RNA–Protein interactions for RNA: ENST00000534705.5

USP48-215, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 4

Gene USP48, Length 566 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-215ENST00000534705 TAF9BQ9HBM6 251 aa2.44□□□□□ -2.02
USP48-215ENST00000534705 TMEM106BQ9NUM4 274 aa2.44□□□□□ -2.02
USP48-215ENST00000534705 SLC22A13Q9Y226 551 aa2.44□□□□□ -2.02
USP48-215ENST00000534705 RCL1Q9Y2P8 373 aaKnown RBP2.44□□□□□ -2.02
USP48-215ENST00000534705 LAMTOR2Q9Y2Q5 125 aa2.44□□□□□ -2.02
USP48-215ENST00000534705 NIPBLQ6KC79 2804 aaeCLIP2.43□□□□□ -2.02
USP48-215ENST00000534705 C2CD3Q4AC94 2353 aa2.43□□□□□ -2.02
USP48-215ENST00000534705 NAV3Q8IVL0 2385 aa2.43□□□□□ -2.02
USP48-215ENST00000534705 SETD2Q9BYW2 2564 aaPredicted RBP2.43□□□□□ -2.02
USP48-215ENST00000534705 TRAV8-7A0A075B6U6 113 aa2.43□□□□□ -2.02
USP48-215ENST00000534705 IGHV3-35A0A0C4DH35 117 aa2.43□□□□□ -2.02
USP48-215ENST00000534705 LOC100131303A0A0U1RQF7 123 aa2.43□□□□□ -2.02
USP48-215ENST00000534705 A0A1B0GV72 72 aa2.43□□□□□ -2.02
USP48-215ENST00000534705 A0A1B0GWB2 263 aa2.43□□□□□ -2.02
USP48-215ENST00000534705 FAM231BA6NCW3 169 aa2.43□□□□□ -2.02
USP48-215ENST00000534705 RBFOX3A6NFN3 312 aa2.43□□□□□ -2.02
USP48-215ENST00000534705 GJE1A6NN92 205 aa2.43□□□□□ -2.02
USP48-215ENST00000534705 OR11H12B2RN74 326 aa2.43□□□□□ -2.02
USP48-215ENST00000534705 TRAPPC2LH3BP13 241 aa2.43□□□□□ -2.02
USP48-215ENST00000534705 TNFSF11O14788 317 aa2.43□□□□□ -2.02
USP48-215ENST00000534705 GEMIN2O14893 280 aaKnown RBP2.43□□□□□ -2.02
USP48-215ENST00000534705 TAX1BP3O14907 124 aa2.43□□□□□ -2.02
USP48-215ENST00000534705 RBFOX2O43251 390 aaKnown RBP eCLIP2.43□□□□□ -2.02
USP48-215ENST00000534705 SS18L1O75177 396 aaPredicted RBP2.43□□□□□ -2.02
USP48-215ENST00000534705 NPIPB7O75200 414 aa2.43□□□□□ -2.02
USP48-215ENST00000534705 IGHV3-9P01782 118 aa2.43□□□□□ -2.02
USP48-215ENST00000534705 CD3DP04234 171 aa2.43□□□□□ -2.02
USP48-215ENST00000534705 OR10J4P0C629 311 aa2.43□□□□□ -2.02
USP48-215ENST00000534705 IGLC1P0CG04 106 aa2.43□□□□□ -2.02
USP48-215ENST00000534705 CT45A6P0DMU7 189 aa2.43□□□□□ -2.02
USP48-215ENST00000534705 CT45A5P0DMU8 189 aa2.43□□□□□ -2.02
USP48-215ENST00000534705 CT45A7P0DMV0 189 aa2.43□□□□□ -2.02
USP48-215ENST00000534705 PTHLHP12272 177 aa2.43□□□□□ -2.02
USP48-215ENST00000534705 COX6B1P14854 86 aa2.43□□□□□ -2.02
USP48-215ENST00000534705 FUT3P21217 361 aa2.43□□□□□ -2.02
USP48-215ENST00000534705 AQP1P29972 269 aa2.43□□□□□ -2.02
USP48-215ENST00000534705 PRSS3P35030 304 aa2.43□□□□□ -2.02
USP48-215ENST00000534705 MDH2P40926 338 aaKnown RBP2.43□□□□□ -2.02
USP48-215ENST00000534705 CRYBA4P53673 196 aa2.43□□□□□ -2.02
USP48-215ENST00000534705 OR12D2P58182 307 aa2.43□□□□□ -2.02
USP48-215ENST00000534705 TAS2R31P59538 309 aa2.43□□□□□ -2.02
USP48-215ENST00000534705 UBE2KP61086 200 aa2.43□□□□□ -2.02
USP48-215ENST00000534705 HLA-DRB3P79483 266 aa2.43□□□□□ -2.02
USP48-215ENST00000534705 MMDQ15546 238 aa2.43□□□□□ -2.02
USP48-215ENST00000534705 SLC9A3R2Q15599 337 aa2.43□□□□□ -2.02
USP48-215ENST00000534705 TMEM183BQ1AE95 376 aa2.43□□□□□ -2.02
USP48-215ENST00000534705 PDZD11Q5EBL8 140 aa2.43□□□□□ -2.02
USP48-215ENST00000534705 KIAA2026Q5HYC2 2103 aa2.43□□□□□ -2.02
USP48-215ENST00000534705 CT45A1Q5HYN5 189 aa2.43□□□□□ -2.02
