000543185 RASL10AQ92737 203 aa16.13■□□□□ 0.17
HDAC4-215ENST00000543185 PRTN3P24158 256 aa16.13■□□□□ 0.17
HDAC4-215ENST00000543185 ITGBL1O95965 494 aaPredicted RBP16.12■□□□□ 0.17
HDAC4-215ENST00000543185 GATD1Q8NB37 220 aa16.12■□□□□ 0.17
HDAC4-215ENST00000543185 CXCL1P09341 107 aa16.12■□□□□ 0.17
HDAC4-215ENST00000543185 LINC00158P58513 81 aa16.12■□□□□ 0.17
HDAC4-215ENST00000543185 PRR32B1ATL7 298 aa16.12■□□□□ 0.17
HDAC4-215ENST00000543185 C1QL2Q7Z5L3 287 aa16.12■□□□□ 0.17
HDAC4-215ENST00000543185 J3QRE1 110 aa16.12■□□□□ 0.17
HDAC4-215ENST00000543185 MORN2Q502X0 79 aa16.12■□□□□ 0.17
HDAC4-215ENST00000543185 FBXL15Q9H469 300 aa16.12■□□□□ 0.17
HDAC4-215ENST00000543185 MUC21A0A0G2JKD1 596 aa16.12■□□□□ 0.17
HDAC4-215ENST00000543185 MUC21A0A140T8X8 626 aa16.12■□□□□ 0.17
HDAC4-215ENST00000543185 MUC21Q5SSG8 566 aa16.12■□□□□ 0.17
HDAC4-215ENST00000543185 MYO18BQ8IUG5 2567 aa16.11■□□□□ 0.17
HDAC4-215ENST00000543185 GAGE2AQ6NT46 116 aa16.11■□□□□ 0.17
HDAC4-215ENST00000543185 A0A087X0K7 114 aa16.11■□□□□ 0.17
HDAC4-215ENST00000543185 STHQ8IWL8 128 aa16.11■□□□□ 0.17
HDAC4-215ENST00000543185 CHCHD2Q9Y6H1 151 aaPredicted RBP16.11■□□□□ 0.17
HDAC4-215ENST00000543185 EVI2AP22794 236 aa16.11■□□□□ 0.17
HDAC4-215ENST00000543185 PTPN13Q12923 2485 aa16.11■□□□□ 0.17
HDAC4-215ENST00000543185 PROB1E7EW31 1015 aa16.11■□□□□ 0.17
HDAC4-215ENST00000543185 PAX4O43316 350 aa16.11■□□□□ 0.17
HDAC4-215ENST00000543185 PRADC1Q9BSG0 188 aa16.11■□□□□ 0.17
HDAC4-215ENST00000543185 RPP25Q9BUL9 199 aaKnown RBP16.11■□□□□ 0.17
HDAC4-215ENST00000543185 PSG1P11464 419 aa16.11■□□□□ 0.17
HDAC4-215ENST00000543185 MPV17L2Q567V2 206 aa16.11■□□□□ 0.17
HDAC4-215ENST00000543185 CITED2Q99967 270 aaPredicted RBP16.11■□□□□ 0.17
HDAC4-215ENST00000543185 OR13A1Q8NGR1 328 aa16.1■□□□□ 0.17
HDAC4-215ENST00000543185 TIMM21Q9BVV7 248 aa16.1■□□□□ 0.17
HDAC4-215ENST00000543185 UTF1Q5T230 341 aa16.1■□□□□ 0.17
HDAC4-215ENST00000543185 NUP35Q8NFH5 326 aa16.1■□□□□ 0.17
HDAC4-215ENST00000543185 DUTP33316 252 aaKnown RBP16.1■□□□□ 0.17
HDAC4-215ENST00000543185 GTSCR1Q86UQ5 136 aa16.1■□□□□ 0.17
HDAC4-215ENST00000543185 CLEC19AQ6UXS0 136 aa16.1■□□□□ 0.17
HDAC4-215ENST00000543185 NRTNQ99748 197 aa16.1■□□□□ 0.17
HDAC4-215ENST00000543185 RBMY1FQ15415 496 aaKnown RBP16.1■□□□□ 0.17
HDAC4-215ENST00000543185 C9orf50Q5SZB4 431 aa16.1■□□□□ 0.17
HDAC4-215ENST00000543185 DPH3P1Q9H4G8 78 aa16.1■□□□□ 0.17
HDAC4-215ENST00000543185 TRACP01848 142 aa16.1■□□□□ 0.17
HDAC4-215ENST00000543185 OTOGLQ3ZCN5 2332 aa16.09■□□□□ 0.17
HDAC4-215ENST00000543185 SRD5A1P18405 259 aa16.09■□□□□ 0.17
HDAC4-215ENST00000543185 IGHV2OR16-5A0A0B4J2B6 119 aa16.09■□□□□ 0.17
HDAC4-215ENST00000543185 MMP23AO75900 390 aa16.09■□□□□ 0.17
HDAC4-215ENST00000543185 CD300EQ496F6 205 aaPredicted RBP16.09■□□□□ 0.17
HDAC4-215ENST00000543185 SPSB3Q6PJ21 355 aa16.09■□□□□ 0.17
HDAC4-215ENST00000543185 TMEM258P61165 79 aa16.09■□□□□ 0.17
HDAC4-215ENST00000543185 SMAD7O15105 426 aaKnown RBP16.09■□□□□ 0.17
HDAC4-215ENST00000543185 CSPG4Q6UVK1 2322 aa16.09■□□□□ 0.17
HDAC4-215ENST00000543185 TMEM133Q9H2Q1 129 aa16.09■□□□□ 0.17
HDAC4-215ENST00000543185 LOC101059948A0A1B0GTJ6 334 aa16.09■□□□□ 0.17
HDAC4-215ENST00000543185 ATP6V0BQ99437 205 aa16.09■□□□□ 0.17
HDAC4-215ENST00000543185 KIAA1671Q9BY89 1806 aa16.09■□□□□ 0.17
HDAC4-215ENST00000543185 TREML4Q6UXN2 200 aa16.08■□□□□ 0.17
HDAC4-215ENST00000543185 SLC25A28Q96A46 364 aa16.08■□□□□ 0.17
HDAC4-215ENST00000543185 FAM231BA6NCW3 169 aa16.08■□□□□ 0.17
HDAC4-215ENST00000543185 LY6EQ16553 131 aa16.08■□□□□ 0.16
HDAC4-215ENST00000543185 REG4Q9BYZ8 158 aa16.08■□□□□ 0.16
HDAC4-215ENST00000543185 CRYBA2P53672 197 aa16.08■□□□□ 0.16
HDAC4-215ENST00000543185 Q0VG73 95 aa16.08■□□□□ 0.16
HDAC4-215ENST00000543185 PSG3Q16557 428 aa16.08■□□□□ 0.16
HDAC4-215ENST00000543185 SHISA3A0PJX4 238 aa16.08■□□□□ 0.16
HDAC4-215ENST00000543185 PYY3Q5JQD4 70 aa16.08■□□□□ 0.16
HDAC4-215ENST00000543185 FAM208BQ5VWN6 2430 aa16.07■□□□□ 0.16
HDAC4-215ENST00000543185 ERCC8Q13216 396 aa16.07■□□□□ 0.16
HDAC4-215ENST00000543185 SOCS3O14543 225 aa16.07■□□□□ 0.16
HDAC4-215ENST00000543185 C9orf118A6NHY6 69 aa16.07■□□□□ 0.16
HDAC4-215ENST00000543185 IL18BPO95998 194 aa16.07■□□□□ 0.16
HDAC4-215ENST00000543185 BSPH1Q075Z2 132 aa16.07■□□□□ 0.16
HDAC4-215ENST00000543185 PCOLCEQ15113 449 aa16.07■□□□□ 0.16
HDAC4-215ENST00000543185 POU2AF1Q16633 256 aa16.07■□□□□ 0.16
HDAC4-215ENST00000543185 GREM1O60565 184 aa16.07■□□□□ 0.16
HDAC4-215ENST00000543185 CECR9P0C854 216 aa16.07■□□□□ 0.16
HDAC4-215ENST00000543185 WDR83OSQ9Y284 106 aa16.07■□□□□ 0.16
HDAC4-215ENST00000543185 TRBV7-1A0A0A6YYK4 115 aa16.06■□□□□ 0.16
HDAC4-215ENST00000543185 SSC4DQ8WTU2 575 aa16.06■□□□□ 0.16
HDAC4-215ENST00000543185 LYL1P12980 280 aa16.06■□□□□ 0.16
HDAC4-215ENST00000543185 ZNF415Q09FC8 603 aa16.06■□□□□ 0.16
HDAC4-215ENST00000543185 TRGV4A0A0C4DH28 118 aa16.06■□□□□ 0.16
HDAC4-215ENST00000543185 LINC00477Q96M19 166 aa16.05■□□□□ 0.16
HDAC4-215ENST00000543185 SPATA31B1PQ5VZV4 182 aa16.05■□□□□ 0.16
HDAC4-215ENST00000543185 CRIM1Q9NZV1 1036 aa16.05■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms