RNA–Protein interactions for RNA: ENST00000538995.1

RTN3-209, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 814 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-209ENST00000538995 RAB40CQ96S21 281 aa8.44□□□□□ -1.06
RTN3-209ENST00000538995 MFFQ9GZY8 342 aa8.44□□□□□ -1.06
RTN3-209ENST00000538995 PSENENQ9NZ42 101 aa8.44□□□□□ -1.06
RTN3-209ENST00000538995 TSC22D2O75157 780 aa8.43□□□□□ -1.06
RTN3-209ENST00000538995 TCRBP04435 133 aa8.43□□□□□ -1.06
RTN3-209ENST00000538995 HLA-DRB4P13762 266 aa8.43□□□□□ -1.06
RTN3-209ENST00000538995 C4BPBP20851 252 aa8.43□□□□□ -1.06
RTN3-209ENST00000538995 ID1P41134 155 aa8.43□□□□□ -1.06
RTN3-209ENST00000538995 PSMB3P49720 205 aa8.43□□□□□ -1.06
RTN3-209ENST00000538995 MEOX2P50222 304 aa8.43□□□□□ -1.06
RTN3-209ENST00000538995 NUTF2P61970 127 aaKnown RBP8.43□□□□□ -1.06
RTN3-209ENST00000538995 DLK1P80370 383 aa8.43□□□□□ -1.06
RTN3-209ENST00000538995 CEMP1Q6PRD7 247 aaPredicted RBP8.43□□□□□ -1.06
RTN3-209ENST00000538995 TMEM14EPQ6UXP3 125 aa8.43□□□□□ -1.06
RTN3-209ENST00000538995 ZBTB8BQ8NAP8 495 aaPredicted RBP8.43□□□□□ -1.06
RTN3-209ENST00000538995 S100ZQ8WXG8 99 aa8.43□□□□□ -1.06
RTN3-209ENST00000538995 C1QTNF4Q9BXJ3 329 aa8.43□□□□□ -1.06
RTN3-209ENST00000538995 KLK5Q9Y337 293 aaPredicted RBP8.43□□□□□ -1.06
RTN3-209ENST00000538995 HLA-DRB4X5D2U9 266 aa8.43□□□□□ -1.06
RTN3-209ENST00000538995 PMS2P5A8MQ11 134 aa8.42□□□□□ -1.06
RTN3-209ENST00000538995 ZNF705EA8MWA4 302 aaPredicted RBP8.42□□□□□ -1.06
RTN3-209ENST00000538995 H3BMM0 161 aa8.42□□□□□ -1.06
RTN3-209ENST00000538995 ISLRO14498 428 aa8.42□□□□□ -1.06
RTN3-209ENST00000538995 SOCS3O14543 225 aa8.42□□□□□ -1.06
RTN3-209ENST00000538995 MIFP14174 115 aa8.42□□□□□ -1.06
RTN3-209ENST00000538995 GALR1P47211 349 aa8.42□□□□□ -1.06
RTN3-209ENST00000538995 SELENOTP62341 195 aa8.42□□□□□ -1.06
RTN3-209ENST00000538995 SPATA31B1PQ5VZV4 182 aa8.42□□□□□ -1.06
RTN3-209ENST00000538995 OR8I2Q8N0Y5 310 aa8.42□□□□□ -1.06
RTN3-209ENST00000538995 Q8NAQ8 132 aa8.42□□□□□ -1.06
RTN3-209ENST00000538995 GPR82Q96P67 336 aa8.42□□□□□ -1.06
RTN3-209ENST00000538995 TMEM147Q9BVK8 224 aa8.42□□□□□ -1.06
RTN3-209ENST00000538995 NUDT15Q9NV35 164 aa8.42□□□□□ -1.06
RTN3-209ENST00000538995 RCL1Q9Y2P8 373 aaKnown RBP8.42□□□□□ -1.06
RTN3-209ENST00000538995 SMCO3A2RU48 225 aa8.41□□□□□ -1.06
RTN3-209ENST00000538995 K7EPK0 472 aa8.41□□□□□ -1.06
RTN3-209ENST00000538995 SCGB1D2O95969 90 aa8.41□□□□□ -1.06
RTN3-209ENST00000538995 PAX9P55771 341 aa8.41□□□□□ -1.06
RTN3-209ENST00000538995 ZNF846Q147U1 533 aa8.41□□□□□ -1.06
RTN3-209ENST00000538995 FOXI2Q6ZQN5 318 aa8.41□□□□□ -1.06
RTN3-209ENST00000538995 CYP2G1PQ6ZSU1 146 aa8.41□□□□□ -1.06
RTN3-209ENST00000538995 S100A7AQ86SG5 101 aa8.41□□□□□ -1.06
RTN3-209ENST00000538995 CSNK1G2-AS1Q8NCQ2 148 aa8.41□□□□□ -1.06
RTN3-209ENST00000538995 OR10P1Q8NGE3 313 aa8.41□□□□□ -1.06
RTN3-209ENST00000538995 OR1B1Q8NGR6 318 aa8.41□□□□□ -1.06
RTN3-209ENST00000538995 C11orf45Q8TAV5 145 aa8.41□□□□□ -1.06
RTN3-209ENST00000538995 ZNF431Q8TF32 576 aaPredicted RBP8.41□□□□□ -1.06
RTN3-209ENST00000538995 CLUHP3Q96NS8 147 aa8.41□□□□□ -1.06
RTN3-209ENST00000538995 GGACTQ9BVM4 153 aa8.41□□□□□ -1.06
RTN3-209ENST00000538995 WDR12Q9GZL7 423 aaKnown RBP8.41□□□□□ -1.06
RTN3-209ENST00000538995 HRH4Q9H3N8 390 aa8.41□□□□□ -1.06
RTN3-209ENST00000538995 GSKIPQ9P0R6 139 aa8.41□□□□□ -1.06
RTN3-209ENST00000538995 MGAT4CQ9UBM8 478 aa8.41□□□□□ -1.06
RTN3-209ENST00000538995 TRAV6A0A075B6T7 132 aa8.4□□□□□ -1.06
RTN3-209ENST00000538995 ZNF98A6NK75 572 aa8.4□□□□□ -1.06
RTN3-209ENST00000538995 MBPP02686 304 aaPredicted RBP8.4□□□□□ -1.06
RTN3-209ENST00000538995 IL5P05113 134 aa8.4□□□□□ -1.06
RTN3-209ENST00000538995 METTL15P1P0C7V9 234 aa8.4□□□□□ -1.06
RTN3-209ENST00000538995 ORM2P19652 201 aa8.4□□□□□ -1.06
RTN3-209ENST00000538995 PLP1P60201 277 aa8.4□□□□□ -1.06
RTN3-209ENST00000538995 ASAH1Q13510 395 aa8.4□□□□□ -1.06
RTN3-209ENST00000538995 MZT2BQ6NZ67 158 aa8.4□□□□□ -1.06
RTN3-209ENST00000538995 PHLDA1Q8WV24 401 aaPredicted RBP8.4□□□□□ -1.06
RTN3-209ENST00000538995 LINC00476Q8WZB0 136 aa8.4□□□□□ -1.06
RTN3-209ENST00000538995 SLC25A32Q9H2D1 315 aa8.4□□□□□ -1.06
RTN3-209ENST00000538995 SAV1Q9H4B6 383 aaPredicted RBP8.4□□□□□ -1.06
RTN3-209ENST00000538995 NPVFQ9HCQ7 196 aa8.4□□□□□ -1.06
RTN3-209ENST00000538995 TBC1D24Q9ULP9 559 aa8.4□□□□□ -1.06
RTN3-209ENST00000538995 HYDINQ4G0P3 5121 aa8.39□□□□□ -1.07
RTN3-209ENST00000538995 IGHV4-28A0A0C4DH34 117 aa8.39□□□□□ -1.07
RTN3-209ENST00000538995 FAM240BA0A1B0GVZ2 78 aa8.39□□□□□ -1.07
RTN3-209ENST00000538995 C7orf66A4D0T2 115 aa8.39□□□□□ -1.07
RTN3-209ENST00000538995 H3BRN7 92 aa8.39□□□□□ -1.07
RTN3-209ENST00000538995 H2AFB2P0C5Z0 115 aa8.39□□□□□ -1.07
RTN3-209ENST00000538995 LINC00869P0C866 280 aa8.39□□□□□ -1.07
RTN3-209ENST00000538995 GATA2P23769 480 aaPredicted RBP8.39□□□□□ -1.07
RTN3-209ENST00000538995 RAP2BP61225 183 aa8.39□□□□□ -1.07
RTN3-209ENST00000538995 TEPPQ6URK8 271 aa8.39□□□□□ -1.07
RTN3-209ENST00000538995 TMEM182Q6ZP80 229 aaPredicted RBP8.39□□□□□ -1.07
RTN3-209ENST00000538995 C12orf45Q8N5I9 185 aaPredicted RBP8.39□□□□□ -1.07
RTN3-209ENST00000538995 LINC00052Q96N35 136 aa8.39□□□□□ -1.07
RTN3-209ENST00000538995 SEC22CQ9BRL7 303 aa8.39□□□□□ -1.07
RTN3-209ENST00000538995 SHANK2-AS3Q9BTD1 123 aa8.39□□□□□ -1.07
RTN3-209ENST00000538995 SLC25A22Q9H936 323 aa8.39□□□□□ -1.07
RTN3-209ENST00000538995 RNF24Q9Y225 148 aa8.39□□□□□ -1.07
RTN3-209ENST00000538995 HIGD1AQ9Y241 93 aa8.39□□□□□ -1.07
RTN3-209ENST00000538995 X6R8D5 127 aa8.39□□□□□ -1.07
RTN3-209ENST00000538995 L7N2F9 121 aa8.38□□□□□ -1.07
RTN3-209ENST00000538995 CCSO14618 274 aa8.38□□□□□ -1.07
RTN3-209ENST00000538995 HYPMO75409 117 aa8.38□□□□□ -1.07
RTN3-209ENST00000538995 DEDDO75618 318 aa8.38□□□□□ -1.07
RTN3-209ENST00000538995 CCNKO75909 580 aa8.38□□□□□ -1.07
RTN3-209ENST00000538995 RPL7P18124 248 aaKnown RBP8.38□□□□□ -1.07
RTN3-209ENST00000538995 NANOS2P60321 138 aaKnown RBP8.38□□□□□ -1.07
RTN3-209ENST00000538995 RRAS2P62070 204 aaPredicted RBP8.38□□□□□ -1.07
RTN3-209ENST00000538995 VAMP2P63027 116 aa8.38□□□□□ -1.07
RTN3-209ENST00000538995 PXDC1Q5TGL8 231 aa8.38□□□□□ -1.07
RTN3-209ENST00000538995 EBLN2Q6P2I7 272 aa8.38□□□□□ -1.07
RTN3-209ENST00000538995 ZNF546Q86UE3 836 aa8.38□□□□□ -1.07
RTN3-209ENST00000538995 C16orf92Q96LL3 132 aa8.38□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 253 ms