USP48-215ENST00000534705 LDLRAD2Q5SZI1 272 aa2.43□□□□□ -2.02
USP48-215ENST00000534705 MRPL2Q5T653 305 aaKnown RBP2.43□□□□□ -2.02
USP48-215ENST00000534705 C2orf66Q6UXQ4 117 aa2.43□□□□□ -2.02
USP48-215ENST00000534705 DPPA3Q6W0C5 159 aa2.43□□□□□ -2.02
USP48-215ENST00000534705 ZNF705AQ6ZN79 300 aaPredicted RBP2.43□□□□□ -2.02
USP48-215ENST00000534705 LINC00336Q6ZUF6 198 aa2.43□□□□□ -2.02
USP48-215ENST00000534705 TMEM144Q7Z5S9 345 aa2.43□□□□□ -2.02
USP48-215ENST00000534705 LHFPL1Q86WI0 220 aa2.43□□□□□ -2.02
USP48-215ENST00000534705 VKORC1L1Q8N0U8 176 aa2.43□□□□□ -2.02
USP48-215ENST00000534705 MUC15Q8N387 334 aa2.43□□□□□ -2.02
USP48-215ENST00000534705 SUMF2Q8NBJ7 301 aa2.43□□□□□ -2.02
USP48-215ENST00000534705 OR11H1Q8NG94 326 aa2.43□□□□□ -2.02
USP48-215ENST00000534705 OR10W1Q8NGF6 305 aa2.43□□□□□ -2.02
USP48-215ENST00000534705 OR5L1Q8NGL2 311 aa2.43□□□□□ -2.02
USP48-215ENST00000534705 OR11L1Q8NGX0 322 aa2.43□□□□□ -2.02
USP48-215ENST00000534705 OR11H2Q8NH07 326 aa2.43□□□□□ -2.02
USP48-215ENST00000534705 CLDND2Q8NHS1 167 aa2.43□□□□□ -2.02
USP48-215ENST00000534705 CT45A3Q8NHU0 189 aa2.43□□□□□ -2.02
USP48-215ENST00000534705 ZNF563Q8TA94 476 aa2.43□□□□□ -2.02
USP48-215ENST00000534705 BAALCQ8WXS3 180 aa2.43□□□□□ -2.02
USP48-215ENST00000534705 RNASE6Q93091 150 aaKnown RBP2.43□□□□□ -2.02
USP48-215ENST00000534705 TMEM230Q96A57 120 aa2.43□□□□□ -2.02
USP48-215ENST00000534705 RPEQ96AT9 228 aa2.43□□□□□ -2.02
USP48-215ENST00000534705 REEP6Q96HR9 211 aa2.43□□□□□ -2.02
USP48-215ENST00000534705 CIB3Q96Q77 187 aaPredicted RBP2.43□□□□□ -2.02
USP48-215ENST00000534705 TBX15Q96SF7 602 aa2.43□□□□□ -2.02
USP48-215ENST00000534705 VPS25Q9BRG1 176 aa2.43□□□□□ -2.02
USP48-215ENST00000534705 SFXN3Q9BWM7 321 aa2.43□□□□□ -2.02
USP48-215ENST00000534705 RERGLQ9H628 205 aa2.43□□□□□ -2.02
USP48-215ENST00000534705 PLEKHF2Q9H8W4 249 aa2.43□□□□□ -2.02
USP48-215ENST00000534705 TMEM38BQ9NVV0 291 aa2.43□□□□□ -2.02
USP48-215ENST00000534705 KCNIP1Q9NZI2 227 aa2.43□□□□□ -2.02
USP48-215ENST00000534705 UQCR10Q9UDW1 63 aa2.43□□□□□ -2.02
USP48-215ENST00000534705 NAT8Q9UHE5 227 aa2.43□□□□□ -2.02
USP48-215ENST00000534705 TBL2Q9Y4P3 447 aaKnown RBP2.43□□□□□ -2.02
USP48-215ENST00000534705 TSSC4Q9Y5U2 329 aaPredicted RBP2.43□□□□□ -2.02
USP48-215ENST00000534705 SVEP1Q4LDE5 3571 aa2.43□□□□□ -2.02
USP48-215ENST00000534705 DNHD1Q96M86 4753 aa2.42□□□□□ -2.02
USP48-215ENST00000534705 MXRA5Q9NR99 2828 aa2.42□□□□□ -2.02
USP48-215ENST00000534705 FN1P02751 2386 aaKnown RBP2.42□□□□□ -2.02
USP48-215ENST00000534705 IGKV1D-42A0A075B6H8 117 aa2.42□□□□□ -2.02
USP48-215ENST00000534705 TMED7-TICAM2A0A0A6YYA0 188 aa2.42□□□□□ -2.02
USP48-215ENST00000534705 IGHV3-15A0A0B4J1V0 119 aa2.42□□□□□ -2.02
USP48-215ENST00000534705 DAPL1A0PJW8 107 aa2.42□□□□□ -2.02
USP48-215ENST00000534705 ZNF705GA8MUZ8 300 aaPredicted RBP2.42□□□□□ -2.02
USP48-215ENST00000534705 DEFB108AA8MXU0 73 aa2.42□□□□□ -2.02
USP48-215ENST00000534705 EEF1E1-BLOC1S5C9J1V9 151 aa2.42□□□□□ -2.02
USP48-215ENST00000534705 SLC17A2O00624 439 aa2.42□□□□□ -2.02
USP48-215ENST00000534705 PLPP3O14495 311 aa2.42□□□□□ -2.02
USP48-215ENST00000534705 XKRYO14609 159 aa2.42□□□□□ -2.02
USP48-215ENST00000534705 AGPAT2O15120 278 aa2.42□□□□□ -2.02
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms